CCL28 (C-C motif chemokine ligand 28) - Rat Genome Database

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Gene: CCL28 (C-C motif chemokine ligand 28) Pan paniscus
Analyze
Symbol: CCL28
Name: C-C motif chemokine ligand 28
RGD ID: 11909148
Description: ENCODES a protein that exhibits chemokine activity (inferred); cytokine activity (inferred); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); killing of cells of another organism (ortholog); positive regulation of cytosolic calcium ion concentration (ortholog); ASSOCIATED WITH asthma (ortholog); atopic dermatitis (ortholog); bronchial disease (ortholog); FOUND IN secretory granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-C motif chemokine 28
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2466,938,933 - 66,952,819 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1565,092,559 - 65,106,433 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0566,977,643 - 66,998,420 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1572,012,579 - 72,046,074 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl572,012,579 - 72,046,031 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CCL28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2466,938,933 - 66,952,819 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1565,092,559 - 65,106,433 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0566,977,643 - 66,998,420 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1572,012,579 - 72,046,074 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl572,012,579 - 72,046,031 (+)Ensemblpanpan1.1panPan2
CCL28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38543,356,975 - 43,412,391 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl543,376,645 - 43,412,391 (-)EnsemblGRCh38hg38GRCh38
GRCh37543,376,747 - 43,412,493 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36543,417,357 - 43,448,245 (-)NCBINCBI36Build 36hg18NCBI36
Build 34543,412,504 - 43,448,229NCBI
Celera543,272,718 - 43,303,607 (-)NCBICelera
Cytogenetic Map5p12NCBI
HuRef543,332,397 - 43,363,621 (-)NCBIHuRef
CHM1_1543,382,924 - 43,413,832 (-)NCBICHM1_1
T2T-CHM13v2.0543,609,806 - 43,665,221 (-)NCBIT2T-CHM13v2.0
Ccl28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913120,085,355 - 120,115,895 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13120,085,355 - 120,115,895 (+)EnsemblGRCm39 Ensembl
GRCm3813119,623,819 - 119,654,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13119,623,819 - 119,654,359 (+)EnsemblGRCm38mm10GRCm38
Celera13124,002,981 - 124,040,196 (+)NCBICelera
Cytogenetic Map13D2.3NCBI
Ccl28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8253,334,071 - 53,358,709 (+)NCBIGRCr8
mRatBN7.2251,601,354 - 51,625,999 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl251,601,331 - 51,625,997 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx258,720,298 - 58,745,016 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0256,779,014 - 56,803,736 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0251,713,145 - 51,737,860 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0252,379,341 - 52,403,979 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl252,379,341 - 52,404,246 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0270,743,251 - 70,767,888 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4251,688,294 - 51,712,931 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1251,616,526 - 51,641,162 (+)NCBI
Celera247,256,317 - 47,280,946 (+)NCBICelera
Cytogenetic Map2q15NCBI
Ccl28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544618,902,636 - 18,925,561 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544618,902,465 - 18,925,178 (+)NCBIChiLan1.0ChiLan1.0
CCL28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1466,567,139 - 66,597,310 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl466,566,989 - 66,597,459 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha466,327,898 - 66,358,117 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0467,059,634 - 67,089,860 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl467,058,916 - 67,090,314 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1466,817,571 - 66,848,315 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0466,947,140 - 66,977,927 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0467,484,045 - 67,514,790 (+)NCBIUU_Cfam_GSD_1.0
Ccl28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213209,873,838 - 209,888,593 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648018,810,406 - 18,824,894 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648018,819,012 - 18,824,981 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCL28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1627,985,167 - 28,010,858 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11627,990,024 - 28,010,859 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21629,377,476 - 29,399,143 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCL28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1442,163,094 - 42,194,517 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607132,639,127 - 32,653,708 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccl28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475911,759,048 - 11,784,493 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475911,759,304 - 11,781,284 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000063013   ⟹   ENSPPAP00000040100
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl572,012,579 - 72,043,979 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000063017   ⟹   ENSPPAP00000040104
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl572,027,728 - 72,046,031 (+)Ensembl
RefSeq Acc Id: XM_034960121   ⟹   XP_034816012
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2466,938,941 - 66,945,535 (+)NCBI
NHGRI_mPanPan1565,092,567 - 65,099,161 (+)NCBI
Mhudiblu_PPA_v0566,978,014 - 66,993,394 (+)NCBI
RefSeq Acc Id: XM_055112398   ⟹   XP_054968373
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2466,938,933 - 66,952,817 (+)NCBI
NHGRI_mPanPan1565,092,559 - 65,106,433 (+)NCBI
RefSeq Acc Id: XR_004671567
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2466,938,933 - 66,952,819 (+)NCBI
NHGRI_mPanPan1565,092,559 - 65,104,213 (+)NCBI
Mhudiblu_PPA_v0566,978,014 - 66,998,420 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034816012 (Get FASTA)   NCBI Sequence Viewer  
  XP_054968373 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000040100.1
  ENSPPAP00000040104.1
Reference Protein Sequences
RefSeq Acc Id: XP_034816012   ⟸   XM_034960121
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000040104   ⟸   ENSPPAT00000063017
RefSeq Acc Id: ENSPPAP00000040100   ⟸   ENSPPAT00000063013
RefSeq Acc Id: XP_054968373   ⟸   XM_055112398
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CDY6 (UniProtKB/TrEMBL)
Protein Domains
Chemokine interleukin-8-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042711 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000063013.1 UniProtKB/TrEMBL
  ENSPPAT00000063017.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chemokine_CC_CS UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
KEGG Report pps:100987853 UniProtKB/TrEMBL
NCBI Gene CCL28 ENTREZGENE
Pfam IL8 UniProtKB/TrEMBL
PROSITE SMALL_CYTOKINES_CC UniProtKB/TrEMBL
Superfamily-SCOP SSF54117 UniProtKB/TrEMBL
UniProt A0A2R9CDT1_PANPA UniProtKB/TrEMBL
  A0A2R9CDY6 ENTREZGENE, UniProtKB/TrEMBL