Foco14 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Foco14 (Food consumption QTL 14) Rattus norvegicus

Symbol: Foco14
Name: Food consumption QTL 14
RGD ID: 7411605
Trait: eating behavior trait   (VT:0001431)    
Measurement Type: feed conversion ratio   (CMO:0001312)    
LOD Score: 24.1
P Value: 0.001
Variance: 22.4
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8736,178,764 - 81,178,764RGD_MAPPER_PIPELINE
mRatBN7.2734,293,282 - 79,293,282RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0740,872,682 - 85,872,682RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0741,096,572 - 86,096,572RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4738,076,588 - 83,076,588RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: F344/IcoCrlf LOU/NimrOlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foco14RatBody Weight  IAGP 7401255 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foco14Ratincreased body weight  IDA 7401255 RGD 
Foco14Ratincreased food intake  IDA 7401255 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foco14Ratfeed conversion ratio  IDA 7401255 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foco14Ratcontrol condition  IDA 7401255 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foco14Ratbody weighing method  IDA 7401255 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foco14RatF344/IcoCrlf  IEA 7401255 RGD 
Foco14RatLOU/NimrOlaHsd  IEA 7401255 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foco14Rateating behavior trait  IDA 7401255 RGD 


#
Reference Title
Reference Citation
1. QTLs influencing carbohydrate and fat choice in a LOU/CxFischer 344 F2 rat population. Marissal-Arvy N, etal., Obesity (Silver Spring). 2013 Apr 17. doi: 10.1002/oby.20485.


1 to 20 of 452 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
41291036LOC120093570uncharacterized LOC12009357073430133934326597Rat
1565753Csl1citrate synthase like 173458393234704321Rat
41212204Cs-ps1citrate synthase, pseudogene 173459897834601654Rat
6498798LOC100910453voltage-dependent anion-selective channel protein 1-like73484100034841375Rat
3086KitlgKIT ligand73489607534977215Rat
41175762LOC120093572uncharacterized LOC12009357273498256934988018Rat
11378564LOC108351620glyceraldehyde-3-phosphate dehydrogenase pseudogene73503085535032582Rat
41395832LOC120093971small nucleolar RNA SNORA4873510229035102431Rat
1306351Tmtc3transmembrane O-mannosyltransferase targeting cadherins 373526488635310010Rat
1311640Cep290centrosomal protein 29073531007135399388Rat
41325648Trnap-ggg7transfer RNA proline (anticodon GGG) 773534918335349263Rat
1307947Rlig1RNA 5'-phosphate and 3'-OH ligase 173539687635408633Rat
1563125C7h12orf50similar to human chromosome 12 open reading frame 5073540614735443324Rat
2323562Rps13-ps9ribosomal protein S13, pseudogene 973548047435480916Rat
41251481LOC120093573uncharacterized LOC12009357373655304036571045Rat
1307871Mgat4cMGAT4 family, member C73670956437485810Rat
40962455Rsrc1-ps1arginine and serine rich coiled-coil 1, pseudogene 173706576737071635Rat
6498316LOC100910482uncharacterized LOC10091048273752081437542239Rat
621612Ntsneurotensin73756494437574350Rat
621329Rassf9Ras association domain family member 973759972037631553Rat

1 to 20 of 452 rows
1 to 20 of 596 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
5081240RH14204621373437462534374838Ratregion
5028121D10Mit9614373439778534398230Ratregion
5028121D10Mit9614373439808734398230Ratregion
5066676AU04821613973444609634446235Ratregion
5041014RH12861318273460033734600519Ratregion
44246D7Got2924973465726534657514Ratregion
44245D7Got3025873465726534657523Ratregion
5062598BE10691716573467481334674978Ratregion
5088397AU04854525173478355934783810Ratregion
40812D7Rat8321873480105234801270Ratregion
1628211D7Wox3536673489495934895325Ratregion
5051739RH9463017673489527734895453Ratregion
5501700MGF85273495763834958490Ratregion
5073846RH13767213073497535934975489Ratregion
5057464AA85873915073497684434976994Ratregion
5052805RH14228416073526531835265478Ratregion
5030371BE11200215673526577035265926Ratregion
5032074AU02888617673539407635394253Ratregion
5048050RH13267918073539811435398294Ratregion
61292D7Uwm913973552616135526300Ratregion
1 to 20 of 596 rows

Peak: (D7Rat25)
Rat AssemblyChrPosition (strand)Source
GRCr8758,678,692 - 58,678,836 (+)Marker Load Pipeline
mRatBN7.2756,793,210 - 56,793,354 (+)MAPPER
Rnor_6.0763,372,611 - 63,372,754NCBI
Rnor_5.0763,596,501 - 63,596,644UniSTS
RGSC_v3.4760,576,516 - 60,576,660RGD
RGSC_v3.4760,576,517 - 60,576,660UniSTS
RGSC_v3.1760,597,247 - 60,597,390RGD
Celera753,538,981 - 53,539,124UniSTS
RH 3.4 Map7494.5RGD
RH 3.4 Map7494.5UniSTS
RH 2.0 Map7423.6RGD
SHRSP x BN Map736.71RGD
FHH x ACI Map733.46RGD
Cytogenetic Map7q22UniSTS


1 to 10 of 68 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat

1 to 10 of 68 rows


Note Type Note Reference
qtl_cross_type intercross 7401255
qtl_general measurement method: At 16 weeks of age animals were individually housed and given self-selection diet (protein, carbohydrate and fat diet in three separate cups); percentage of carbohydrate intake calculated as the relative amount of calories provided by carbohydrates against total calories consumed 7401255
qtl_general carbohydrate and fat intake are highly correlated 7401255
qtl_general software package used: multiple interval mapping (MIM); MultiQTL software (version 2.6); ANOVA 7401255
qtl_general number of animals used: 94 F2 females 7401255
qtl_map spans from 51.1-67.0 Mb; peak at 59.1 Mb 7401255