RH133854 Marker Search Result - Rat Genome Database

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Marker: RH133854

Symbol: RH133854
Previously known as: AA819660; 
RGD ID: 5050086
Expected Size: 215 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2225,501,655 - 25,501,870 (+)MAPPERmRatBN7.2
mRatBN7.279,319,922 - 9,320,137 (+)MAPPERmRatBN7.2
Rnor_6.0223,926,112 - 23,926,326NCBIRnor6.0
Rnor_6.0712,186,008 - 12,186,222NCBIRnor6.0
Rnor_5.0712,356,063 - 12,356,277UniSTSRnor5.0
Rnor_5.0243,097,155 - 43,097,369UniSTSRnor5.0
RGSC_v3.4224,571,853 - 24,572,067UniSTSRGSC3.4
RGSC_v3.4710,831,220 - 10,831,434UniSTSRGSC3.4
Celera77,498,625 - 7,498,839UniSTS
Celera221,573,679 - 21,573,893UniSTS
Cytogenetic Map7q11UniSTS
Cytogenetic Map2q12UniSTS
Is Marker For: Genes:   Scamp1   Mbd3  




#
Reference Title
Reference Citation
1. UniSTS Pipeline RGD automated pipelines


 
Forward Primer GAAAGTGACTTCCTGGTTGGCT
Reverse Primer TCCCTGCTTCCTTACCATAGGA
 


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
3625Scamp1secretory carrier membrane protein 122543395825516734Rat
1307389Mbd3methyl-CpG binding domain protein 3793129619320166Rat



1 to 10 of 63 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22238462767384627Rat
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat

1 to 10 of 63 rows


Database
Acc Id
Source(s)
NCBI Gene 29521 UniSTS
  362834 UniSTS