Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Rps28 | Rat | Weight Gain | | ISO | RPS28 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:19030233 | |
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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Rps28 | Rat | Weight Gain | | ISO | RPS28 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:19030233 | |
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# | Reference Title | Reference Citation |
1. | Structures of the human and Drosophila 80S ribosome. | Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104. |
2. | The primary structure of rat ribosomal protein S28. | Chan YL, etal., Biochem Biophys Res Commun 1991 Aug 30;179(1):314-8. |
3. | The isolation of eukaryotic ribosomal proteins. The purification and characterization of the 40 S ribosomal subunit proteins S2, S3, S4, S5, S6, S7, S8, S9, S13, S23/S24, S27, and S28. | Collatz E, etal., J Biol Chem. 1976 Aug 10;251(15):4666-72. |
4. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
5. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
6. | Landscape of the hnRNP K protein-protein interactome. | Mikula M, etal., Proteomics. 2006 Apr;6(8):2395-406. |
7. | Electronic Transfer of LocusLink and RefSeq Data | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
8. | Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. | O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117. |
9. | GOA pipeline | RGD automated data pipeline |
10. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
11. | Comprehensive gene review and curation | RGD comprehensive gene curation |
PMID:8706699 | PMID:15632090 | PMID:15883184 | PMID:18697920 | PMID:20458337 | PMID:22658674 | PMID:22681889 | PMID:23376485 | PMID:24930395 | PMID:24942156 | PMID:25957688 | PMID:35352799 |
Rps28 (Rattus norvegicus - Norway rat) |
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RPS28 (Homo sapiens - human) |
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Rps28 (Mus musculus - house mouse) |
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Rps28 (Chinchilla lanigera - long-tailed chinchilla) |
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RPS28 (Pan paniscus - bonobo/pygmy chimpanzee) |
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RPS28 (Canis lupus familiaris - dog) |
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Rps28 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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RPS28 (Sus scrofa - pig) |
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RPS28 (Chlorocebus sabaeus - green monkey) |
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Rps28 (Heterocephalus glaber - naked mole-rat) |
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Variants in Rps28
2 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH129344 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | 2 | 3 | 2 | ||||||||||
Medium | 1 | 43 | 57 | 41 | 16 | 41 | 8 | 11 | 74 | 35 | 39 | 11 | 8 |
Low | |||||||||||||
Below cutoff |
RefSeq Transcripts | NM_001105730 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | CH474088 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
FQ209805 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ210027 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ210333 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ211223 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ216894 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ217403 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ217999 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ218052 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ218290 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ221340 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ221403 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ221642 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ221735 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222008 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222172 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222320 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222499 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222594 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222598 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222664 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222883 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222945 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ223070 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ223149 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ223680 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ223841 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ224357 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ228386 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ228826 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ228989 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ229005 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ229601 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000007 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000025380 ⟹ ENSRNOP00000088092 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000068323 ⟹ ENSRNOP00000060568 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000114114 ⟹ ENSRNOP00000078298 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001105730 ⟹ NP_001099200 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001099200 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | EDL86618 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000039276.4 | ||
ENSRNOP00000060568.1 | |||
ENSRNOP00000078298.1 | |||
ENSRNOP00000088092.1 | |||
ENSRNOP00055010810 | |||
ENSRNOP00055010812 | |||
ENSRNOP00055045743 | |||
ENSRNOP00060014900 | |||
ENSRNOP00060014908 | |||
ENSRNOP00060040097 | |||
ENSRNOP00065002670 | |||
ENSRNOP00065002672 | |||
ENSRNOP00065028878 | |||
GenBank Protein | P62859 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001099200 ⟸ NM_001105730 |
- UniProtKB: | P62859 (UniProtKB/Swiss-Prot), A6KQI3 (UniProtKB/TrEMBL), A0A0A0MY14 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000060568 ⟸ ENSRNOT00000068323 |
Ensembl Acc Id: | ENSRNOP00000078298 ⟸ ENSRNOT00000114114 |
Ensembl Acc Id: | ENSRNOP00000088092 ⟸ ENSRNOT00000025380 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-P62859-F1-model_v2 | AlphaFold | P62859 | 1-69 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13695088 | ||||||||
Promoter ID: | EPDNEW_R5612 | ||||||||
Type: | single initiation site | ||||||||
Name: | Rps28_1 | ||||||||
Description: | ribosomal protein S28 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:621046 | AgrOrtholog |
BioCyc Gene | G2FUF-34707 | BioCyc |
Ensembl Genes | ENSRNOG00000042886 | Ensembl, UniProtKB/Swiss-Prot |
ENSRNOG00000046342 | UniProtKB/TrEMBL | |
ENSRNOG00000049442 | Ensembl, UniProtKB/Swiss-Prot | |
ENSRNOG00055008003 | UniProtKB/Swiss-Prot | |
ENSRNOG00055032044 | UniProtKB/Swiss-Prot | |
ENSRNOG00060011286 | UniProtKB/Swiss-Prot | |
ENSRNOG00060027773 | UniProtKB/Swiss-Prot | |
ENSRNOG00065002785 | UniProtKB/Swiss-Prot | |
ENSRNOG00065021073 | UniProtKB/Swiss-Prot | |
Ensembl Transcript | ENSRNOT00000025380.7 | UniProtKB/Swiss-Prot |
ENSRNOT00000045955.5 | UniProtKB/TrEMBL | |
ENSRNOT00000068323.2 | UniProtKB/Swiss-Prot | |
ENSRNOT00000114114.1 | UniProtKB/Swiss-Prot | |
ENSRNOT00055013489 | UniProtKB/Swiss-Prot | |
ENSRNOT00055013491 | UniProtKB/Swiss-Prot | |
ENSRNOT00055055420 | UniProtKB/Swiss-Prot | |
ENSRNOT00060019078 | UniProtKB/Swiss-Prot | |
ENSRNOT00060019085 | UniProtKB/Swiss-Prot | |
ENSRNOT00060048181 | UniProtKB/Swiss-Prot | |
ENSRNOT00065003811 | UniProtKB/Swiss-Prot | |
ENSRNOT00065003813 | UniProtKB/Swiss-Prot | |
ENSRNOT00065035817 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 2.40.50.140 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
InterPro | NA-bd_OB-fold | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ribosomal_S28e | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Ribosomal_S28e_CS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:100359503 | UniProtKB/TrEMBL |
rno:691531 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
NCBI Gene | 691531 | ENTREZGENE |
PANTHER | 40S RIBOSOMAL PROTEIN S28 | UniProtKB/Swiss-Prot |
40S RIBOSOMAL PROTEIN S28 | UniProtKB/TrEMBL | |
40S RIBOSOMAL PROTEIN S28 | UniProtKB/TrEMBL | |
PTHR10769 | UniProtKB/Swiss-Prot | |
Pfam | Ribosomal_S28e | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Rps28 | PhenoGen |
PROSITE | RIBOSOMAL_S28E | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000042886 | RatGTEx |
ENSRNOG00000046342 | RatGTEx | |
ENSRNOG00000049442 | RatGTEx | |
ENSRNOG00055008003 | RatGTEx | |
ENSRNOG00055032044 | RatGTEx | |
ENSRNOG00060011286 | RatGTEx | |
ENSRNOG00060027773 | RatGTEx | |
ENSRNOG00065002785 | RatGTEx | |
ENSRNOG00065021073 | RatGTEx | |
Superfamily-SCOP | Nucleic acid-binding proteins | UniProtKB/TrEMBL, UniProtKB/Swiss-Prot |
UniProt | A0A0A0MY14 | ENTREZGENE, UniProtKB/TrEMBL |
A6KQI3 | ENTREZGENE, UniProtKB/TrEMBL | |
P62859 | ENTREZGENE, UniProtKB/Swiss-Prot | |
UniProt Secondary | P25112 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2008-12-01 | Rps28 | ribosomal protein S28 | LOC691531 | similar to 40S ribosomal protein S28 | Data merged from RGD:1582783 | 737654 | APPROVED |
2006-11-19 | LOC691531 | similar to 40S ribosomal protein S28 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2004-02-26 | Rps28 | ribosomal protein S28 | Symbol and Name status set to approved | 625702 | APPROVED | ||
2002-08-07 | Rps28 | ribosomal protein S28 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
Note Type | Note | Reference |
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gene_protein | 69 amino acids and a molecular weight of 7,836 | 634041 |