Coatc6 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Coatc6 (Coat color QTL 6) Rattus norvegicus

Symbol: Coatc6
Name: Coat color QTL 6
RGD ID: 10755430
Trait: coat/hair pigmentation trait   (VT:0010463)    
Measurement Type: pigmented ventral coat/hair area to total ventral coat/hair area ratio   (CMO:0001812)    
LOD Score: LRS=7.3
P Value: 0.02576
Variance: 5.0
Inheritance Type: additive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2211,591,100 - 56,591,100RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0210,555,275 - 55,555,275RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0229,691,473 - 74,691,473RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4211,345,559 - 56,345,559RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: AR-Ednrbsl/Hkv LEH/Hkv 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Vertebrate Trait

Rat Strain
AR-Ednrbsl/Hkv  (IEA)
LEH/Hkv  (IEA)

References

References - curated
# Reference Title Reference Citation
1. QTL analysis of modifiers for pigmentary disorder in rats carrying Ednrb(sl) mutations. Huang J, etal., Sci Rep. 2016 Jan 22;6:19697. doi: 10.1038/srep19697.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
68401Gzmkgranzyme K24484081144848829Rat
619718Sv2csynaptic vesicle glycoprotein 2c22723293327428479Rat
619752Acot12acyl-CoA thioesterase 1222298686723027538Rat
2586F2rcoagulation factor II (thrombin) receptor22686934326885856Rat
3281Pde4dphosphodiesterase 4D24001493341529190Rat
2238C6complement C625384602853921279Rat
61957Isl1ISL LIM homeobox 124807941248090704Rat
70970Hmgcs13-hydroxy-3-methylglutaryl-CoA synthase 125164936851667100Rat
70974Kif2akinesin family member 2A23836799838431237Rat
2403Crhbpcorticotropin releasing hormone binding protein22669240326704710Rat
620058PolkDNA polymerase kappa22782222827882331Rat
2633Fstfollistatin24612326046130584Rat
3043Map1bmicrotubule-associated protein 1B23081726130910458Rat
619937Ccl28C-C motif chemokine ligand 2825160135451625999Rat
3387Prkaa1protein kinase AMP-activated catalytic subunit alpha 125424029854275978Rat
2687Ghrgrowth hormone receptor25254145252804960Rat
2923Itga1integrin subunit alpha 124664612546812237Rat
62046Thbs4thrombospondin 422398315824025289Rat
69419Ccnhcyclin H21583506415855648Rat
69413Rasgrf2RAS protein-specific guanine nucleotide-releasing factor 222311361323361537Rat
621007Dab2DAB adaptor protein 225551469255567476Rat
621496Bhmtbetaine-homocysteine S-methyltransferase22485987124879449Rat
727842LOC252890Z39 small nucleolar RNA21684197116842030Rat
620688Hcn1hyperpolarization-activated cyclic nucleotide-gated potassium channel 124949577149899983Rat
621696Srek1splicing regulatory glutamic acid and lysine rich protein 123484954834885120Rat
621431LifrLIF receptor subunit alpha25622439356292988Rat
620249Cetn3centrin 321208902512101828Rat
2412Hapln1hyaluronan and proteoglycan link protein 122063164020696388Rat
68345Hspb3heat shock protein family B (small) member 324529528545295999Rat
621571Serinc5serine incorporator 522384689923950346Rat
621281Naip6NLR family, apoptosis inhibitory protein 623150742331559098Rat
620760Plk2polo-like kinase 224196917641974945Rat
621832Plpp1phospholipid phosphatase 124443900244500430Rat
628640Gzmagranzyme A24474056944752502Rat
621632Itga2integrin subunit alpha 224652034546621487Rat
628725Homer1homer scaffold protein 122454277724645715Rat
2606Fgf10fibroblast growth factor 1025080117150878218Rat
727945Otporthopedia homeobox22610815826116359Rat
620923Rab3cRAB3C, member RAS oncogene family24162772041843541Rat
620453Dmgdhdimethylglycine dehydrogenase22491260024987533Rat
621587Trim23tripartite motif-containing 2323530240535335746Rat
621067Embembigin24907050949125042Rat
620966Map3k1mitogen-activated protein kinase kinase kinase 124334857243414706Rat
3156Ndufs6-ps1NADH:ubiquinone oxidoreductase subunit S6, pseudogene 122720170627202241Rat
727976Sgtbsmall glutamine rich tetratricopeptide repeat co-chaperone beta23523304535269527Rat
621124Cdk7cyclin-dependent kinase 723184055831865422Rat
2903Il6stinterleukin 6 cytokine family signal transducer24406597944106255Rat
2500Dhfrdihydrofolate reductase22358587623611199Rat
1305805Card6caspase recruitment domain family, member 625419434354206902Rat
621518Nlnneurolysin23513363435232927Rat
628641Ptger4prostaglandin E receptor 425433056354347451Rat
620755Smn1survival of motor neuron 1, telomeric23149001831501065Rat
620319C9complement C925557309455621345Rat
61977Ckmt2creatine kinase, mitochondrial 222307991823110518Rat
620866F2rl1F2R like trypsin receptor 122677227426785226Rat
620871F2rl2coagulation factor II (thrombin) receptor-like 222697205426977098Rat
621039Rps23ribosomal protein S2322207933922080909Rat
620318C7complement C725408811654165102Rat
620089Oclnoccludin23165721731707466Rat
621712Foxd1forkhead box D122970255829704978Rat
2272CartptCART prepropeptide23125509831257452Rat
735041Pde8bphosphodiesterase 8B22627511726479725Rat
3537Rasa1RAS p21 protein activator 121585770415940757Rat
1307506Gpx8glutathione peroxidase 824467644844680042Rat
2803Hmgcr3-hydroxy-3-methylglutaryl-CoA reductase22799752328018983Rat
619940Vcanversican22076171820860637Rat
1306363Wdr41WD repeat domain 4122622279726273849Rat
1305799Depdc1bDEP domain containing 1B23989116339963779Rat
1306438Tent2terminal nucleotidyltransferase 222438013524432099Rat
71013Esm1endothelial cell-specific molecule 124487606744884805Rat
727861Taf9TATA-box binding protein associated factor 923179431631798324Rat
1306592EgflamEGF-like, fibronectin type III and laminin G domains25630194556476665Rat
2845Htr1a5-hydroxytryptamine receptor 1A23669346236698026Rat
3660Selenopselenoprotein P25249812352508409Rat
1302983Osmroncostatin M receptor25590711955961373Rat
1307580Fbxo4F-box protein 425317479853187792Rat
1307450Zcchc9zinc finger CCHC-type containing 922303815623048249Rat
1306703Mblac2metallo-beta-lactamase domain containing 221198607512028882Rat
1307607Hexbhexosaminidase subunit beta22848399728504165Rat
1307061Arhgef28Rho guanine nucleotide exchange factor 2822926388829560595Rat
1308512Bdp1B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB23137840731470140Rat
1306583Trappc13trafficking protein particle complex subunit 1323527049535302049Rat
1307735Ankrd55ankyrin repeat domain 5524388387743983820Rat
1309515Rad17RAD17 checkpoint clamp loader component23176426031794542Rat
1305984MtrexMtr4 exosome RNA helicase24450032644560624Rat
1303108Ankra2ankyrin repeat family A member 222961286729623748Rat
1305413Mroh2bmaestro heat-like repeat family member 2B25400387054063992Rat
2291Ccnb1cyclin B123191219031921163Rat
1307224RictorRPTOR independent companion of MTOR, complex 225581187755903893Rat
3625Scamp1secretory carrier membrane protein 122543395825516734Rat
1310204Ppwd1peptidylprolyl isomerase domain and WD repeat containing 123533730135360661Rat
1308095Btf3basic transcription factor 322965976429666898Rat
1309315Kgd4alpha-ketoglutarate dehydrogenase subunit 423187054931878335Rat
1309131Cert1ceramide transporter 122788254627987090Rat
3329Pik3r1phosphoinositide-3-kinase regulatory subunit 123287894232963668Rat
1310461Cenpkcentromere protein K23536039035421372Rat
1310367Snx18sorting nexin 1824523232545258345Rat
1311538Tbcatubulin folding cofactor A22601171426065909Rat
1309697Mrps30mitochondrial ribosomal protein S3025045625350463128Rat
1559647Psmc6-ps2proteasome 26S subunit, ATPase 6, pseudogene 221653532416536530Rat
1310992Utp15UTP15, small subunit processome component22959440529612819Rat
1311881Slc38a9solute carrier family 38, member 924429163744374897Rat
2158Arsbarylsulfatase B22500221025162675Rat
1311570Ercc8ERCC excision repair 8, CSA ubiquitin ligase complex subunit23964739339686229Rat
1311752Dimt1DIM1 rRNA methyltransferase and ribosome maturation factor23834308638368242Rat
1560402Pgk1l1phosphoglycerate kinase 1 like 124275460542755929Rat
1310888Aggf1angiogenic factor with G patch and FHA domains 122661933626646050Rat
1308372Tnpo1transportin 123020752930300162Rat
1305668Paip1poly(A) binding protein interacting protein 125152319051550241Rat
2300145Cox7ccytochrome c oxidase subunit 7C21684177116843796Rat
1306909Marveld2MARVEL domain containing 223174265231764150Rat
1310697Cwc27CWC27 spliceosome associated cyclophilin23576467435975908Rat
1308170Cd180CD180 molecule23385594033870046Rat
1305938Rimoc1RAB7A interacting MON1-CCZ1 complex subunit 125318978753203981Rat
1310560Elovl7ELOVL fatty acid elongase 723978922939858579Rat
1308793Ddx4DEAD-box helicase 424422794644282867Rat
1305492Gpbp1GC-rich promoter binding protein 124302350443091146Rat
1306227C2h5orf34similar to human chromosome 5 open reading frame 3425155322351577090Rat
1307638Zfp131zinc finger protein 13125172277451753662Rat
1309854Gfm2GTP dependent ribosome recycling factor mitochondrial 222844945228488200Rat
1306931Slc30a5solute carrier family 30 member 523194574531975969Rat
1307678Adamts6ADAM metallopeptidase with thrombospondin type 1 motif, 623542148335633305Rat
1310308Ptcd2pentatricopeptide repeat domain 223071227630739968Rat
1306624Zswim6zinc finger, SWIM-type containing 623921113139378877Rat
1310256Ap3b1adaptor related protein complex 3 subunit beta 122560006925800937Rat
1309869Lhfpl2LHFPL tetraspan subfamily member 222528177125428128Rat
1310279Mccc2methylcrotonyl-CoA carboxylase subunit 223130492731375978Rat
1308448Plcxd3phosphatidylinositol-specific phospholipase C, X domain containing 325356702253746384Rat
1309504Actbl2actin, beta-like 224285802042860767Rat
1309660Tmem161btransmembrane protein 161B21471445114793809Rat
1308805Lysmd3LysM domain containing 321193378711939944Rat
1305356Srek1ip1SREK1-interacting protein 123597597835999636Rat
1309665Zbed3zinc finger, BED-type containing 322658762026600177Rat
1310139Mast4microtubule associated serine/threonine kinase family member 423389324134483682Rat
1310597Poc5POC5 centriolar protein22771974527748805Rat
1309360Rgs7bpregulator of G-protein signaling 7 binding protein23613394436231505Rat
1563891Gcnt4glucosaminyl (N-acetyl) transferase 422825332528283082Rat
1311241Mier3MIER family member 324328754643316422Rat
1560462Rpl10a-ps14ribosomal protein L10A, pseudogene 1423719203637193479Rat
1560484Rpl4-ps6ribosomal protein L4, pseudogene 625498492954986241Rat
1564936Atp6ap1lATPase H+ transporting accessory protein 1 like22203754222079376Rat
1565105Serf1small EDRK-rich factor 123147590231482030Rat
1566212Atp5mc2l2ATP synthase membrane subunit c locus 2 like 222683636226836853Rat
1564606Rpl23al1ribosomal protein L23A like 123845281438453384Rat
1562550Tmem267transmembrane protein 26725158021051588937Rat
1563954Msh3mutS homolog 322344432623585777Rat
1564672Shisal2bshisa like 2B23600262236019529Rat
1561129Tmem174transmembrane protein 17422999207029993601Rat
1561503Ccdc152coiled-coil domain containing 15225250798752532880Rat
1561520Ftl1l6ferritin light chain 1 like 625139226551393293Rat
1565217Ccnocyclin O24463087344633912Rat
1359591Pelopelota mRNA surveillance and ribosome rescue factor24679785346799621Rat
1560158Ndufaf2NADH:ubiquinone oxidoreductase complex assembly factor 223953568039647378Rat
1562952Erbinerbb2 interacting protein23492696235028440Rat
1564042Ttc33tetratricopeptide repeat domain 3325427990654326851Rat
1562968Ssbp2single-stranded DNA binding protein 222265048822938669Rat
1563421Fyb1FYN binding protein 125562158555781206Rat
1561161Cspg4bchondroitin sulfate proteoglycan 4B24493980745008284Rat
1561673Ccdc125coiled-coil domain containing 12523180912031835538Rat
1359492Tmem171transmembrane protein 17123003527830045996Rat
1559914Naip5NLR family, apoptosis inhibitory protein 523155770631608722Rat
1303152Enc1ectodermal-neural cortex 122855067028562591Rat
1311133Ipo11importin 1123816968838342929Rat
1310499Gtf2h2general transcription factor IIH subunit 223162375231652697Rat
1561110Fam151bfamily with sequence similarity 151, member B22367431723710420Rat
1562101Adgrv1adhesion G protein-coupled receptor V121133143411911713Rat
1562395Spz1spermatogenic leucine zipper 122379674123798337Rat
621335Nsa2NSA2 ribosome biogenesis factor22844314228449393Rat
1560076Rpl29-ps23ribosomal protein L29, pseudogene 2323972031939720958Rat
1359418Bhmt2betaine-homocysteine S-methyltransferase 222489552524912475Rat
1311829Mrps27mitochondrial ribosomal protein S2723074000730808577Rat
1359573Xrcc4X-ray repair cross complementing 422094846421197705Rat
1308116Nim1kNIM1 serine/threonine protein kinase25167076451714782Rat
1584743Npm1-ps10nucleophosmin 1, pseudogene 1022760092327601921Rat
1587624Atg10autophagy related 1022210930422398313Rat
1585838Ube2v1-ps20ubiquitin conjugating enzyme E2 V1, pseudogene 2023124673231247635Rat
1583002Mtx3metaxin 322406633224079708Rat
1359477Mocs2molybdenum cofactor synthesis 224650458846516327Rat
1584008Oxct13-oxoacid CoA transferase 125323637053384715Rat
1565396Fcho2FCH and mu domain containing endocytic adaptor 223007914330181639Rat
1586478Il31rainterleukin 31 receptor A24411874844189943Rat
1587383Etv5-ps2ETS variant transcription factor 5, pseudogene 225487215354875943Rat
1587384Parp8poly (ADP-ribose) polymerase family, member 824867940548848700Rat
1582992Cmya5cardiomyopathy associated 522427952024378253Rat
1583506Cenphcentromere protein H23189667531910179Rat
1566344Eef1a1-ps13eukaryotic translation elongation factor 1 alpha 1, pseudogene 1325353051053547324Rat
1584143Cdc20bcell division cycle 20B24468834944738056Rat
1584164Mcidasmulticiliate differentiation and DNA synthesis associated cell cycle protein24463682044644551Rat
1563119Mef2cmyocyte enhancer factor 2C21397329914136065Rat
1562902S100zS100 calcium binding protein Z22673779626753611Rat
1588593Spin1-ps1spindlin 1, pseudogene 121916563719166834Rat
1589594Nt5el-ps15' nucleotidase, ecto like, pseudogene 123624601036326648Rat
1564784Zfyve16zinc finger FYVE-type containing 1622371301823757576Rat
1593792Polr3gRNA polymerase III subunit G21194521511986125Rat
1587346Nntnicotinamide nucleotide transhydrogenase25141141351505125Rat
1587155Prdx1-ps6peroxiredoxin 1, pseudogene 622660316726603947Rat
1592273Dnaja1-ps4DnaJ heat shock protein family (Hsp40) member A1, pseudogene 424996595249971527Rat
1592324Rnps1-ps4RNA binding protein with serine rich domain 1, pseudogene 424918239849183276Rat
1587804Eef1d-ps1eukaryotic translation elongation factor 1 delta, pseudogene 121678312016783583Rat
1587780Dcbld1-ps1discoidin, CUB and LCCL domain containing 1, pseudogene 121695316516959244Rat
1587831Gemin8-ps6gem (nuclear organelle) associated protein 8, pseudogene 621659195116592611Rat
1585493Slc25a5-ps7solute carrier family 25 member 5, pseudogene 724210259442103565Rat
1588877Eef1a1-ps7eukaryotic translation elongation factor 1 alpha 1, pseudogene 722062239720623912Rat
1590893Fam169afamily with sequence similarity 169, member A22838416228441361Rat
1586621GaptGrb2-binding adaptor protein, transmembrane24192753341932120Rat
1588887Edil3EGF like repeats and discoidin domains 321989039620405028Rat
1594500Rps9-ps4ribosomal protein S9, pseudogene 425658228856582972Rat
1594504Mfap1a-ps1microfibrillar-associated protein 1A, pseudogene 124689250046893901Rat
1594505Nop16-ps4NOP16 nucleolar protein, pseudogene 424540489145406036Rat
1594507Rpl21-ps21ribosomal protein L21, pseudogene 2123165479631655280Rat
1594508Atp5f1b-ps2ATP synthase F1 subunit beta, pseudogene 222913567729137702Rat
1594510Mtf2-ps1metal response element binding transcription factor 2, pseudogene 122771107527712546Rat
1594513Vdac1-ps1voltage-dependent anion channel 1, pseudogene 121719131017192198Rat
1595695Tuba1a-ps3tubulin, alpha 1A, pseudogene 321190356111905006Rat
1595422Nme2-ps7NME/NM23 nucleoside diphosphate kinase 2, pseudogene 723347098033472009Rat
1585601Jmyjunction mediating and regulatory protein, p53 cofactor22466210424730955Rat
1590323H2bl1H2B.L histone variant 123038710930387584Rat
1593816Rpl17-ps7ribosomal protein L17, pseudogene 721192000311920552Rat
1594380Ndufs4NADH:ubiquinone oxidoreductase subunit S424595132746061829Rat
1594381Rpl17l3ribosomal protein L17 like 323692858836929161Rat
1594382Mif-ps2macrophage migration inhibitory factor, pseudogene 223098056430981584Rat
1594383Ankrd34bankyrin repeat domain 34B22365108323668041Rat
1594384Tada3-ps1transcriptional adaptor 3, pseudogene 121570446215705839Rat
1594512Hnrnpk-ps2heterogeneous nuclear ribonucleoprotein K, pseudogene 222381914923820836Rat
1595064Rnf180ring finger protein 18023633028536511168Rat
1597407Arl15ADP-ribosylation factor like GTPase 1524543822145822562Rat
1596440Snrpnl3small nuclear ribonucleoprotein polypeptide N like 322541765525418541Rat
2318781Setd9-ps1SET domain containing, pseudogene 124331935943322764Rat
2319559Rps15al4ribosomal protein S15A-like 425443754454438039Rat
2318361Dhx29DExH-box helicase 2924456065344611450Rat
2320545Zbtb26-ps1zinc finger and BTB domain containing 26, pseudogene 121738010717440459Rat
2322829Med27-ps1mediator complex subunit 27, pseudogene 125290706352909893Rat
2320700LOC100361161bolA-like 1-like23172813531729259Rat
2322904Zfp366zinc finger protein 36623057855230640546Rat
2320812Hdac1-ps8Histone deacetylase 1, pseudogene 823009310330100126Rat
2321734Iqgap2IQ motif containing GTPase activating protein 222689483627170270Rat
2323229Zfp131l1zinc finger protein 131 like 125175256851765798Rat
2322653Snurf-ps1SNRPN upstream open reading frame, pseudogene 122541723325417480Rat
2321913Fbl-ps1fibrillarin, pseudogene 121248019912571223Rat
2323318Tmem167atransmembrane protein 167A22119779921216746Rat
2323520Ankrd31ankyrin repeat domain 3122807918728241722Rat
2323540LOC100359700eukaryotic translation initiation factor 1-like24539105545392369Rat
2324334Blvra-ps1biliverdin reductase A, pseudogene 124553851845540448Rat
4888542Mir3597-2microRNA 3597-221419771114197828Rat
4888547Mir449cmicroRNA 449c24466917944669277Rat
2325413Mir582microRNA 58224092857140928651Rat
2325536Mir449amicroRNA 449a24467071444670804Rat
2325602Mir9-2microRNA 9-221419772414197810Rat
2324600Smim15small integral membrane protein 1523952825639533416Rat
2325067Ankdd1bankyrin repeat and death domain containing 1B22775030127814291Rat
6488109LOC100912266uncharacterized LOC10091226622655406226563136Rat
6499419Csnk1a1-ps2casein kinase 1, alpha 1, pseudogene 221934243119343443Rat
6502717Rplp0-ps3ribosomal protein lateral stalk subunit P0, pseudogene 321447911014479737Rat
7497054LOC102546726uncharacterized LOC10254672623355267833777029Rat
7497849LOC102548571uncharacterized LOC10254857125245354252486117Rat
7387335Ak6adenylate kinase 623179431631806375Rat
7525791LOC102555062uncharacterized LOC10255506221594866515969617Rat
7505570LOC102551027uncharacterized LOC10255102722895496928999400Rat
7496117LOC10254886060S ribosomal protein L19-like21258207912590457Rat
7534134LOC102550255uncharacterized LOC10255025525516220155180537Rat
7512922LOC102556362uncharacterized LOC10255636225159536651601133Rat
7517146LOC102546512uncharacterized LOC10254651223852728838537176Rat
7539922LOC102551194uncharacterized LOC10255119421661379816615809Rat
7503935Rpl21-ps11ribosomal protein L21, pseudogene 1125602493656025455Rat
7613080LOC102551263uncharacterized LOC10255126322909986529102988Rat
7613395LOC102555263uncharacterized LOC10255526323210901732216220Rat
7635624LOC102553770uncharacterized LOC10255377023106828531106257Rat
7637192Hnrnpr-ps1heterogeneous nuclear ribonucleoprotein R, pseudogene 124433760744340578Rat
7637193Rpl29-ps16ribosomal protein L29, pseudogene 1624747080547471791Rat
7652976LOC102554243uncharacterized LOC10255424321456843714572006Rat
7638416LOC102550768uncharacterized LOC10255076822879516728849077Rat
7654966LOC102553545uncharacterized LOC10255354523091063030933322Rat
7627562LOC102557393uncharacterized LOC10255739323174211431746654Rat
7643568LOC102547847uncharacterized LOC10254784725206884452075436Rat
7570025LOC102548637uncharacterized LOC10254863725280511752812142Rat
7571143LOC102551152uncharacterized LOC10255115222907398029084474Rat
7572801LOC102548141uncharacterized LOC10254814122476423824771284Rat
7557368LOC102556643uncharacterized LOC10255664325192915351940031Rat
7599584LOC102554363uncharacterized LOC10255436321532684715337972Rat
7606174LOC102554307uncharacterized LOC10255430724364744143693619Rat
7566528LOC102555137AT-rich interactive domain-containing protein 4A-like21597062615973408Rat
7567660LOC102547360uncharacterized LOC10254736025163178951640783Rat
7567902LOC102549347uncharacterized LOC10254934723950006339528170Rat
7691404LOC102557105MLV-related proviral Env polyprotein-like24903190549036174Rat
7736543LOC102554057uncharacterized LOC10255405724349634343504404Rat
7751753LOC102546727uncharacterized LOC10254672723897359938994374Rat
7672686Aktip-ps2AKT interacting protein, pseudogene 223505758135059009Rat
7695496LOC102556361uncharacterized LOC10255636123761814037642341Rat
7676687LOC102546725uncharacterized LOC10254672523004768530053470Rat
7705669Stmnl-ps4stathmin like, pseudogene 421467558414683994Rat
7683682LOC102553935uncharacterized LOC10255393524342026843436706Rat
7724377Septin7-ps2septin 7, pseudogene 225393384753941923Rat
7716052LOC102548698uncharacterized LOC10254869822655721926579051Rat
7668930LOC102556051uncharacterized LOC10255605123253577832855354Rat
7700687LOC102548142uncharacterized LOC10254814225217956352183483Rat
7679991Cbx3-ps1chromobox 3, pseudogene 122818840428189044Rat
7680557LOC102554306uncharacterized LOC10255430621483017614840060Rat
7710292LOC102552429uncharacterized LOC10255242921391630013972744Rat
9087824LOC103691411uncharacterized LOC10369141121379350613882765Rat
9137253LOC103691419uncharacterized LOC10369141922281453422818085Rat
9137783LOC103691475uncharacterized LOC10369147525438126754427711Rat
9179183LOC10369508940S ribosomal protein S13 pseudogene22923873429239646Rat
9150057LOC103691449uncharacterized LOC10369144923913897439167216Rat
9151583LOC103691446uncharacterized LOC10369144623719043137463186Rat
9106115LOC10369142560S ribosomal protein L7a pseudogene21326822913268696Rat
9191663LOC103691443uncharacterized LOC10369144323344482133447613Rat
9193186LOC103691468uncharacterized LOC10369146825196693351972303Rat
9201190LOC103691453activated RNA polymerase II transcriptional coactivator p15 pseudogene24329894943300263Rat
9208714LOC103691456uncharacterized LOC10369145624389251943954354Rat
9307820LOC103691422uncharacterized LOC10369142222446878724481554Rat
9353912Anxa2rl-ps1annexin A2 receptor like, pseudogene 125186121051861735Rat
9225015LOC103694538uncharacterized LOC10369453821735981217380100Rat
9314470Rpl36l7ribosomal protein L36 like 722488384524884266Rat
9243561LOC103691473V-type proton ATPase subunit e 1 pseudogene25285185152852085Rat
9362811LOC103691412uncharacterized LOC10369141221409777814109233Rat
9428698LOC103691472uncharacterized LOC10369147225251723252536035Rat
9469491LOC103691462serine/arginine-rich splicing factor 3 pseudogene24412959044130630Rat
9436047LOC103691451uncharacterized LOC10369145124272675242733899Rat
9476424Rpl39l5ribosomal protein L39 like 524747242447472576Rat
9411836LOC103691459uncharacterized LOC10369145924630205646347633Rat
9453411LOC103691452uncharacterized LOC10369145224283068542950401Rat
10043200Rps27a-ps29ribosomal protein S27a, pseudogene 2921338964113390087Rat
11449327LOC108349941uncharacterized LOC10834994123877523038811284Rat
11474944LOC108349945uncharacterized LOC10834994524526939345274138Rat
11474953LOC10835016760S ribosomal protein L17 pseudogene24753795647538570Rat
11458063LOC108350222uncharacterized LOC10835022222409945324103141Rat
11367373LOC108350221histone H2A.Z pseudogene21669623316696586Rat
11451820LOC108349943uncharacterized LOC10834994324158493541590024Rat
11371833LOC10834994960S ribosomal protein L15 pseudogene25151420551515270Rat
11452971LOC108349942uncharacterized LOC10834994223903661239069876Rat
11413279LOC108349939uncharacterized LOC10834993923861681938657106Rat
11419093LOC108350211uncharacterized LOC10835021123984997239855243Rat
11423879LOC108350223uncharacterized LOC10835022322611811926123605Rat
11426534LOC10834991660S ribosomal protein L7a pseudogene21441693714417836Rat
11374184LOC108349924NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 pseudogene22838740428399084Rat
11374962LOC108349922uncharacterized LOC10834992222590716025922806Rat
11375591LOC10835015340S ribosomal protein S6 pseudogene22114137121151233Rat
11387679LOC108349948uncharacterized LOC10834994824793105447941984Rat
11378089Gapdh-ps22Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 2225309889553100054Rat
11388888LOC108349921uncharacterized LOC10834992122418322224209061Rat
11402434LOC108349917uncharacterized LOC10834991721451189214552563Rat
11380414LOC108349915uncharacterized LOC10834991521327087513302846Rat
11390954LOC108350224uncharacterized LOC10835022423313033033134546Rat
11381588LOC108349935uncharacterized LOC10834993523384297833850878Rat
11382661LOC108349957uncharacterized LOC10834995725631680056349595Rat
11503988LOC108349927uncharacterized LOC10834992723002970630033330Rat
11506640LOC108349914uncharacterized LOC10834991421215497012204382Rat
11487276LOC108350210uncharacterized LOC10835021024102007441032958Rat
11494182Rpl21l6ribosomal protein L21 like 623252930632531079Rat
41167126LOC120100700uncharacterized LOC12010070023939181139400380Rat
41235092LOC120100733uncharacterized LOC12010073325562890155632966Rat
41381356LOC120093165uncharacterized LOC12009316525202302952027944Rat
41087919LOC120101241small nucleolar RNA SNORA2422509833125098459Rat
41113370LOC120101138U6 spliceosomal RNA23552861635528722Rat
41168070LOC120101349small nucleolar RNA SNORA1724997342749973549Rat
41168552Trnat-agu8transfer RNA threonine (anticodon AGU) 824599777145997843Rat
41204573LOC120100702uncharacterized LOC12010070223949465539499673Rat
41284150LOC120101361small nucleolar RNA SNORA4022927320929273341Rat
41141093LOC120100722uncharacterized LOC12010072225187453551883271Rat
41170998LOC120100680uncharacterized LOC12010068022978892429842718Rat
41251155Rpl7a-ps13ribosomal protein L7a, pseudogene 1323201909732019924Rat
41279240LOC120100703uncharacterized LOC12010070324305524743055771Rat
41325769LOC120101262small nucleolar RNA SNORA4823344337933443518Rat
41358011Hnrnpa1-ps25heterogeneous nuclear ribonucleoprotein A1, pseudogene 2525016131450162965Rat
41115917LOC120100658uncharacterized LOC12010065821343900513528948Rat
41172051LOC120100725uncharacterized LOC12010072525197693651989635Rat
41172133LOC120101204U6 spliceosomal RNA22984966929849772Rat
41207854LOC120101081uncharacterized LOC12010108124106008041067591Rat
41253562LOC120100713uncharacterized LOC12010071324538796445393370Rat
41253697LOC120100554uncharacterized LOC12010055422990222129907787Rat
41326689LOC120100662uncharacterized LOC12010066221530437215326712Rat
41117892LOC120101248small nucleolar RNA SNORA4424661684846616952Rat
41328657Snord72small nucleolar RNA, C/D box 7225421716054217239Rat
41361600Mrrf-ps1mitochondrial ribosome recycling factor, pseudogene 121168969211690540Rat
41175335LOC120101191U6 spliceosomal RNA21372052213720616Rat
41210646LOC120100677uncharacterized LOC12010067722873301528741444Rat
41330271LOC120100660uncharacterized LOC12010066021459565214715634Rat
41389417LOC120100661uncharacterized LOC12010066121526485415280304Rat
41391875Ube2l3-ps3ubiquitin-conjugating enzyme E2L 3, pseudogene 321163469611636749Rat
41122070Snora47small nucleolar RNA, H/ACA box 4722659426026594397Rat
41151137LOC120100552uncharacterized LOC12010055222717960227186615Rat
41190503LOC120100693uncharacterized LOC12010069323367858233734740Rat
41213139LOC120100718uncharacterized LOC12010071824648879546493298Rat
41213451Rnu6-446RNA, U6 small nuclear 44625175073951750849Rat
41394010Rpl37ribosomal protein L3725421546954217429Rat
41213703LOC12010055760S ribosomal protein L29-like23971531539716074Rat
41265315LOC120100699uncharacterized LOC12010069923892561638943051Rat
41265375LOC120101296small nucleolar RNA SNORA1725407619354076322Rat
41266376LOC120100553uncharacterized LOC12010055322851713628519470Rat
41266421LOC120100704uncharacterized LOC12010070424338422243413501Rat
41343784LOC120101265small nucleolar RNA SNORA4825127413651274279Rat
41368707LOC120101082uncharacterized LOC12010108224106763841091014Rat
41124508Anxa2rl-ps7annexin A2 receptor like, pseudogene 725205838852059000Rat
41124781LOC120101383U1 spliceosomal RNA22717466527174822Rat
41156848LOC120101369U6atac minor spliceosomal RNA25282301252823132Rat
41181423LOC120100685uncharacterized LOC12010068523110902531110232Rat
41215863Rps26-ps8ribosomal protein S26, pseudogene 822809326228094806Rat
41268252Trnal-aag15transfer RNA leucine (anticodon AAG) 1522289107822891152Rat
41288964LOC120100698uncharacterized LOC12010069823886524538876526Rat
41345329Snrpg-ps5small nuclear ribonucleoprotein polypeptide G, pseudogene 525429780354301899Rat
41396312LOC120100697uncharacterized LOC12010069723866775238693190Rat
41102332LOC120101160U6 spliceosomal RNA21267725212677358Rat
41157206LOC120100679uncharacterized LOC12010067922966705629674448Rat
41182925LOC120100730uncharacterized LOC12010073025433683354341457Rat
41269108Anxa2rl-ps3annexin A2 receptor like, pseudogene 325191837451918968Rat
41346751LOC120101137U6 spliceosomal RNA22641538926415495Rat
41347556C1h11orf98-ps1similar to human chromosome 11 open reading frame 98, pseudogene 123561335735613723Rat
41371773LOC120100686uncharacterized LOC12010068623111348831132788Rat
41103209Anxa2rl-ps2annexin A2 receptor like, pseudogene 225200046852001148Rat
41160333LOC120100727uncharacterized LOC12010072725215394452162355Rat
41183723LOC120100690uncharacterized LOC12010069023189724131902191Rat
41184943LOC120101307small nucleolar RNA SNORA1722297417022974295Rat
41185079LOC120101129U4 spliceosomal RNA24814008348140209Rat
41292358LOC120100719uncharacterized LOC12010071925159452351596329Rat
41348725LOC120101157U6 spliceosomal RNA23858377138583877Rat
41399437LOC120100710uncharacterized LOC12010071024506283845068931Rat
41072327Rnu6-985RNA, U6 small nuclear 98524682793846828043Rat
41230016LOC120100683uncharacterized LOC12010068323052273030537147Rat
41350418Shld3shieldin complex subunit 323529725535302071Rat
41374960LOC120100726uncharacterized LOC12010072625210296052107722Rat
41072862LOC120100657uncharacterized LOC12010065721325260413344832Rat
41080950LOC120100666uncharacterized LOC12010066622342734623431346Rat
41106288LOC120100548uncharacterized LOC12010054821529537015301580Rat
41131202LOC120100671uncharacterized LOC12010067122709867227103241Rat
41272581Lrrc70leucine rich repeat containing 7023821587138218476Rat
41401973LOC120100716uncharacterized LOC12010071624574321645773022Rat
41401989LOC120100672uncharacterized LOC12010067222709767727102253Rat
41402336LOC120100724uncharacterized LOC12010072425194594851952730Rat
41081966Trnap-agg68transfer RNA proline (anticodon AGG) 6824319849743198577Rat
41083090LOC120101283small nucleolar RNA SNORA1722969142429691555Rat
41164131Gdf3l1growth differentiation factor 3 like 124343872443442856Rat
41232309Rpl7a-ps12ribosomal protein L7a, pseudogene 1221630069116367393Rat
41232441LOC120101238small nucleolar RNA SNORA1523402219734022326Rat
41232818LOC120100714uncharacterized LOC12010071424532182745369348Rat
41274238LOC120093149uncharacterized LOC12009314925203387852045558Rat
41403936LOC120100676uncharacterized LOC12010067622852018928542905Rat
41404161Anxa2rl-ps6annexin A2 receptor like, pseudogene 625216521252165896Rat
41083925LOC120101290small nucleolar RNA SNORA1725377859953778725Rat
41109932LOC120100706uncharacterized LOC12010070624404788844057753Rat
41132845LOC120101181U6 spliceosomal RNA24403425044034357Rat
41165958LOC120101347small nucleolar RNA SNORA1723106447131064584Rat
40971037LOC120100688uncharacterized LOC12010068823171368231723623Rat
41010767LOC120100712uncharacterized LOC12010071224516406845188903Rat
40973599Rpl32-ps16ribosomal protein L32, pseudogene 1624509889445099915Rat
41015821LOC120101076uncharacterized LOC12010107623391285733914443Rat
41341754LOC120100665uncharacterized LOC12010066522257644822585015Rat
40954385LOC120101342small nucleolar RNA SNORA1723644024536440364Rat
40980049Hmgb1-ps16high-mobility group box 1, pseudogene 1625535979355406351Rat
40929069Rnu6-180RNA, U6 small nuclear 18022822452328224621Rat
40930512LOC120100715uncharacterized LOC12010071524533384945344756Rat
40930809LOC120100708uncharacterized LOC12010070824500810145013288Rat
40932300LOC120101123small nucleolar RNA U324981712849817210Rat
40982580LOC120101075uncharacterized LOC12010107523389787433938550Rat
40960165Mir9-2hgMir9-2 host gene21417428814363747Rat
40934274LOC120101078uncharacterized LOC12010107823409371134095907Rat
40986804LOC120101201U6 spliceosomal RNA22740036427400468Rat
41007476Casp6-ps3caspase 6, pseudogene 323351689533520476Rat
41007563Rnu4-64RNA, U4 small nuclear 6423171010731710236Rat
41010025LOC120101274small nucleolar RNA SNORA4822032253220322680Rat
40966847LOC120100678uncharacterized LOC12010067822884711828850605Rat
40967037KtI12-ps1KtI12 chromatin associated, pseudogene 123185263531853927Rat
40991465LOC120100717uncharacterized LOC12010071724612810946130571Rat
40941687LOC120100669uncharacterized LOC12010066922691733826929267Rat
40942807Rnu6-572RNA, U6 small nuclear 57224799928247999387Rat
40993190Trnav-aac36transfer RNA valine (anticodon AAC) 3624060367340603753Rat
40996532LOC120100670uncharacterized LOC12010067022698515927001342Rat
41046346LOC120100687uncharacterized LOC12010068723148769831489974Rat
41047976Anxa2rl-ps5annexin A2 receptor like, pseudogene 525205628752056881Rat
41074866Coq10b-ps1coenzyme Q10B, pseudogene 125241448352418437Rat
41242421Anxa2rl-ps4annexin A2 receptor like, pseudogene 425200256852003181Rat
41024273LOC120101084uncharacterized LOC12010108424131450641320081Rat
41048152LOC120100731uncharacterized LOC12010073125453591354549230Rat
41075573LOC120100551uncharacterized LOC12010055122306050123065411Rat
41076301LOC120100663uncharacterized LOC12010066322205753722070249Rat
41244732LOC120101365small nucleolar RNA SNORD7822668496026685025Rat
41026454LOC120100681uncharacterized LOC12010068123002762630029202Rat
41077530LOC120101211small nucleolar RNA SNORD3625147495151475023Rat
41078389LOC120101271small nucleolar RNA SNORA4822509230325092451Rat
41078971LOC120100692uncharacterized LOC12010069223343819133470167Rat
41247549Rpl36-ps4ribosomal protein L36, pseudogene23175516131755493Rat
41319327LOC120100732uncharacterized LOC12010073225557598655580855Rat
41029337Rps29-ps14ribosomal protein S29, pseudogene 1423574579835764518Rat
41030574LOC120100694uncharacterized LOC12010069423509379335099838Rat
41053152LOC120100556uncharacterized LOC12010055623460940034615966Rat
41332544LOC120100558uncharacterized LOC12010055825292745152929546Rat
41144197LOC120101125U4 spliceosomal RNA25642213356422274Rat
41256822LOC120100656uncharacterized LOC12010065621217127812173747Rat
41338505Sdhc-ps1succinate dehydrogenase complex subunit C, pseudogene 122654966026551984Rat
41056460LOC120101144U6 spliceosomal RNA22055168520551791Rat
41152305LOC120100667uncharacterized LOC12010066722511381725136139Rat
41152499LOC120100720uncharacterized LOC12010072025171595651722569Rat
41056464LOC120101077uncharacterized LOC12010107723447471034477122Rat
41056682Fkbp3-ps1FKBP prolyl isomerase 3, pseudogene 125642709656427708Rat
41258804LOC120101170U6 spliceosomal RNA23347197733472081Rat
41267733Scarna18small Cajal body-specific RNA 1822120778021207914Rat
41318360Trnap-ggg1transfer RNA proline (anticodon GGG) 121265585012655924Rat
41224681LOC120100664uncharacterized LOC12010066422223421222241323Rat
41337111Ndufaf4-ps3NADH:ubiquinone oxidoreductase complex assembly factor 4, pseudogene 325176779751768492Rat
41062866Ormdl1-ps10ORMDL sphingolipid biosynthesis regulator 1, pseudogene 1021907983519081617Rat
41035860Eif5bleukaryotic translation initiation factor 5B like23030012230302657Rat
41036237Egln1-ps5egl-9 family hypoxia-inducible factor 1, pseudogene 523974837339749980Rat
41235450Rnu2-66RNA, U2 small nuclear 6625079720950797380Rat
41064988LOC120100684uncharacterized LOC12010068423103987531070957Rat
41042083LOC120100549uncharacterized LOC12010054921581321215815878Rat
41305934LOC120100709uncharacterized LOC12010070924502713745050955Rat
41019158LOC120100701uncharacterized LOC12010070123943749039446872Rat
41068271LOC120100707uncharacterized LOC12010070724441967844426375Rat
41307324LOC120100675uncharacterized LOC12010067522834563728381004Rat
41308381Pfdn2-ps1prefoldin subunit 2, pseudogene 124512485645125320Rat
41308577LOC120101083uncharacterized LOC12010108324027851940287658Rat
41240399LOC120101337small nucleolar RNA SNORA1725528960555289731Rat
41022741LOC120100691uncharacterized LOC12010069123261736632625636Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10602D2Wox1318224613067246130826Ratregion
10924D2Mit318424328333143283515Ratregion
10925D2Wox1213224328330043283432Ratregion
10966D2Uwm3420022720502327205223Ratregion
34278D2Mgh1412024315456643154682Ratregion
34334D2Mgh2115025604303156043181Ratregion
34397D2Mgh213324006794440068089Ratregion
34425D2Mgh113423513484135134970Ratregion
34514D2Mit3116523669541436695579Ratregion
36071D2Rat1517024713789847138066Ratregion
36089D2Rat416822146301221463190Ratregion
36145D2Rat7317022699957126999741Ratregion
36171D2Rat715022828423028284380Ratregion
36205D2Rat217321649174016491908Ratregion
36356D2Mit3318125314797553148156Ratregion
37520D2Rat11612023409103934091161Ratregion
35250D2Rat1313623808169038081826Ratregion
35292D2Rat1817624112578941125954Ratregion
35427D2Rat812523051368330513808Ratregion
36896D2Rat913023374476633744889Ratregion
36902D2Rat27017325382274753822920Ratregion
36912D2Rat117421185206211852238Ratregion
37018D2Rat1414224280460742804738Ratregion
37880D2Rat9422023152340931523629Ratregion
36428D2Rat1018623602318436023379Ratregion
36470D2Rat1617024366500843665178Ratregion
36532D2Rat1112723493800734938128Ratregion
36546D2Rat515022555172725551874Ratregion
36659D2Rat1713324826852848268661Ratregion
35699D2Rat614222796038727960546Ratregion
35941D2Rat1215423937437639374529Ratregion
39668D2Rat25424024390765543907909Ratregion
39728D2Rat19220622794025927940466Ratregion
39834D2Rat25218922490385324904033Ratregion
39874D2Rat19814824316236643162530Ratregion
38064D2Rat15322024278647942786683Ratregion
40446D2Rat29815524440524444405397Ratregion
40672D2Rat20220025172913951729300Ratregion
38414D2Rat9012123173567231735799Ratregion
38476D2Rat14211124259119142591300Ratregion
38576D2Rat18224322541342325413652Ratregion
38770D2Rat18421924034010640340327Ratregion
38770D2Rat18421924034010640340593Ratregion
38770D2Rat18421924034027540340327Ratregion
40024D2Rat18917521731960617319743Ratregion
40242D2Rat19417522997159329971768Ratregion
38950D2Rat17323724900313349003364Ratregion
38976D2Rat12421522691781726918153Ratregion
38976D2Rat12421522691794826918153Ratregion
39280D2Rat15410323091721630917319Ratregion
39460D2Rat20012624877318548773307Ratregion
39558D2Rat25316422655981726560006Ratregion
42104D2Arb124023852858938528872Ratregion
42284D2Rat36820221185628411856483Ratregion
42285D2Rat36924021382088313821113Ratregion
41158D2Rat19724824006783540068095Ratregion
41334D2Rat20117324965706949657252Ratregion
41380D2Rat19515523420301234203179Ratregion
41402D2Rat19116022255537922555559Ratregion
42559D2Rat30821622164545221645651Ratregion
42560D2Rat26615324445797644458140Ratregion
42561D2Rat30921722459022824590426Ratregion
42564D2Rat31210823946200539462111Ratregion
42566D2Rat26714124388870143888824Ratregion
42567D2Rat26924724468070444680951Ratregion
42569D2Rat31624024997620649976429Ratregion
42570D2Rat31412524904333549043454Ratregion
42571D2Rat31524124876408448764308Ratregion
42572D2Rat31821025146482951465022Ratregion
42575D2Rat31924225646919956469449Ratregion
42592D2Rat37722222258926722589503Ratregion
41016D2Rat19310123168580531685914Ratregion
41538D2Rat19913324124396341244106Ratregion
44552D9Wox2113623740565337405710Ratregion
44552D9Wox2113625038964950389703Ratregion
43463D2Got1422323750492237505150Ratregion
43464D2Got2119823808329338083501Ratregion
43465D2Got2018523808168538081874Ratregion
43466D2Got2328323751261037512902Ratregion
43467D2Got2414224157675441576896Ratregion
43468D2Got1918323785178437851955Ratregion
43469D2Got1717323988474239884915Ratregion
43470D2Got1819223936291339363105Ratregion
43471D2Got2223923927635739276596Ratregion
43472D2Got1613723903305739033194Ratregion
43473D2Got1511223617934336179445Ratregion
43474D2Got319622637731126377507Ratregion
43475D2Got18014922672849926728648Ratregion
43477D2Got417022668513726685307Ratregion
43479D2Got519422942916129429355Ratregion
43480D2Got722322986524029865463Ratregion
43481D2Wox3220623199099831991192Ratregion
43483D2Got19511423311776833117872Ratregion
43484D2Got617323223089632231087Ratregion
43485D2Got1014423284403732844191Ratregion
43486D2Got1210823476314034763246Ratregion
43488D2Got18217824312539943125962Ratregion
43488D2Got18217824312578443125962Ratregion
43489D2Got18118924294670342946889Ratregion
43490D2Got2715824445844044458595Ratregion
43491D2Got2819124550883445509022Ratregion
43492D2Wox516024600308546003241Ratregion
43493D2Got3112324600313046003253Ratregion
43495D2Got3027024534852745348797Ratregion
43497D18Got8228825280399952804287Ratregion
43499D18Got8327725629810056298377Ratregion
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5089503AU04919429625417444354174479Ratregion
5090625AU04986515622501881125018969Ratregion
5090691AU04990319624379939343799589Ratregion
5083677BF41805913224469432944694461Ratregion
5083783AI41290013022361336123613491Ratregion
5090415AU04973722723135033831350565Ratregion
5090643AU04987518623368898433689148Ratregion
5084194AA94506720623821623438216442Ratregion
5084652AI00817122023931989539320115Ratregion
5081929BE11877215821413443914134597Ratregion
5084812AI1793779123465265534652747Ratregion
5084858AI10299919921734319017343389Ratregion
5084962AI17180722324410337444103597Ratregion
5087781D13Die2516723152654431526711Ratregion
5087781D13Die2516723157535631575523Ratregion
5088011UniSTS:14392820523082682230827027Ratregion
5082203BI27412420323950042339500626Ratregion
5082429BE11937216822664491926645087Ratregion
5085487BE09695915123425007434250224Ratregion
5090745AU04993813523374020033740321Ratregion
5090809AU04997619225328865253288845Ratregion
5080994RH14190219825072747750727675Ratregion
5081030RH14192418021585103015851210Ratregion
5085286AI59920615022625424126254391Ratregion
5090323AU04968320325639939156399448Ratregion
5081152RH14199518822317416623174354Ratregion
5081316RH14209018822409950524099693Ratregion
5085659BF4165949725323769953237796Ratregion
5089979AU04947718124333968943339874Ratregion
5090073AU04953421522029008820290298Ratregion
5088947AU04886315624848086948481025Ratregion
5082633BE11988616822469530324695471Ratregion
5085960AI01400616022690554826905708Ratregion
5080724RH14174518623110601131106197Ratregion
5084592AI17040418424652067946520863Ratregion
5086357AA89158519022962325629623447Ratregion
5086357AA89158519022962325629623447Ratregion
5081124RH14197820523613405936134264Ratregion
5083147BF39087815623669596636696122Ratregion
5083171BF39091816123613634036136501Ratregion
5081643BE11782420025150608551506285Ratregion
5085258AW53275016724152864441528811Ratregion
5081747BE11801116622840440628404572Ratregion
5081999BG37253615122782516927825320Ratregion
5082001BG37254013822311880323118941Ratregion
5085792BM39231216523562236335622528Ratregion
5085840BF38818520323161236231612565Ratregion
5085842BM38290715223513501335135165Ratregion
5083881AI01065111623953379139533907Ratregion
5507507ECD0947662024331578443316404Ratregion
5507547G1064723721413209514132332Ratregion
5503877CRTL124622068537720685623Ratregion
5507641Ddx4165924424700444248663Ratregion
5507666Ghr10025255176852552167Ratregion
5504304D10S1272E19724433872444338921Ratregion
5505500D1S284289825242276052423658Ratregion
5504444PMC208779P159024424700444247594Ratregion
5505271Hmgcr022799872027999556Ratregion
5505654UniSTS:488481155824192783441929393Ratregion
5505901UniSTS:4960186322402114124021204Ratregion
5506054UniSTS:49824518622358223623582422Ratregion
5506254G35939126721564274915644016Ratregion
5506915G4794025523940154439401799Ratregion
5506467G1600124225080192750802169Ratregion
5506505D16S506135322507075225072105Ratregion
5506674REN2846526124331604643316307Ratregion
5506676REN2847124124331486143315102Ratregion
5506853G4646529623385878333859079Ratregion
5506670REN2800522824341375043413978Ratregion
5506672REN2835725424334939943349653Ratregion
5507223UniSTS:22534416525075831750758482Ratregion
5499575D4Ertd639e22223191410731914953Ratregion
5500133UniSTS:23708520122843871328438914Ratregion
5500135UniSTS:23709011523020778930207904Ratregion
5500139UniSTS:23711320824884081848841026Ratregion
5499715UniSTS:23416522921169008511690314Ratregion
5501229PMC156147P911022687191526872025Ratregion
5500129UniSTS:23706221521194269711942912Ratregion
5500143UniSTS:23709610723177018231770289Ratregion
5500787stSG625181136024331485943316219Ratregion
5500789stSG625182108124331379843314879Ratregion
5500791stSG625183113824331268043313818Ratregion
5500318GDB:187013120023094744130948641Ratregion
5500903RP_L37_191225421647554217387Ratregion
5500957MARC_9941-9942:996688685:2024332104643321420Ratregion
5500615RH136262022844753228447820Ratregion
5503534HCN1__670186124989887449899735Ratregion
5501518G0732917123492697034927141Ratregion
5504922Isl16824807971648079784Ratregion
5501620REN122C19023816007038161096Ratregion
5501844MARC_15693-15694:1017691889:161923533042335331042Ratregion
5506183UniSTS:49873717523191404631914401Ratregion
5506210Mbd333822550152725501865Ratregion
5506678REN2860924024328803243288272Ratregion
5502760THBS4022399420923994558Ratregion
5502799MIER322524331238443312609Ratregion
5502873Foxd185122970400729704858Ratregion
5502293RH12430311224308942843089540Ratregion
Position Markers

Peak: (D2Rat116)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2234,091,039 - 34,091,161 (+)MAPPER
Rnor_6.0233,055,215 - 33,055,336NCBI
Rnor_5.0252,191,413 - 52,191,534UniSTS
RGSC_v3.4233,845,499 - 33,845,620UniSTS
RGSC_v3.4233,845,498 - 33,845,620RGD
RGSC_v3.1233,765,868 - 33,765,989RGD
Celera230,074,386 - 30,074,507UniSTS
RH 3.4 Map2133.7RGD
RH 3.4 Map2133.7UniSTS
RH 2.0 Map2205.7RGD
SHRSP x BN Map212.7498RGD
FHH x ACI Map221.9699RGD
Cytogenetic Map2q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777212654247Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
731179Mamtr3Mammary tumor resistance QTL 30.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)23237377043665178Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
12879863Bp402Blood pressure QTL 4020.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24112578956532139Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24280460760653831Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1354592Rf50Renal function QTL 503.5urine output (VT:0003620)timed urine volume (CMO:0000260)25382274774786777Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)25653191259324719Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general software used: Map Maker QTXb20 10755346
qtl_general number of animals used: 149 F2 animals 10755346
qtl_general measurement method: Dorsal and ventral sides were photographed and pigmented and non-pigmented areas traced manually; percentage of pigmented area calculated (pigmented area/total area X 100) for dorsal, ventral and total body surface 10755346