Fzd6 (frizzled class receptor 6) - Rat Genome Database

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Gene: Fzd6 (frizzled class receptor 6) Rattus norvegicus
Analyze
Symbol: Fzd6
Name: frizzled class receptor 6
RGD ID: 628816
Description: Predicted to enable Wnt receptor activity; Wnt-protein binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in Wnt signaling pathway; negative regulation of DNA-binding transcription factor activity; and negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within several processes, including cell proliferation in midbrain; embryonic morphogenesis; and establishment of body hair planar orientation. Predicted to be located in several cellular components, including apical plasma membrane; apicolateral plasma membrane; and ciliary basal body. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in nonsyndromic congenital nail disorder 1. Orthologous to human FZD6 (frizzled class receptor 6); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, non-canonical pathway; Wnt signaling, the planar cell polarity pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: frizzled family receptor 6; frizzled homolog 6; frizzled homolog 6 (Drosophila); frizzled-6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8771,939,916 - 71,971,685 (+)NCBIGRCr8
mRatBN7.2770,055,012 - 70,086,781 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl770,055,068 - 70,086,776 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx771,928,131 - 71,959,724 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0774,130,707 - 74,162,300 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0773,998,735 - 74,030,325 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0777,898,329 - 77,931,034 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl777,899,322 - 77,931,029 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0778,317,818 - 78,349,530 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4774,562,307 - 74,594,014 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1774,608,138 - 74,610,532 (+)NCBI
Celera767,111,454 - 67,143,157 (+)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fzd6Ratamenorrhea  ISOFZD6 (Homo sapiens)8554872ClinVar Annotator: match by term: Primary amenorrheaClinVarPMID:21681106
Fzd6RatCohen syndrome  ISOFZD6 (Homo sapiens)8554872ClinVar Annotator: match by term: Cohen syndromeClinVarPMID:28492532
Fzd6Ratgenetic disease  ISOFZD6 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
Fzd6RatHydrops Fetalis  ISOFZD6 (Homo sapiens)8554872ClinVar Annotator: match by term: Non-immune hydrops fetalisClinVarPMID:25741868 and PMID:26036949
Fzd6Ratnail disease  ISOFZD6 (Homo sapiens)8554872ClinVar Annotator: match by term: Nail diseaseClinVarPMID:21665003 and PMID:22211385
Fzd6Ratnephroblastoma  ISOFZD6 (Homo sapiens)8554872ClinVar Annotator: match by term: NephroblastomaClinVarPMID:26822237
Fzd6Ratnonsyndromic congenital nail disorder 1  ISOFZD6 (Homo sapiens)8554872ClinVar Annotator: match by term: Nonsyndromic congenital nail disorder 1ClinVarPMID:21665003 more ...
Object Symbol
Species
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Qualifier
Evidence
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Reference
Notes
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Original Reference(s)
Fzd6Ratnonsyndromic congenital nail disorder 1  ISOFZD6 (Homo sapiens)7240710 OMIM 

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Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Fzd6Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of FZD6 mRNA]CTDPMID:31150632
Fzd6Rat17beta-estradiol increases expressionISOFzd6 (Mus musculus)6480464Estradiol results in increased expression of FZD6 mRNACTDPMID:39298647
Fzd6Rat17beta-hydroxy-5alpha-androstan-3-one decreases expressionISOFzd6 (Mus musculus)6480464Dihydrotestosterone results in decreased expression of FZD6 mRNACTDPMID:17023530
Fzd6Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOFzd6 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of FZD6 mRNACTDPMID:21570461
Fzd6Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of FZD6 mRNACTDPMID:33387578 and PMID:34747641
Fzd6Rat3,3',5,5'-tetrabromobisphenol A decreases expressionISOFzd6 (Mus musculus)6480464tetrabromobisphenol A results in decreased expression of FZD6 mRNACTDPMID:25172293
Fzd6Rat4,4'-diaminodiphenylmethane decreases expressionISOFzd6 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in decreased expression of FZD6 mRNACTDPMID:18648102
Fzd6Rat4,4'-sulfonyldiphenol increases expressionISOFzd6 (Mus musculus)6480464bisphenol S results in increased expression of FZD6 mRNACTDPMID:30951980
Fzd6Rat4,4'-sulfonyldiphenol affects methylationISOFzd6 (Mus musculus)6480464bisphenol S affects the methylation of FZD6 geneCTDPMID:31683443
Fzd6Rat4-hydroxyphenyl retinamide increases expressionISOFzd6 (Mus musculus)6480464Fenretinide results in increased expression of FZD6 mRNACTDPMID:28973697
Fzd6Rataflatoxin B1 affects expressionISOFZD6 (Homo sapiens)6480464Aflatoxin B1 affects the expression of FZD6 proteinCTDPMID:20106945
Fzd6Rataflatoxin B1 increases expressionEXP 6480464Aflatoxin B1 results in increased expression of FZD6 mRNACTDPMID:25378103
Fzd6Rataflatoxin B1 increases expressionISOFZD6 (Homo sapiens)6480464Aflatoxin B1 results in increased expression of FZD6 mRNACTDPMID:27153756
Fzd6Ratall-trans-retinoic acid increases expressionISOFZD6 (Homo sapiens)6480464Tretinoin results in increased expression of FZD6 mRNACTDPMID:21934132
Fzd6Ratall-trans-retinoic acid multiple interactionsISOFzd6 (Mus musculus)6480464[bisphenol F co-treated with Tretinoin] results in decreased expression of FZD6 mRNACTDPMID:30951980
Fzd6Ratamitrole decreases expressionEXP 6480464Amitrole results in decreased expression of FZD6 mRNACTDPMID:38685447
Fzd6Ratammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of FZD6 mRNACTDPMID:16483693
Fzd6Ratantirheumatic drug increases expressionISOFZD6 (Homo sapiens)6480464Antirheumatic Agents results in increased expression of FZD6 mRNACTDPMID:24449571
Fzd6Rataristolochic acid A decreases expressionISOFZD6 (Homo sapiens)6480464aristolochic acid I results in decreased expression of FZD6 mRNACTDPMID:33212167
Fzd6Ratarsenite(3-) increases expressionISOFzd6 (Mus musculus)6480464arsenite results in increased expression of FZD6 mRNACTDPMID:18191166

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Biological Process
1 to 20 of 33 rows

  
Object Symbol
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Original Reference(s)
Fzd6Ratbiological_process  ND 159840707/2010: no relevant rat dataRGD 
Fzd6Ratcanonical Wnt signaling pathway involved_inIBAFB:FBgn0001085 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Fzd6Ratcell proliferation in midbrain acts_upstream_of_or_withinISOFzd6 (Mus musculus)1624291MGI:108476 PMID:19842188RGDPMID:19842188
Fzd6Ratcell proliferation in midbrain acts_upstream_of_or_withinIEAUniProtKB:Q61089 and ensembl:ENSMUSP000001363281600115GO_REF:0000107EnsemblGO_REF:0000107
Fzd6Ratcell surface receptor signaling pathway involved_inIEAInterPro:IPR000539 and InterPro:IPR0179811600115GO_REF:0000002InterProGO_REF:0000002
Fzd6Ratembryonic nail plate morphogenesis acts_upstream_of_or_withinISOFzd6 (Mus musculus)1624291MGI:3050103 PMID:23439395RGDPMID:23439395
Fzd6Ratembryonic nail plate morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q61089 and ensembl:ENSMUSP000001363281600115GO_REF:0000107EnsemblGO_REF:0000107
Fzd6Ratestablishment of body hair planar orientation acts_upstream_of_or_withinIEAUniProtKB:Q61089 and ensembl:ENSMUSP000001363281600115GO_REF:0000107EnsemblGO_REF:0000107
Fzd6Ratestablishment of body hair planar orientation acts_upstream_of_or_withinISOFzd6 (Mus musculus)1624291MGI:1889277 PMID:26418459RGDPMID:26418459
Fzd6Ratestablishment of planar polarity acts_upstream_of_or_withinIEAUniProtKB:Q61089 and ensembl:ENSMUSP000001363281600115GO_REF:0000107EnsemblGO_REF:0000107
Fzd6Ratestablishment of planar polarity acts_upstream_of_or_withinISOFzd6 (Mus musculus)1624291MGI:108476 PMID:16495441RGDPMID:16495441
Fzd6RatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Fzd6Rathair follicle development acts_upstream_of_or_withinIEAUniProtKB:Q61089 and ensembl:ENSMUSP000001363281600115GO_REF:0000107EnsemblGO_REF:0000107
Fzd6Rathair follicle development acts_upstream_of_or_withinISOFzd6 (Mus musculus)1624291MGI:3050103 more ...RGDPMID:15169958 and PMID:17172440
Fzd6Ratinner ear morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q61089 and ensembl:ENSMUSP000001363281600115GO_REF:0000107EnsemblGO_REF:0000107
Fzd6Ratinner ear morphogenesis acts_upstream_of_or_withinISOFzd6 (Mus musculus)1624291MGI:108476 PMID:16495441RGDPMID:16495441
Fzd6Ratmidbrain development acts_upstream_of_or_withinISOFzd6 (Mus musculus)1624291MGI:108476 PMID:19842188RGDPMID:19842188
Fzd6Ratmidbrain development acts_upstream_of_or_withinIEAUniProtKB:Q61089 and ensembl:ENSMUSP000001363281600115GO_REF:0000107EnsemblGO_REF:0000107
Fzd6Ratnegative regulation of canonical Wnt signaling pathway involved_inISOFZD6 (Homo sapiens)1624291 PMID:14747478RGDPMID:14747478
Fzd6Ratnegative regulation of canonical Wnt signaling pathway involved_inIEAUniProtKB:O60353 and ensembl:ENSP000003516051600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Reference
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Source
Original Reference(s)
Fzd6Ratapical part of cell located_inIEAUniProtKB:Q61089 and ensembl:ENSMUSP000001363281600115GO_REF:0000107EnsemblGO_REF:0000107
Fzd6Ratapical part of cell located_inISOFzd6 (Mus musculus)1624291 PMID:16495441RGDPMID:16495441
Fzd6Ratapical plasma membrane located_inISOFzd6 (Mus musculus)1624291 PMID:25393619RGDPMID:25393619
Fzd6Ratapical plasma membrane located_inIEAUniProtKB-SubCell:SL-00151600115GO_REF:0000044UniProtGO_REF:0000044
Fzd6Ratapical plasma membrane located_inIEAUniProtKB:Q61089 and ensembl:ENSMUSP000001363281600115GO_REF:0000107EnsemblGO_REF:0000107
Fzd6Ratapicolateral plasma membrane located_inIEAUniProtKB:Q61089 and ensembl:ENSMUSP000001363281600115GO_REF:0000107EnsemblGO_REF:0000107
Fzd6Ratapicolateral plasma membrane located_inISOFzd6 (Mus musculus)1624291 PMID:17376975RGDPMID:17376975
Fzd6Ratcell surface located_inIEAUniProtKB-SubCell:SL-03101600115GO_REF:0000044UniProtGO_REF:0000044
Fzd6Ratciliary basal body located_inISOFZD6 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Fzd6Ratciliary basal body located_inIEAUniProtKB:O60353 and ensembl:ENSP000003516051600115GO_REF:0000107EnsemblGO_REF:0000107
Fzd6Ratcilium located_inISOFZD6 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Fzd6Ratcilium located_inIEAUniProtKB:O60353 and ensembl:ENSP000003516051600115GO_REF:0000107EnsemblGO_REF:0000107
Fzd6Ratcytoplasmic vesicle located_inIEAUniProtKB-KW:KW-09681600115GO_REF:0000043UniProtGO_REF:0000043
Fzd6Ratcytoplasmic vesicle membrane located_inIEAUniProtKB-SubCell:SL-00891600115GO_REF:0000044UniProtGO_REF:0000044
Fzd6Ratendoplasmic reticulum membrane located_inISOFzd6 (Mus musculus)1624291 PMID:31073040RGDPMID:31073040
Fzd6Ratendoplasmic reticulum membrane located_inIEAUniProtKB:Q61089 and ensembl:ENSMUSP000001363281600115GO_REF:0000107EnsemblGO_REF:0000107
Fzd6Ratmembrane located_inIEAInterPro:IPR000539 and InterPro:IPR0179811600115GO_REF:0000002InterProGO_REF:0000002
Fzd6Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Fzd6Ratplasma membrane located_inISOFZD6 (Canis lupus familiaris)1624291 PMID:15265686RGDPMID:15265686
Fzd6Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
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Molecular Function
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RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fzd6RatWnt signaling pathway  ISOFZD6 (Homo sapiens)2301993 RGD 
Fzd6RatWnt signaling, the planar cell polarity pathway   ISOFzd6 (Mus musculus)2293492 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fzd6Ratbasal cell carcinoma pathway  IEA 6907045 KEGGrno:05217
Fzd6RatWnt signaling pathway  IEA 6907045 KEGGrno:04310

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Fzd6RatWnt signaling, non-canonical pathway  ISOFZD6 (Homo sapiens)6484113 PIDPID:200020

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#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. The human Frizzled 6 (HFz6) acts as a negative regulator of the canonical Wnt. beta-catenin signaling cascade. Golan T, etal., J Biol Chem 2004 Apr 9;279(15):14879-88. Epub 2004 Jan 27.
4. Planar cell polarity signaling in vertebrates. Jones C and Chen P, Bioessays. 2007 Feb;29(2):120-32.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. The Wnt Homepage Roel Nusse - Howard Hughes Medical Institute and the Department of Developmental Biology at Stanford University, California, USA
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PMID:10347172   PMID:12399112   PMID:15169958   PMID:15265686   PMID:16495441   PMID:17172440   PMID:17376975   PMID:18606138   PMID:19842188   PMID:19901330   PMID:22575959   PMID:23439395  
PMID:26418459   PMID:31073040   PMID:38710294  



Fzd6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8771,939,916 - 71,971,685 (+)NCBIGRCr8
mRatBN7.2770,055,012 - 70,086,781 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl770,055,068 - 70,086,776 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx771,928,131 - 71,959,724 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0774,130,707 - 74,162,300 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0773,998,735 - 74,030,325 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0777,898,329 - 77,931,034 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl777,899,322 - 77,931,029 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0778,317,818 - 78,349,530 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4774,562,307 - 74,594,014 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1774,608,138 - 74,610,532 (+)NCBI
Celera767,111,454 - 67,143,157 (+)NCBICelera
Cytogenetic Map7q22NCBI
FZD6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388103,298,494 - 103,332,866 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8103,298,433 - 103,332,866 (+)EnsemblGRCh38hg38GRCh38
GRCh378104,310,722 - 104,345,094 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368104,380,276 - 104,414,270 (+)NCBINCBI36Build 36hg18NCBI36
Build 348104,380,275 - 104,414,268NCBI
Celera8100,497,508 - 100,531,944 (+)NCBICelera
Cytogenetic Map8q22.3NCBI
HuRef899,511,909 - 99,546,152 (+)NCBIHuRef
CHM1_18104,351,658 - 104,386,105 (+)NCBICHM1_1
T2T-CHM13v2.08104,426,440 - 104,460,824 (+)NCBIT2T-CHM13v2.0
Fzd6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391538,869,673 - 38,901,587 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1538,869,429 - 38,901,583 (+)EnsemblGRCm39 Ensembl
GRCm381539,006,149 - 39,038,192 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1539,006,034 - 39,038,188 (+)EnsemblGRCm38mm10GRCm38
MGSCv371538,837,826 - 38,869,738 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361538,836,426 - 38,868,266 (+)NCBIMGSCv36mm8
Celera1539,491,330 - 39,523,038 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1515.22NCBI
Fzd6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541727,465,701 - 27,494,790 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541727,465,730 - 27,493,752 (+)NCBIChiLan1.0ChiLan1.0
FZD6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27120,665,197 - 120,699,444 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1896,201,109 - 96,235,336 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0899,954,523 - 99,989,153 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18102,110,317 - 102,144,363 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8102,110,317 - 102,144,363 (+)Ensemblpanpan1.1panPan2
FZD6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1134,732,541 - 4,771,294 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl134,733,017 - 4,772,115 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha134,736,685 - 4,774,802 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0134,896,006 - 4,936,859 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl134,896,040 - 4,936,854 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1134,737,532 - 4,775,876 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0134,855,495 - 4,893,845 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0134,868,139 - 4,906,505 (+)NCBIUU_Cfam_GSD_1.0
Fzd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530332,990,184 - 33,027,935 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647040,416,014 - 40,454,062 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647040,416,254 - 40,454,717 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FZD6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl433,809,809 - 33,844,656 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1433,811,159 - 33,844,556 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2436,662,301 - 36,697,139 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FZD6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1898,154,173 - 98,187,864 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl898,154,196 - 98,188,069 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603942,412,469 - 42,446,650 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fzd6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476319,861,837 - 19,888,626 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Fzd6
208 total Variants


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
7 70083459 70083460 C T snv PVG/Seac (2019) View more Information


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
7 74586742 74586743 C T snv M520/N (KNAW) View more Information


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
7 77923757 77923758 C T snv M520/N (MCW) View more Information
7 77927712 77927713 C T snv PVG/Seac (2019) View more Information

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:149
Interacting mature miRNAs:163
Transcripts:ENSRNOT00000006195
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 36 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat

1 to 10 of 36 rows
RH128010  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2770,086,349 - 70,086,532 (+)MAPPERmRatBN7.2
Rnor_6.0777,930,603 - 77,930,785NCBIRnor6.0
Rnor_5.0778,318,067 - 78,318,249UniSTSRnor5.0
RGSC_v3.4774,593,588 - 74,593,770UniSTSRGSC3.4
Celera767,142,731 - 67,142,913UniSTS
Cytogenetic Map7q22UniSTS
Fzd6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2698,100,874 - 98,100,975 (+)MAPPERmRatBN7.2
Rnor_6.06102,478,321 - 102,478,421NCBIRnor6.0
Rnor_5.06115,164,269 - 115,164,369UniSTSRnor5.0
RGSC_v3.46102,071,084 - 102,071,184UniSTSRGSC3.4
Celera696,485,919 - 96,486,019UniSTS
Cytogenetic Map6q24UniSTS
Cytogenetic Map7q22UniSTS
Fzd6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2770,080,140 - 70,080,340 (+)MAPPERmRatBN7.2
Rnor_6.0777,924,394 - 77,924,593NCBIRnor6.0
Rnor_5.0778,324,259 - 78,324,458UniSTSRnor5.0
RGSC_v3.4774,587,379 - 74,587,578UniSTSRGSC3.4
Celera767,136,522 - 67,136,721UniSTS
Cytogenetic Map7q22UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000006195   ⟹   ENSRNOP00000006195
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl770,055,068 - 70,086,776 (+)Ensembl
Rnor_6.0 Ensembl777,899,322 - 77,931,029 (+)Ensembl
RefSeq Acc Id: NM_001130536   ⟹   NP_001124008
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,939,973 - 71,971,680 (+)NCBI
mRatBN7.2770,055,068 - 70,086,776 (+)NCBI
Rnor_6.0777,899,322 - 77,931,029 (+)NCBI
Rnor_5.0778,317,818 - 78,349,530 (-)NCBI
RGSC_v3.4774,562,307 - 74,594,014 (+)RGD
Celera767,111,454 - 67,143,157 (+)RGD
Sequence:
RefSeq Acc Id: XM_017594684   ⟹   XP_017450173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,939,916 - 71,971,685 (+)NCBI
mRatBN7.2770,055,012 - 70,086,781 (+)NCBI
Rnor_6.0777,898,329 - 77,931,034 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594686   ⟹   XP_017450175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,940,090 - 71,971,685 (+)NCBI
mRatBN7.2770,055,176 - 70,086,781 (+)NCBI
Rnor_6.0777,899,468 - 77,931,034 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039078519   ⟹   XP_038934447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,939,917 - 71,971,685 (+)NCBI
mRatBN7.2770,055,012 - 70,086,781 (+)NCBI
RefSeq Acc Id: XM_039078520   ⟹   XP_038934448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,939,917 - 71,971,685 (+)NCBI
mRatBN7.2770,055,012 - 70,086,781 (+)NCBI
RefSeq Acc Id: XM_063263073   ⟹   XP_063119143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,939,973 - 71,971,685 (+)NCBI
RefSeq Acc Id: XM_063263074   ⟹   XP_063119144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,959,275 - 71,971,685 (+)NCBI
RefSeq Acc Id: XM_063263075   ⟹   XP_063119145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,961,388 - 71,971,685 (+)NCBI
RefSeq Acc Id: XR_005486551
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8771,940,298 - 71,968,425 (+)NCBI
mRatBN7.2770,055,069 - 70,083,521 (+)NCBI
RefSeq Acc Id: NP_001124008   ⟸   NM_001130536
- Peptide Label: precursor
- UniProtKB: G3V6L1 (UniProtKB/TrEMBL),   A6HR66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450173   ⟸   XM_017594684
- Peptide Label: isoform X1
- UniProtKB: G3V6L1 (UniProtKB/TrEMBL),   A6HR66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450175   ⟸   XM_017594686
- Peptide Label: isoform X1
- UniProtKB: G3V6L1 (UniProtKB/TrEMBL),   A6HR66 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006195   ⟸   ENSRNOT00000006195
RefSeq Acc Id: XP_038934447   ⟸   XM_039078519
- Peptide Label: isoform X1
- UniProtKB: G3V6L1 (UniProtKB/TrEMBL),   A6HR66 (UniProtKB/TrEMBL)
Name Modeler Protein Id AA Range Protein Structure
AF-G3V6L1-F1-model_v2 AlphaFold G3V6L1 1-710 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13695304
Promoter ID:EPDNEW_R5829
Type:initiation region
Name:Fzd6_1
Description:frizzled class receptor 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0777,899,251 - 77,899,311EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-33579 BioCyc
Ensembl Genes ENSRNOG00000004660 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006195 ENTREZGENE
  ENSRNOT00000006195.6 UniProtKB/TrEMBL
  ENSRNOT00000125394 ENTREZGENE
Gene3D-CATH 1.10.2000.10 UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro Frizzled UniProtKB/TrEMBL
  Frizzled/SFRP UniProtKB/TrEMBL
  Frizzled_dom UniProtKB/TrEMBL
  Frizzled_dom_sf UniProtKB/TrEMBL
  FZ6_CRD UniProtKB/TrEMBL
  FZD6_TM UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/TrEMBL
KEGG Report rno:282581 UniProtKB/TrEMBL
NCBI Gene 282581 ENTREZGENE
PANTHER PTHR11309 UniProtKB/TrEMBL
  PTHR11309:SF75 UniProtKB/TrEMBL
Pfam Frizzled UniProtKB/TrEMBL
  PF01392 UniProtKB/TrEMBL
PharmGKB FZD6 RGD
PhenoGen Fzd6 PhenoGen
PRINTS FRIZZLED UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
  PS50038 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004660 RatGTEx
SMART FRI UniProtKB/TrEMBL
  Frizzled UniProtKB/TrEMBL
Superfamily-SCOP Frizzled_Cys-rich UniProtKB/TrEMBL
UniProt A6HR66 ENTREZGENE, UniProtKB/TrEMBL
  G3V6L1 ENTREZGENE, UniProtKB/TrEMBL
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-02-06 Fzd6  frizzled class receptor 6  Fzd6  frizzled family receptor 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-02 Fzd6  frizzled family receptor 6  Fzd6  frizzled homolog 6 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Fzd6  frizzled homolog 6 (Drosophila)      Symbol and Name status set to approved 1299863 APPROVED
2003-02-27 Fzd6  frizzled homolog 6 (Drosophila)      Symbol and Name status set to provisional 70820 PROVISIONAL