RPS28 (ribosomal protein S28) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: RPS28 (ribosomal protein S28) Chlorocebus sabaeus
Analyze
Symbol: RPS28
Name: ribosomal protein S28
RGD ID: 18613055
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN cytoplasmic translation (ortholog); ribosomal small subunit biogenesis (ortholog); ribosome biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH autistic disorder (ortholog); Diamond-Blackfan anemia 15 with mandibulofacial dysostosis (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic small ribosomal subunit (ortholog); ribosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S28
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,684,720 - 7,685,597 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607412,604,390 - 12,605,303 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPS28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,684,720 - 7,685,597 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607412,604,390 - 12,605,303 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RPS28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38198,321,496 - 8,323,340 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl198,321,158 - 8,323,340 (+)EnsemblGRCh38hg38GRCh38
GRCh37198,386,380 - 8,388,224 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36198,292,384 - 8,293,280 (+)NCBINCBI36Build 36hg18NCBI36
Build 34198,292,383 - 8,293,278NCBI
Celera198,242,910 - 8,243,806 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef198,040,421 - 8,041,317 (+)NCBIHuRef
CHM1_1198,385,886 - 8,386,782 (+)NCBICHM1_1
T2T-CHM13v2.0198,308,015 - 8,309,851 (+)NCBIT2T-CHM13v2.0
Rps28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,042,010 - 34,043,536 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,038,001 - 34,043,536 (-)EnsemblGRCm39 Ensembl
GRCm381733,823,036 - 33,824,562 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,819,027 - 33,824,562 (-)EnsemblGRCm38mm10GRCm38
MGSCv371733,959,981 - 33,961,443 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,429,010 - 33,430,453 (-)NCBIMGSCv36mm8
Celera1736,580,449 - 36,581,911 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Rps28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8715,309,964 - 15,311,333 (-)NCBIGRCr8
mRatBN7.2714,607,801 - 14,609,170 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1666,797,875 - 66,808,775 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl714,607,801 - 14,609,170 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1672,085,564 - 72,085,888 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0719,481,640 - 19,483,009 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01670,740,007 - 70,740,331 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0718,682,071 - 18,683,440 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl718,682,071 - 18,683,440 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0718,859,671 - 18,861,040 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4716,319,719 - 16,321,088 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1716,319,739 - 16,321,069 (-)NCBI
Celera713,505,200 - 13,506,569 (-)NCBICelera
Cytogenetic Map7q13NCBI
Rps28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,073,774 - 1,074,077 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,073,556 - 1,074,149 (-)NCBIChiLan1.0ChiLan1.0
RPS28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,989,047 - 12,990,012 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11912,105,775 - 12,106,687 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,607,197 - 7,608,113 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1198,458,321 - 8,459,250 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl198,458,321 - 8,459,250 (+)Ensemblpanpan1.1panPan2
RPS28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,901,953 - 52,903,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,902,031 - 52,903,244 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,703,341 - 52,704,584 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02053,429,906 - 53,431,149 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2053,429,936 - 53,431,149 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,632,374 - 52,633,617 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,077,846 - 53,079,089 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02053,309,413 - 53,310,656 (+)NCBIUU_Cfam_GSD_1.0
Rps28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118212,679,261 - 212,680,211 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365885,154,615 - 5,155,522 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365885,154,614 - 5,155,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,953,708 - 70,954,775 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,953,706 - 70,954,862 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,320,395 - 71,321,525 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Rps28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248281,116,157 - 1,116,686 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248281,116,016 - 1,116,908 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007995117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_007995117   ⟹   XP_007993308
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.167,684,720 - 7,685,597 (+)NCBI
Vero_WHO_p1.0NW_02366607412,604,390 - 12,605,303 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007993308 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017818.1
Reference Protein Sequences
RefSeq Acc Id: XP_007993308   ⟸   XM_007995117
- UniProtKB: A0A0D9SAC9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000174 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018361.1 UniProtKB/TrEMBL
Gene3D-CATH Nucleic acid-binding proteins UniProtKB/TrEMBL
InterPro NA-bd_OB-fold UniProtKB/TrEMBL
  Ribosomal_S28e UniProtKB/TrEMBL
  Ribosomal_S28e_CS UniProtKB/TrEMBL
NCBI Gene RPS28 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S28 UniProtKB/TrEMBL
  40S RIBOSOMAL PROTEIN S28 UniProtKB/TrEMBL
Pfam Ribosomal_S28e UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S28E UniProtKB/TrEMBL
Superfamily-SCOP Nucleic acid-binding proteins UniProtKB/TrEMBL
UniProt A0A0D9SAC9 ENTREZGENE, UniProtKB/TrEMBL