 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations |
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Analyze GeneStrainQTL List |
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Gene Annotator (Annotation Comparison) |
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Gene Ontology AnnotationsDisease AnnotationsGene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Antonenkov VD, etal., Biochem Biophys Res Commun. 2007 May 25;357(1):252-7. Epub 2007 Mar 30. |
| 2. | Asagi K, etal., Nephron. 1998;79(1):80-90. |
| 3. | Critz SD, etal., J Neurochem. 1993 Mar;60(3):1175-8. |
| 4. | Djinovic Carugo K, etal., Acta Crystallogr D Biol Crystallogr. 1999 Mar;55(Pt 3):667-8. |
| 5. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 6. | GOA data from the GO Consortium |
| 7. | Kaneki K, etal., J Vet Med Sci. 2003 Jul;65(7):781-5. |
| 8. | Kanouchi H, etal., Biochim Biophys Acta. 2006 Sep;1760(9):1380-5. Epub 2006 Apr 19. |
| 9. | Kanouchi H, etal., Cell Mol Life Sci. 2000 Jul;57(7):1103-8. |
| 10. | Kanouchi H, etal., Cell Mol Life Sci. 2001 Aug;58(9):1340-3. |
| 11. | Levy-Favatier F, etal., Eur J Biochem 1993 Mar 15;212(3):665-73. |
| 12. | Lighthall GK, etal., J Hypertens. 2004 Aug;22(8):1487-94. |
| 13. | Matsumoto M, etal., Comp Biochem Physiol B Biochem Mol Biol. 2003 Jun;135(2):255-62. |
| 14. | MGD Curation, June 12, 2002 |
| 15. | Morishita R, etal., J Biol Chem. 1999 Jul 16;274(29):20688-92. |
| 16. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 17. | Oka T, etal., J Biol Chem. 1995 Dec 15;270(50):30060-7. |
| 18. | Oxelmark E, etal., Mol Cell Biol. 2000 Oct;20(20):7784-97. |
| 19. | RGD automated data pipeline |
| 20. | RGD automated import pipeline for gene-chemical interactions |
| 21. | Sasagawa T, etal., Biochim Biophys Acta. 1999 Mar 25;1437(3):317-24. |
| 22. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
| 23. | Suzuki K, etal., Biochim Biophys Acta. 2001 Jul 2;1527(1-2):47-53. |
| 24. | Wang H, etal., Chin Med. 2012 Oct 18;7(1):23. doi: 10.1186/1749-8546-7-23. |
References - uncurated| PubMed | 8973653 15489334 16081652 16428853 18614015 19056867 20458337 22094463 22658674 22801372 23376485 30930054 |
Genomics
Comparative Map Data| Rida (Rattus norvegicus - Norway rat) |
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| RIDA (Homo sapiens - human) |
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| Rida (Mus musculus - house mouse) |
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| Rida (Chinchilla lanigera - long-tailed chinchilla) |
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| RIDA (Pan paniscus - bonobo/pygmy chimpanzee) |
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| RIDA (Canis lupus familiaris - dog) |
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| Rida (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| RIDA (Sus scrofa - pig) |
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| RIDA (Chlorocebus sabaeus - African green monkey) |
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| Rida (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | 14 | 14 | 14 | 17 | |||||||||
| Medium | 3 | 16 | 43 | 27 | 19 | 27 | 2 | 2 | 74 | 18 | 41 | 11 | 2 |
| Low | 27 | 6 | 9 | 6 | |||||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_031714 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| GenBank Nucleotide | AAHX01049993 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AC115401 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AF015949 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC078779 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473950 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| D49363 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ209529 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ209945 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ210021 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ210156 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ210226 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ218425 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ218811 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ219440 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ219496 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ231669 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| X70825 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000007430 ⟹ ENSRNOP00000007430 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_031714 ⟹ NP_113902 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
CACGAGGTTGTTACTGCCGTTTCTTCTCTGGAGGATCTTCAAGAGGGAAGGATTAGCATGTCGThide sequence |
Protein Sequences| Protein RefSeqs | NP_113902 | (Get FASTA) | NCBI Sequence Viewer |
| GenBank Protein | AAB70815 | (Get FASTA) | NCBI Sequence Viewer |
| AAH78779 | (Get FASTA) | NCBI Sequence Viewer | |
| BAA08359 | (Get FASTA) | NCBI Sequence Viewer | |
| CAB36976 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM16419 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM16420 | (Get FASTA) | NCBI Sequence Viewer | |
| P52759 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_113902 ⟸ NM_031714 |
| - UniProtKB: | P52759 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MSSIIRKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEANQALKNLGEhide sequence |
| RefSeq Acc Id: | ENSRNOP00000007430 ⟸ ENSRNOT00000007430 |
TranscriptomePromoters| RGD ID: | 13695282 | ||||||||
| Promoter ID: | EPDNEW_R5807 | ||||||||
| Type: | initiation region | ||||||||
| Name: | Rida_1 | ||||||||
| Description: | reactive intermediate imine deaminase A homolog | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:70940 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000005437 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000007430 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Transcript | ENSRNOT00000007430 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Gene3D-CATH | 3.30.1330.40 | UniProtKB/Swiss-Prot |
| IMAGE_CLONE | IMAGE:7128728 | IMAGE-MGC_LOAD |
| InterPro | RidA | UniProtKB/Swiss-Prot |
| RidA_CS | UniProtKB/Swiss-Prot | |
| RutC-like_sf | UniProtKB/Swiss-Prot | |
| YjgF/YER057c/UK114 | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:65151 | UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:93321 | IMAGE-MGC_LOAD |
| NCBI Gene | 65151 | ENTREZGENE |
| PANTHER | PTHR11803 | UniProtKB/Swiss-Prot |
| Pfam | Ribonuc_L-PSP | UniProtKB/Swiss-Prot |
| PhenoGen | Rida | PhenoGen |
| PROSITE | UPF0076 | UniProtKB/Swiss-Prot |
| Superfamily-SCOP | SSF55298 | UniProtKB/Swiss-Prot |
| TIGRFAMs | TIGR00004 | UniProtKB/Swiss-Prot |
| UniGene | Rn.6987 | ENTREZGENE |
| UniProt | P52759 | ENTREZGENE, UniProtKB/Swiss-Prot |
| UniProt Secondary | O35262 | UniProtKB/Swiss-Prot |
| Q9WUV8 | UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2016-01-27 | Rida | reactive intermediate imine deaminase A homolog | Hrsp12 | heat-responsive protein 12 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2002-07-09 | Hrsp12 | heat-responsive protein 12 | Symbol and Name updated to reflect Human and Mouse nomenclature | 70877 | APPROVED |
RGD Curation Notes| Note Type | Note | Reference |
|---|---|---|
| gene_protein | 23 kDa | 70764 |
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| More on Rida | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 70940 |
| Created: | 2002-07-09 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
