RPS28 (ribosomal protein S28) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: RPS28 (ribosomal protein S28) Sus scrofa
Analyze
Symbol: RPS28
Name: ribosomal protein S28
RGD ID: 14104208
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN cytoplasmic translation (ortholog); ribosomal small subunit biogenesis (ortholog); ribosome biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH autistic disorder (ortholog); Diamond-Blackfan anemia 15 with mandibulofacial dysostosis (ortholog); mucolipidosis type IV (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane; cytosolic small ribosomal subunit; ribosome (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 40S ribosomal protein S28; small ribosomal subunit protein eS28
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,953,708 - 70,954,775 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,953,706 - 70,954,862 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,320,395 - 71,321,525 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:24930395   PMID:30032202  


Genomics

Comparative Map Data
RPS28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,953,708 - 70,954,775 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,953,706 - 70,954,862 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,320,395 - 71,321,525 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38198,321,496 - 8,323,340 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl198,321,158 - 8,323,340 (+)EnsemblGRCh38hg38GRCh38
GRCh37198,386,380 - 8,388,224 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36198,292,384 - 8,293,280 (+)NCBINCBI36Build 36hg18NCBI36
Build 34198,292,383 - 8,293,278NCBI
Celera198,242,910 - 8,243,806 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef198,040,421 - 8,041,317 (+)NCBIHuRef
CHM1_1198,385,886 - 8,386,782 (+)NCBICHM1_1
T2T-CHM13v2.0198,308,015 - 8,309,851 (+)NCBIT2T-CHM13v2.0
Rps28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,042,010 - 34,043,536 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,038,001 - 34,043,536 (-)EnsemblGRCm39 Ensembl
GRCm381733,823,036 - 33,824,562 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,819,027 - 33,824,562 (-)EnsemblGRCm38mm10GRCm38
MGSCv371733,959,981 - 33,961,443 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,429,010 - 33,430,453 (-)NCBIMGSCv36mm8
Celera1736,580,449 - 36,581,911 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Rps28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8715,309,964 - 15,311,333 (-)NCBIGRCr8
mRatBN7.2714,607,801 - 14,609,170 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1666,797,875 - 66,808,775 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl714,607,801 - 14,609,170 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1672,085,564 - 72,085,888 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0719,481,640 - 19,483,009 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01670,740,007 - 70,740,331 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0718,682,071 - 18,683,440 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl718,682,071 - 18,683,440 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0718,859,671 - 18,861,040 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4716,319,719 - 16,321,088 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1716,319,739 - 16,321,069 (-)NCBI
Celera713,505,200 - 13,506,569 (-)NCBICelera
Cytogenetic Map7q13NCBI
Rps28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,073,774 - 1,074,077 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,073,556 - 1,074,149 (-)NCBIChiLan1.0ChiLan1.0
RPS28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,989,047 - 12,990,012 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11912,105,775 - 12,106,687 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,607,197 - 7,608,113 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1198,458,321 - 8,459,250 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl198,458,321 - 8,459,250 (+)Ensemblpanpan1.1panPan2
RPS28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,901,953 - 52,903,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,902,031 - 52,903,244 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,703,341 - 52,704,584 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02053,429,906 - 53,431,149 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2053,429,936 - 53,431,149 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,632,374 - 52,633,617 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,077,846 - 53,079,089 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02053,309,413 - 53,310,656 (+)NCBIUU_Cfam_GSD_1.0
Rps28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118212,679,261 - 212,680,211 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365885,154,615 - 5,155,522 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365885,154,614 - 5,155,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,684,720 - 7,685,597 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607412,604,390 - 12,605,303 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248281,116,157 - 1,116,686 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248281,116,016 - 1,116,908 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPS28
13 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High 8 2 3 5 2 3 3 2
Medium 2 2 20 2 1
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000014851   ⟹   ENSSSCP00000014450
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl270,953,708 - 70,954,775 (-)Ensembl
RefSeq Acc Id: NM_001001587   ⟹   NP_001001587
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1270,953,709 - 70,954,772 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013987364   ⟹   XP_013842818
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1270,953,706 - 70,954,862 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013842818   ⟸   XM_013987364
- Peptide Label: isoform X1
- UniProtKB: Q6QAT1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001001587   ⟸   NM_001001587
- UniProtKB: Q6QAT1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSSSCP00000014450   ⟸   ENSSSCT00000014851


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013597 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00015076105 UniProtKB/Swiss-Prot
  ENSSSCG00025017262 UniProtKB/Swiss-Prot
  ENSSSCG00030018006 UniProtKB/Swiss-Prot
  ENSSSCG00035073015 UniProtKB/Swiss-Prot
  ENSSSCG00040002825 UniProtKB/Swiss-Prot
  ENSSSCG00045030525 UniProtKB/Swiss-Prot
  ENSSSCG00055006878 UniProtKB/Swiss-Prot
  ENSSSCG00060022239 UniProtKB/Swiss-Prot
  ENSSSCG00065040129 UniProtKB/Swiss-Prot
  ENSSSCG00070025313 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014851 ENTREZGENE
  ENSSSCT00000014851.5 UniProtKB/Swiss-Prot
  ENSSSCT00015102681.1 UniProtKB/Swiss-Prot
  ENSSSCT00025023327.1 UniProtKB/Swiss-Prot
  ENSSSCT00030024856.1 UniProtKB/Swiss-Prot
  ENSSSCT00035098887.1 UniProtKB/Swiss-Prot
  ENSSSCT00040003494.1 UniProtKB/Swiss-Prot
  ENSSSCT00045052072.1 UniProtKB/Swiss-Prot
  ENSSSCT00055013312.1 UniProtKB/Swiss-Prot
  ENSSSCT00060030186.1 UniProtKB/Swiss-Prot
  ENSSSCT00065054864.1 UniProtKB/Swiss-Prot
  ENSSSCT00070050597.1 UniProtKB/Swiss-Prot
  ENSSSCT00070050599.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NA-bd_OB-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S28e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S28e_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:414420 UniProtKB/Swiss-Prot
NCBI Gene RPS28 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S28 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S28e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S28E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1VMT5_PIG UniProtKB/TrEMBL
  Q6QAT1 ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID VGNC:100854 ENTREZGENE