Bw19 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bw19 (Body weight QTL 19) Rattus norvegicus

Symbol: Bw19
Name: Body weight QTL 19
RGD ID: 61410
Previously known as: Body weight QTL 1
Trait: body mass   (VT:0001259)    
Measurement Type: body weight   (CMO:0000012)    
LOD Score: 6.2
P Value: 0.001
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr871,669,658 - 46,669,658RGD_MAPPER_PIPELINE
mRatBN7.271 - 44,782,185RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.075,911,477 - 50,911,477RGD_MAPPER_PIPELINERnor6.0
Rnor_5.076,027,519 - 51,027,519RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.472,030,948 - 47,030,948RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.172,051,218 - 47,051,218RGD
Cross Type: F2
Strains Crossed: GK/KyoSwe F344/NRrrc 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Igf1 is a candidate Gene for Bw19


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw19RatBody Weight Changes  IDA 61082 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw19Ratincreased body weight  IDA 61082 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw19Ratbody weight  IDA 61082 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw19Ratcontrol condition  IDA 61082 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw19Ratbody weighing method  IDA 61082 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw19RatF344/NRrrc  IEA 61082 RGD 
Bw19RatGK/KyoSwe  IEA 61082 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw19Ratbody mass  IDA 61082 RGD 


#
Reference Title
Reference Citation
1. Genetic analysis of non-insulin dependent diabetes mellitus in the GK rat Galli J, etal., Nat Genet 1996 Jan;12(1):31-7

Related QTL Description Reference
Bw17 maps to same region RGD:61082



1 to 20 of 927 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1562465RGD1562465similar to GTPase activating protein testicular GAP174030066296Rat
11474771Ralbp1l4ralA binding protein 1 like 4770146178139Rat
7604654LOC102556486thioredoxin-like protein 4A-like7109758110413Rat
7690161Naa11-ps13N(alpha)-acetyltransferase 11, NatA catalytic subunit, pseudogene 137110045110929Rat
7692210LOC102546625uncharacterized LOC1025466257117179155060Rat
2320346Rps19-ps2ribosomal protein S19, pseudogene 27237890238385Rat
41128918LOC120093523partner of Y14 and mago-like7318237324601Rat
9238983LOC103692755polycomb group RING finger protein 2-like7355251356246Rat
1593829Zfp36l2-ps1zinc finger protein 36, C3H type-like 2, pseudogene 17367498370106Rat
7681428LOC102555838uncharacterized LOC1025558387373479385755Rat
708343Hsd17b6hydroxysteroid (17-beta) dehydrogenase 67422466442008Rat
621380Prim1DNA primase subunit 17446342462526Rat
1308642Nacanascent polypeptide associated complex subunit alpha7468862481992Rat
1561913Ptges3prostaglandin E synthase 37490698507759Rat
41276916LOC120093524uncharacterized LOC1200935247511245515134Rat
621368Atp5f1bATP synthase F1 subunit beta7515454521858Rat
41357914Snord59asmall nucleolar RNA, C/D box 59A7516291516366Rat
41355181LOC120093948small nucleolar RNA SNORD597517080517151Rat
1305037Baz2abromodomain adjacent to zinc finger domain, 2A7523204560911Rat
1304813Rbms2RNA binding motif, single stranded interacting protein 27560787603881Rat

1 to 20 of 927 rows
1 to 20 of 762 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10764D7Mit2319772228208722282284Ratregion
33915D14Mit1424671602213316022370Ratregion
33915D14Mit1424671711623617116475Ratregion
34039D3Mit111307924573924703Ratregion
34051D7Mit2823272673740126737633Ratregion
34055D7Mit2214273320007033200212Ratregion
34078D7Mgh1414972250569522505844Ratregion
34164D7Mgh11137711564461156583Ratregion
34166D7Mgh1513871903280719032945Ratregion
33664D7Mit726873131025731310525Ratregion
33721D7Mit179571150021211500307Ratregion
36141D7Rat4916072226618522266345Ratregion
36263D7Rat2916673085810830858274Ratregion
37256D7Rat10614774391053643910683Ratregion
37258D7Rat10723274442107944421311Ratregion
37262D7Rat64157798664679866624Ratregion
37270D7Rat7624073106006631060306Ratregion
37370D13Rat7920472882132728821522Ratregion
37382D7Rat113137794622469462383Ratregion
35178D7Rat4717472522328925223463Ratregion
1 to 20 of 762 rows

Peak: (D7Mit23)
Rat AssemblyChrPosition (strand)Source
GRCr8724,169,560 - 24,169,757 (+)Marker Load Pipeline
mRatBN7.2722,282,087 - 22,282,284 (+)MAPPER
Rnor_6.0728,411,379 - 28,411,575NCBI
Rnor_5.0728,527,421 - 28,527,617UniSTS
RGSC_v3.4724,530,850 - 24,531,046UniSTS
RGSC_v3.1724,551,120 - 24,551,317RGD
Celera719,452,394 - 19,452,590UniSTS
RH 3.4 Map7118.5UniSTS
RH 3.4 Map7118.5RGD
RH 3.4 Map7119.7UniSTS
RH 2.0 Map7122.9RGD
Cytogenetic Map7q12-q13UniSTS


1 to 10 of 49 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat

1 to 10 of 49 rows


Database
Acc Id
Source(s)
NCBI Gene Bw19


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-08 Bw19  Body weight QTL 19  Weight1  Body weight QTL 1  Symbol and Name updated 1299863 APPROVED

Note Type Note Reference