Rida (reactive intermediate imine deaminase A homolog) - Rat Genome Database

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Gene: Rida (reactive intermediate imine deaminase A homolog) Rattus norvegicus
Analyze
Symbol: Rida
Name: reactive intermediate imine deaminase A homolog
RGD ID: 70940
Description: Enables several functions, including RNA endonuclease activity, producing 3'-phosphomonoesters; identical protein binding activity; and long-chain fatty acid binding activity. Involved in several processes, including G1 to G0 transition; negative regulation of translation; and response to salt. Located in cytosol; mitochondrial matrix; and peroxisome. Orthologous to human RIDA (reactive intermediate imine deaminase A homolog); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 14.5 kDa translational inhibitor protein; 2-iminobutanoate/2-iminopropanoate deaminase; heat-responsive protein 12; Hrsp12; L-PSP; perchloric acid soluble protein; perchloric acid-soluble protein; Psp; PSP1; ribonuclease UK114; rp14.5; translation inhibitor L-PSP ribonuclease; UK114 antigen homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8767,576,586 - 67,590,493 (-)NCBIGRCr8
mRatBN7.2765,691,429 - 65,705,257 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl765,691,435 - 65,705,716 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx767,580,616 - 67,594,441 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0769,782,349 - 69,796,174 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0769,647,777 - 69,661,588 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0773,256,506 - 73,270,308 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl773,256,508 - 73,270,308 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0773,422,772 - 73,436,372 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4769,930,464 - 69,944,267 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1769,951,193 - 69,964,994 (-)NCBI
Celera762,792,438 - 62,806,237 (-)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amiodarone  (EXP)
ammonium chloride  (EXP)
ampicillin  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
azathioprine  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bexarotene  (EXP)
bezafibrate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bromobenzene  (EXP)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
chloroprene  (ISO)
clofibrate  (EXP)
cobalt dichloride  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
esketamine  (ISO)
ethanol  (EXP,ISO)
flavonoids  (EXP)
flutamide  (EXP)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
glyphosate  (EXP)
isotretinoin  (ISO)
L-ethionine  (EXP)
methapyrilene  (EXP)
metronidazole  (EXP)
monosodium L-glutamate  (ISO)
N-nitrosomorpholine  (EXP)
nefazodone  (EXP)
neomycin  (EXP)
nitrofen  (EXP)
O-methyleugenol  (ISO)
omeprazole  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
Propiverine  (EXP)
resveratrol  (ISO)
rotenone  (EXP)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
sunitinib  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (IBA,IDA)
mitochondrial matrix  (IDA)
mitochondrion  (IBA,IEA)
nucleus  (IEA,ISO)
peroxisome  (IDA,IEA)

References

References - curated
# Reference Title Reference Citation
1. UK114, a YjgF/Yer057p/UK114 family protein highly conserved from bacteria to mammals, is localized in rat liver peroxisomes. Antonenkov VD, etal., Biochem Biophys Res Commun. 2007 May 25;357(1):252-7. Epub 2007 Mar 30.
2. Purification, characterization and differentiation-dependent expression of a perchloric acid soluble protein from rat kidney. Asagi K, etal., Nephron. 1998;79(1):80-90.
3. Stable expression and regulation of a rat brain K+ channel. Critz SD, etal., J Neurochem. 1993 Mar;60(3):1175-8.
4. Crystallization and preliminary X-ray diffraction studies of perchloric acid soluble protein (PSP) from rat liver. Djinovic Carugo K, etal., Acta Crystallogr D Biol Crystallogr. 1999 Mar;55(Pt 3):667-8.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Down regulation of a novel protein, PSP, in rat hepatoma cdRLh 84-beared tumor. Kaneki K, etal., J Vet Med Sci. 2003 Jul;65(7):781-5.
8. Perchloric acid-soluble protein is expressed in enterocytes and goblet cells in the intestine and upregulated by dietary lipid. Kanouchi H, etal., Biochim Biophys Acta. 2006 Sep;1760(9):1380-5. Epub 2006 Apr 19.
9. Expression and cellular distribution of perchloric acid-soluble protein is dependent on the cell-proliferating states of NRK-52E cells. Kanouchi H, etal., Cell Mol Life Sci. 2000 Jul;57(7):1103-8.
10. Recombinant expression of perchloric acid-soluble protein reduces cell proliferation. Kanouchi H, etal., Cell Mol Life Sci. 2001 Aug;58(9):1340-3.
11. Characterization, purification and cDNA cloning of a rat perchloric-acid-soluble 23-kDa protein present only in liver and kidney. Levy-Favatier F, etal., Eur J Biochem 1993 Mar 15;212(3):665-73.
12. Identification of salt-sensitive genes in the kidneys of Dahl rats. Lighthall GK, etal., J Hypertens. 2004 Aug;22(8):1487-94.
13. Purification and characterization of perchloric acid soluble protein from rat lung. Matsumoto M, etal., Comp Biochem Physiol B Biochem Mol Biol. 2003 Jun;135(2):255-62.
14. Gene Data Set MGD Curation, June 12, 2002
15. Ribonuclease activity of rat liver perchloric acid-soluble protein, a potent inhibitor of protein synthesis. Morishita R, etal., J Biol Chem. 1999 Jul 16;274(29):20688-92.
16. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
17. Isolation and characterization of a novel perchloric acid-soluble protein inhibiting cell-free protein synthesis. Oka T, etal., J Biol Chem. 1995 Dec 15;270(50):30060-7.
18. Mmf1p, a novel yeast mitochondrial protein conserved throughout evolution and involved in maintenance of the mitochondrial genome. Oxelmark E, etal., Mol Cell Biol. 2000 Oct;20(20):7784-97.
19. GOA pipeline RGD automated data pipeline
20. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
21. Analysis of the fatty acid components in a perchloric acid-soluble protein. Sasagawa T, etal., Biochim Biophys Acta. 1999 Mar 25;1437(3):317-24.
22. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
23. Purification, characterization and developmental expression of rat brain PSP protein. Suzuki K, etal., Biochim Biophys Acta. 2001 Jul 2;1527(1-2):47-53.
24. Protective effect of Phellinus linteus polysaccharide extracts against thioacetamide-induced liver fibrosis in rats: a proteomics analysis. Wang H, etal., Chin Med. 2012 Oct 18;7(1):23. doi: 10.1186/1749-8546-7-23.
Additional References at PubMed
PMID:8973653   PMID:15489334   PMID:16081652   PMID:16428853   PMID:18614015   PMID:19056867   PMID:20458337   PMID:22094463   PMID:22658674   PMID:22801372   PMID:23376485   PMID:30930054  


Genomics

Comparative Map Data
Rida
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8767,576,586 - 67,590,493 (-)NCBIGRCr8
mRatBN7.2765,691,429 - 65,705,257 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl765,691,435 - 65,705,716 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx767,580,616 - 67,594,441 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0769,782,349 - 69,796,174 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0769,647,777 - 69,661,588 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0773,256,506 - 73,270,308 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl773,256,508 - 73,270,308 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0773,422,772 - 73,436,372 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4769,930,464 - 69,944,267 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1769,951,193 - 69,964,994 (-)NCBI
Celera762,792,438 - 62,806,237 (-)NCBICelera
Cytogenetic Map7q22NCBI
RIDA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38898,102,344 - 98,117,171 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl898,102,344 - 98,117,171 (-)EnsemblGRCh38hg38GRCh38
GRCh37899,114,572 - 99,129,399 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36899,183,743 - 99,198,594 (-)NCBINCBI36Build 36hg18NCBI36
Build 34899,183,742 - 99,198,594NCBI
Celera895,300,431 - 95,315,280 (-)NCBICelera
Cytogenetic Map8q22.2NCBI
HuRef894,318,228 - 94,332,987 (-)NCBIHuRef
CHM1_1899,155,322 - 99,170,170 (-)NCBICHM1_1
T2T-CHM13v2.0899,227,836 - 99,242,661 (-)NCBIT2T-CHM13v2.0
Rida
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391534,484,168 - 34,495,392 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1534,484,167 - 34,495,401 (-)EnsemblGRCm39 Ensembl
GRCm381534,484,022 - 34,495,246 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1534,484,021 - 34,495,255 (-)EnsemblGRCm38mm10GRCm38
MGSCv371534,413,777 - 34,425,001 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361534,428,726 - 34,439,779 (-)NCBIMGSCv36mm8
Celera1535,111,842 - 35,123,094 (-)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1514.34NCBI
Rida
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541713,810,596 - 13,822,982 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541713,810,596 - 13,822,982 (-)NCBIChiLan1.0ChiLan1.0
RIDA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27115,443,968 - 115,458,801 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1890,985,381 - 91,000,244 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0894,739,120 - 94,753,934 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1896,923,776 - 96,938,512 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl896,923,776 - 96,938,512 (-)Ensemblpanpan1.1panPan2
RIDA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.113348,744 - 361,063 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl13348,860 - 361,522 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha13342,375 - 354,474 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.013497,322 - 509,637 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl13497,438 - 509,539 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.113340,907 - 353,035 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.013448,689 - 460,999 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.013454,739 - 467,052 (-)NCBIUU_Cfam_GSD_1.0
Rida
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530337,284,388 - 37,295,076 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647044,710,481 - 44,721,159 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIDA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl438,656,319 - 38,670,987 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1438,656,270 - 38,665,863 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2441,808,015 - 41,817,605 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RIDA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1893,014,986 - 93,031,499 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603947,707,238 - 47,724,168 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rida
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247635,247,715 - 5,263,880 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247635,249,905 - 5,263,994 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rida
85 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:288
Count of miRNA genes:181
Interacting mature miRNAs:213
Transcripts:ENSRNOT00000007430
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF015949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D49363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X70825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000007430   ⟹   ENSRNOP00000007430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl765,691,435 - 65,705,716 (-)Ensembl
Rnor_6.0 Ensembl773,256,508 - 73,270,308 (-)Ensembl
RefSeq Acc Id: NM_031714   ⟹   NP_113902
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8767,576,586 - 67,590,411 (-)NCBI
mRatBN7.2765,691,429 - 65,705,257 (-)NCBI
Rnor_6.0773,256,506 - 73,270,308 (-)NCBI
Rnor_5.0773,422,772 - 73,436,372 (-)NCBI
RGSC_v3.4769,930,464 - 69,944,267 (-)RGD
Celera762,792,438 - 62,806,237 (-)RGD
Sequence:
RefSeq Acc Id: XM_063264217   ⟹   XP_063120287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8767,576,587 - 67,590,493 (-)NCBI
RefSeq Acc Id: NP_113902   ⟸   NM_031714
- UniProtKB: P52759 (UniProtKB/Swiss-Prot),   O35262 (UniProtKB/Swiss-Prot),   Q9WUV8 (UniProtKB/Swiss-Prot),   A6HR02 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007430   ⟸   ENSRNOT00000007430
RefSeq Acc Id: XP_063120287   ⟸   XM_063264217
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q359 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P52759-F1-model_v2 AlphaFold P52759 1-137 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695282
Promoter ID:EPDNEW_R5807
Type:initiation region
Name:Rida_1
Description:reactive intermediate imine deaminase A homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0773,270,324 - 73,270,384EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:70940 AgrOrtholog
BioCyc Gene G2FUF-33680 BioCyc
BioCyc Pathway ILEUSYN-PWY [L-isoleucine biosynthesis I (from threonine)] BioCyc
  PWY-3661 [glycine betaine degradation I] BioCyc
  PWY-4061 [glutathione-mediated detoxification I] BioCyc
  PWY-8001 [felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis] BioCyc
  SERDEG-PWY [L-serine degradation] BioCyc
BioCyc Pathway Image ILEUSYN-PWY BioCyc
  PWY-3661 BioCyc
  PWY-4061 BioCyc
  PWY-8001 BioCyc
  SERDEG-PWY BioCyc
Ensembl Genes ENSRNOG00000005437 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007430.7 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1330.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7128728 IMAGE-MGC_LOAD
InterPro RidA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RidA_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RutC-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  YjgF/YER057c/UK114 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:65151 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93321 IMAGE-MGC_LOAD
NCBI Gene 65151 ENTREZGENE
PANTHER 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11803 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribonuc_L-PSP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rida PhenoGen
PROSITE UPF0076 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005437 RatGTEx
Superfamily-SCOP SSF55298 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2Q359 ENTREZGENE, UniProtKB/TrEMBL
  A6HR02 ENTREZGENE, UniProtKB/TrEMBL
  O35262 ENTREZGENE
  P52759 ENTREZGENE
  Q9WUV8 ENTREZGENE
  RIDA_RAT UniProtKB/Swiss-Prot
UniProt Secondary O35262 UniProtKB/Swiss-Prot
  Q9WUV8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-27 Rida  reactive intermediate imine deaminase A homolog  Hrsp12  heat-responsive protein 12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-07-09 Hrsp12  heat-responsive protein 12      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 23 kDa 70764