Rps28 (ribosomal protein S28) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rps28 (ribosomal protein S28) Mus musculus
Analyze
Symbol: Rps28
Name: ribosomal protein S28
RGD ID: 735339
MGI Page MGI
Description: A structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; maturation of SSU-rRNA; and ribosomal small subunit assembly. Part of cytosolic small ribosomal subunit. Is active in synapse. Is expressed in several structures, including cardiovascular system; extraembryonic component; genitourinary system; hemolymphoid system; and vitelline vein. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 15 with mandibulofacial dysostosis. Orthologous to human RPS28 (ribosomal protein S28).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S28; small ribosomal subunit protein eS28
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm10161   Gm10263   Gm10443   Gm12943   Gm13192   Gm15031   Gm16020   Gm3511  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,042,010 - 34,043,536 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,038,001 - 34,043,536 (-)EnsemblGRCm39 Ensembl
GRCm381733,823,036 - 33,824,562 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,819,027 - 33,824,562 (-)EnsemblGRCm38mm10GRCm38
MGSCv371733,959,981 - 33,961,443 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,429,010 - 33,430,453 (-)NCBIMGSCv36mm8
Celera1736,580,449 - 36,581,911 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:6328426   PMID:9507200   PMID:9784405   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15112104   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:16751776   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21529712   PMID:21565611   PMID:21677750   PMID:21873635   PMID:25211037   PMID:25901680   PMID:26206133   PMID:28378742  
PMID:29518331   PMID:30196744   PMID:30550785   PMID:32098917   PMID:32325033   PMID:32434143   PMID:32554809   PMID:35099001   PMID:36114006   PMID:36417873   PMID:36517592  


Genomics

Comparative Map Data
Rps28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,042,010 - 34,043,536 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,038,001 - 34,043,536 (-)EnsemblGRCm39 Ensembl
GRCm381733,823,036 - 33,824,562 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,819,027 - 33,824,562 (-)EnsemblGRCm38mm10GRCm38
MGSCv371733,959,981 - 33,961,443 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,429,010 - 33,430,453 (-)NCBIMGSCv36mm8
Celera1736,580,449 - 36,581,911 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
RPS28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38198,321,496 - 8,323,340 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl198,321,158 - 8,323,340 (+)EnsemblGRCh38hg38GRCh38
GRCh37198,386,380 - 8,388,224 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36198,292,384 - 8,293,280 (+)NCBINCBI36Build 36hg18NCBI36
Build 34198,292,383 - 8,293,278NCBI
Celera198,242,910 - 8,243,806 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef198,040,421 - 8,041,317 (+)NCBIHuRef
CHM1_1198,385,886 - 8,386,782 (+)NCBICHM1_1
T2T-CHM13v2.0198,308,015 - 8,309,851 (+)NCBIT2T-CHM13v2.0
Rps28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8715,309,964 - 15,311,333 (-)NCBIGRCr8
mRatBN7.2714,607,801 - 14,609,170 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1666,797,875 - 66,808,775 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl714,607,801 - 14,609,170 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1672,085,564 - 72,085,888 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0719,481,640 - 19,483,009 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01670,740,007 - 70,740,331 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0718,682,071 - 18,683,440 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl718,682,071 - 18,683,440 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0718,859,671 - 18,861,040 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4716,319,719 - 16,321,088 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1716,319,739 - 16,321,069 (-)NCBI
Celera713,505,200 - 13,506,569 (-)NCBICelera
Cytogenetic Map7q13NCBI
Rps28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,073,774 - 1,074,077 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,073,556 - 1,074,149 (-)NCBIChiLan1.0ChiLan1.0
RPS28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,989,047 - 12,990,012 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11912,105,775 - 12,106,687 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,607,197 - 7,608,113 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1198,458,321 - 8,459,250 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl198,458,321 - 8,459,250 (+)Ensemblpanpan1.1panPan2
RPS28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,901,953 - 52,903,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,902,031 - 52,903,244 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,703,341 - 52,704,584 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02053,429,906 - 53,431,149 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2053,429,936 - 53,431,149 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,632,374 - 52,633,617 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,077,846 - 53,079,089 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02053,309,413 - 53,310,656 (+)NCBIUU_Cfam_GSD_1.0
Rps28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118212,679,261 - 212,680,211 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365885,154,615 - 5,155,522 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365885,154,614 - 5,155,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,953,708 - 70,954,775 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,953,706 - 70,954,862 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,320,395 - 71,321,525 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,684,720 - 7,685,597 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607412,604,390 - 12,605,303 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248281,116,157 - 1,116,686 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248281,116,016 - 1,116,908 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:705
Count of miRNA genes:393
Interacting mature miRNAs:436
Transcripts:ENSMUST00000087342, ENSMUST00000166693, ENSMUST00000173019, ENSMUST00000173480, ENSMUST00000173844, ENSMUST00000173879, ENSMUST00000174788
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
11038694Pas19_mpulmonary adenoma susceptibility 19 (mouse)172971116434754437Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3098790348039703Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173206165237644775Mouse
25394538Skmw84_mskeletal muscle weight 84, TA (mouse)173266042635520036Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173311897454107028Mouse
1302189Dps3_mdelta power in slow-wave sleep 3 (mouse)Not determined173381972136250180Mouse

Markers in Region
AW743880  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381733,822,551 - 33,822,795UniSTSGRCm38
MGSCv371733,959,496 - 33,959,740UniSTSGRCm37
Celera1736,579,964 - 36,580,208UniSTS
Cytogenetic Map17B1UniSTS
cM Map1718.0UniSTS
Whitehead/MRC_RH17487.13UniSTS
Rps28  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B1UniSTS
cM Map17 UniSTS
RH126763  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381733,822,705 - 33,822,911UniSTSGRCm38
MGSCv371733,959,650 - 33,959,856UniSTSGRCm37
Celera1736,580,118 - 36,580,324UniSTS
Cytogenetic Map17B1UniSTS
cM Map1718.0UniSTS
Whitehead/MRC_RH17457.57UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001355384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF110520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF528162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV497904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC090982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY502260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT030732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU405655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU463309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ566373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U11248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000087342   ⟹   ENSMUSP00000110013
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,042,010 - 34,043,536 (-)Ensembl
GRCm38.p6 Ensembl1733,823,036 - 33,824,562 (-)Ensembl
RefSeq Acc Id: ENSMUST00000166693   ⟹   ENSMUSP00000133642
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,042,026 - 34,043,450 (-)Ensembl
GRCm38.p6 Ensembl1733,823,052 - 33,824,476 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173019   ⟹   ENSMUSP00000134615
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,038,001 - 34,043,466 (-)Ensembl
GRCm38.p6 Ensembl1733,819,027 - 33,824,492 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173480
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,042,024 - 34,043,439 (-)Ensembl
GRCm38.p6 Ensembl1733,823,050 - 33,824,465 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173844   ⟹   ENSMUSP00000133357
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,042,024 - 34,043,536 (-)Ensembl
GRCm38.p6 Ensembl1733,823,050 - 33,824,562 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173879   ⟹   ENSMUSP00000134240
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,042,011 - 34,043,320 (-)Ensembl
GRCm38.p6 Ensembl1733,823,037 - 33,824,346 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,042,560 - 34,043,458 (-)Ensembl
GRCm38.p6 Ensembl1733,823,586 - 33,824,484 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234017
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,042,026 - 34,043,468 (-)Ensembl
GRCm38.p6 Ensembl1733,823,052 - 33,824,494 (-)Ensembl
RefSeq Acc Id: NM_001355384   ⟹   NP_001342313
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391734,042,010 - 34,043,536 (-)NCBI
GRCm381733,823,036 - 33,824,562 (-)NCBI
Sequence:
RefSeq Acc Id: NM_016844   ⟹   NP_058540
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391734,042,010 - 34,043,536 (-)NCBI
GRCm381733,823,036 - 33,824,562 (-)NCBI
MGSCv371733,959,981 - 33,961,443 (-)RGD
Celera1736,580,449 - 36,581,911 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_058540   ⟸   NM_016844
- UniProtKB: Q5BKQ7 (UniProtKB/Swiss-Prot),   P62858 (UniProtKB/Swiss-Prot),   Q059I1 (UniProtKB/TrEMBL),   G3UYV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001342313   ⟸   NM_001355384
- UniProtKB: P62858 (UniProtKB/Swiss-Prot),   Q5BKQ7 (UniProtKB/Swiss-Prot),   Q059I1 (UniProtKB/TrEMBL),   G3UYV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000133642   ⟸   ENSMUST00000166693
RefSeq Acc Id: ENSMUSP00000110013   ⟸   ENSMUST00000087342
RefSeq Acc Id: ENSMUSP00000134615   ⟸   ENSMUST00000173019
RefSeq Acc Id: ENSMUSP00000133357   ⟸   ENSMUST00000173844
RefSeq Acc Id: ENSMUSP00000134240   ⟸   ENSMUST00000173879

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62858-F1-model_v2 AlphaFold P62858 1-69 view protein structure

Promoters
RGD ID:13675598
Promoter ID:EPDNEW_M21947
Type:initiation region
Name:Rps28_1
Description:Mus musculus ribosomal protein S28 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381733,824,495 - 33,824,555EPDNEW
RGD ID:6849082
Promoter ID:MM_XEF:3114
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:NM_001023334,   NM_001055614
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361733,959,786 - 33,960,286 (-)MPROMDB
RGD ID:6828634
Promoter ID:MM_KWN:23124
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000048249,   NM_016844,   NM_016844_RPS28
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361733,960,381 - 33,961,617 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1859516 AgrOrtholog
Ensembl Genes ENSMUSG00000067288 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000087342 ENTREZGENE
  ENSMUST00000087342.13 UniProtKB/Swiss-Prot
  ENSMUST00000166693.3 UniProtKB/Swiss-Prot
  ENSMUST00000173019.8 UniProtKB/Swiss-Prot
  ENSMUST00000173844 ENTREZGENE
  ENSMUST00000173844.8 UniProtKB/Swiss-Prot
  ENSMUST00000173879.8 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NA-bd_OB-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S28e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S28e_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54127 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1859516 ENTREZGENE
NCBI Gene 54127 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S28 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S28e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps28 PhenoGen
PROSITE RIBOSOMAL_S28E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G3UYV7 ENTREZGENE, UniProtKB/TrEMBL
  P62858 ENTREZGENE
  Q059I1 ENTREZGENE, UniProtKB/TrEMBL
  Q5BKQ7 ENTREZGENE
  RS28_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P25112 UniProtKB/Swiss-Prot
  Q5BKQ7 UniProtKB/Swiss-Prot