Bmd29 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bmd29 (Bone mineral density QTL 29) Rattus norvegicus

Symbol: Bmd29
Name: Bone mineral density QTL 29
RGD ID: 2293644
Trait: femur size trait   (VT:1000369)    
Measurement Type: femoral neck cross-sectional area   (CMO:0001697)    
LOD Score: 5.4
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2747,651,439 - 92,651,439RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0755,495,689 - 100,495,689RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0778,253,693 - 123,378,833RGDRnor5.0
RGSC_v3.4774,658,964 - 120,536,775RGDRGSC3.4
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
1. Alam I, etal., J Bone Miner Res. 2008 Feb 18;.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2318888LOC100362094ribosomal protein L27a-like74764285247675130Rat
628829Kcnc2potassium voltage-gated channel subfamily C member 274770003547883979Rat
41098017LOC120093919U6 spliceosomal RNA74817766848177762Rat
2301984Atxn7l3bataxin 7-like 3B74832245148325975Rat
41045788LOC120093996U1 spliceosomal RNA74832846248328620Rat
7709076LOC102546573uncharacterized LOC10254657374841026548417520Rat
6486766LOC100912511tubulin alpha-1C chain-like74856449248565895Rat
41275865LOC120093950small nucleolar RNA SNORD5674872207948722132Rat
11414169LOC108351454uncharacterized LOC10835145474941918049434582Rat
1585306LOC688700similar to ADP-ribosylation factor 174972842149728965Rat
728895Trhdethyrotropin-releasing hormone degrading enzyme74994327150367371Rat
41180745LOC120093589uncharacterized LOC12009358975035015950370342Rat
41120670NEWGENE_6576114transfer RNA threonine (anticodon AGU)75036331750363395Rat
7514887LOC102549403uncharacterized LOC10254940375040092250423295Rat
41208259LOC120093590uncharacterized LOC12009359075043309750440570Rat
1595789LOC366895similar to basic transcription factor 375054446450546990Rat
631332Tph2tryptophan hydroxylase 275068569450789424Rat
9406127LOC103692856nuclear cap-binding protein subunit 2 pseudogene75073889650747463Rat
1307920Tbc1d15TBC1 domain family, member 1575080455350860272Rat
1303150Rab21RAB21, member RAS oncogene family75090405050928890Rat
735209Tmem19transmembrane protein 1975095888751007974Rat
1306287Zfc3h1zinc finger, C3H1-type containing75100825151064666Rat
41089710LOC120093959small nucleolar RNA SNORA4475101910851019230Rat
11410267LOC108351455heterogeneous nuclear ribonucleoprotein A3-like75104580151047650Rat
41346314LOC120093850MICOS complex subunit Mic10-like75107619551079347Rat
1307733Lgr5leucine rich repeat containing G protein coupled receptor 575108705951221882Rat
41214652NEWGENE_40926764transfer RNA proline (anticodon AGG)75110298851103061Rat
41084931LOC12009359139S ribosomal protein L50, mitochondrial-like75119307151213603Rat
621783Tspan8tetraspanin 875144494651479360Rat
41113964LOC120093938U7 small nuclear RNA75147428051474337Rat
7677619LOC102551386uncharacterized LOC10255138675149007851494499Rat
7638646LOC102551482uncharacterized LOC10255148275150810351519060Rat
41120201LOC120093592uncharacterized LOC12009359275152912251541332Rat
620780Ptprrprotein tyrosine phosphatase, receptor type, R75166259551929605Rat
1596425Taf7l-ps1TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 175176325951764401Rat
41355956LOC120093594uncharacterized LOC12009359475186252251881220Rat
41067918LOC120093595uncharacterized LOC12009359575189986351919776Rat
41320150LOC120093593uncharacterized LOC12009359375192974651943054Rat
1305922Ptprbprotein tyrosine phosphatase, receptor type, B75195337552034751Rat
620728Kcnmb4potassium calcium-activated channel subfamily M regulatory beta subunit 475206614552119098Rat
1311672Cnot2CCR4-NOT transcription complex, subunit 275213044452222338Rat
2318367LOC100362318protein disulfide-isomerase A4-like75224120052242264Rat
40972102LOC120093596uncharacterized LOC12009359675231948552323305Rat
1564883RGD1564883similar to 60S ribosomal protein L1275236672652367448Rat
1562127Myrflmyelin regulatory factor-like75240332452519907Rat
1582946LOC688961similar to H3 histone, family 3B75252344852526265Rat
620650Rab3ipRAB3A interacting protein75253146152575295Rat
41062939LOC120093597forkhead box protein D1-like75257457452580147Rat
1305439Best3bestrophin 375258682452656776Rat
41120395LOC120093598uncharacterized LOC12009359875263629252640179Rat
1597472LOC689014similar to CG9987-PA75266985552671671Rat
41354498LOC120093599uncharacterized LOC12009359975267695752685404Rat
1307358Lrrc10leucine-rich repeat-containing 1075268697252688369Rat
1359143Cct2chaperonin containing TCP1 subunit 275269272552705478Rat
1308201Frs2fibroblast growth factor receptor substrate 275271125552792758Rat
41286435LOC120093600uncharacterized LOC12009360075279287152805208Rat
1597418LOC689068similar to mitochondrial ribosomal protein L4775284067952841539Rat
1305741Yeats4YEATS domain containing 475285831352865454Rat
1306474RGD1306474similar to RIKEN cDNA 9530003J2375287584252880716Rat
1593616Lyc2lysozyme C type 275288688352894447Rat
3026Lyz2lysozyme 275290681052912154Rat
41016237LOC120093975small nucleolar RNA SNORA4875293013352930274Rat
1304640Cpsf6cleavage and polyadenylation specific factor 675295658953001783Rat
41127999LOC120093601uncharacterized LOC12009360175303123153044412Rat
41061317LOC120093899U6 spliceosomal RNA75312126853121371Rat
41163580LOC120093602uncharacterized LOC12009360275315392053159148Rat
7710554LOC102550217uncharacterized LOC10255021775316179253172907Rat
1310532Cpmcarboxypeptidase M75322564753286220Rat
41397689LOC120093603uncharacterized LOC12009360375322943553235643Rat
1305332Mdm2MDM2 proto-oncogene75329066053315205Rat
11428166LOC108351461uncharacterized LOC10835146175333234453341706Rat
1564876Slc35e3solute carrier family 35, member E375333709153350152Rat
621160Nup107nucleoporin 10775335374053398345Rat
620577Rap1bRAP1B, member of RAS oncogene family75342303953456388Rat
7733495LOC102550469NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-like75344091753441370Rat
41116110LOC120093604swi5-dependent recombination DNA repair protein 1 homolog75345838153461341Rat
41166350LOC120093606uncharacterized LOC12009360675346869753474503Rat
41181410LOC120093605uncharacterized LOC12009360575347407453477118Rat
41103456LOC120093607uncharacterized LOC12009360775349040553495755Rat
7725676LOC102550659uncharacterized LOC10255065975351829153525492Rat
41135449LOC120093865basic proline-rich protein-like75354472253546293Rat
1306282RGD1306282similar to RIKEN cDNA 4432406C0575355337853570587Rat
11389551LOC108351462uncharacterized LOC10835146275361951753629569Rat
11429701LOC108351463uncharacterized LOC10835146375367989253695346Rat
41304359LOC120093608uncharacterized LOC12009360875370698953713032Rat
7718419LOC102551023uncharacterized LOC10255102375371786953729789Rat
1561092Mdm1Mdm1 nuclear protein75372960353766034Rat
1561292Il22interleukin 2275380120653805673Rat
9117410LOC103692876small ubiquitin-related modifier 2 pseudogene75387473853875151Rat
2866Ifnginterferon gamma75390333953907375Rat
41268730LOC120093851uncharacterized LOC12009385175420826754212875Rat
1312039Dyrk2dual specificity tyrosine phosphorylation regulated kinase 275434872454381363Rat
41006911LOC120093866glyceraldehyde-3-phosphate dehydrogenase-like75438234054384816Rat
41324281LOC120093609uncharacterized LOC12009360975440855354439053Rat
7680912LOC102551387uncharacterized LOC10255138775462867154668020Rat
620479Cand1cullin-associated and neddylation-dissociated 175468111454719002Rat
41388923LOC120093610uncharacterized LOC12009361075473125654749431Rat
41246595LOC120093611uncharacterized LOC12009361175476188254772641Rat
1594497LOC366901similar to ribosomal protein S1275482751854827910Rat
2324060LOC100362798ubiquinol-cytochrome c reductase subunit75487514454875314Rat
41394217LOC120093612uncharacterized LOC12009361275488826954901551Rat
621667Grip1glutamate receptor interacting protein 175493485655592274Rat
41351791LOC120093803uncharacterized LOC12009380375509261455101337Rat
41052312LOC120093802uncharacterized LOC12009380275535615855359497Rat
1560103HelbDNA helicase B75558851055615979Rat
1308846Irak3interleukin-1 receptor-associated kinase 375565394955714371Rat
735173Tmbim4transmembrane BAX inhibitor motif containing 475571869055733277Rat
1308261LlphLLP homolog, long-term synaptic facilitation factor75573531755740341Rat
620617Hmga2high mobility group AT-hook 275587714555998813Rat
41181996LOC120093613uncharacterized LOC12009361375591315555941962Rat
7677968LOC102549309uncharacterized LOC10254930975596419955977306Rat
41260607LOC120093614uncharacterized LOC12009361475597827655988331Rat
7678454LOC102547249uncharacterized LOC10254724975599824456005560Rat
11502995LOC108351467uncharacterized LOC10835146775608042056091186Rat
41374847LOC120093989small nucleolar RNA SNORA1775611925456119374Rat
7542471LOC102547506uncharacterized LOC10254750675612579456140736Rat
41319368LOC120093615uncharacterized LOC12009361575617003956172387Rat
41150806LOC120093616uncharacterized LOC12009361675617856356194792Rat
1596851Msrb3methionine sulfoxide reductase B375626098556426004Rat
1562607Styx-ps1serine/threonine/tyrosine interacting protein, pseudogene 175636338956364593Rat
1596822Lemd3LEM domain containing 375641505356499047Rat
41235016LOC120093617uncharacterized LOC12009361775651237956527620Rat
619774Wif1Wnt inhibitory factor 175654805856618364Rat
41062969LOC120093618uncharacterized LOC12009361875664721756648890Rat
1561871RGD1561871similar to ribosomal protein S1075677264656773237Rat
1305255Tbc1d30TBC1 domain family, member 3075677957056869092Rat
40974068LOC120093619uncharacterized LOC12009361975686911656871824Rat
1305877Gnsglucosamine (N-acetyl)-6-sulfatase75688913956923170Rat
1311450Rassf3Ras association domain family member 375693589457000591Rat
1588588Tbk1TANK-binding kinase 175707783057110868Rat
1305562Xpotexportin for tRNA75711153657151847Rat
2322266LOC100360387hypothetical LOC10036038775715622057157537Rat
1561648RGD1561648RGD156164875717040657220930Rat
1565498Kics2KICSTOR subunit 275728421357299070Rat
1566260Srgap1SLIT-ROBO Rho GTPase activating protein 175732953257594681Rat
40973776LOC120093620uncharacterized LOC12009362075733351357348361Rat
40943516LOC120093867sentrin-specific protease 2-like75760698957608641Rat
41349511LOC120093868sentrin-specific protease 2-like75767292357674377Rat
41179485LOC120093869sentrin-specific protease 2-like75770148357703091Rat
41225140LOC120093621sentrin-specific protease 2-like75774299757743814Rat
7548711LOC102556382transmembrane emp24 domain-containing protein 2-like75776767257769695Rat
1309356Rxylt1ribitol xylosyltransferase 175777084157782695Rat
1594496Vps54-ps1vacuolar protein sorting 54 homolog (S. cerevisiae), pseudogene 175783223557834588Rat
2185Avpr1aarginine vasopressin receptor 1A75811430658118230Rat
1309528Ppm1hprotein phosphatase, Mg2+/Mn2+ dependent, 1H75833866158599547Rat
11463103LOC108351469uncharacterized LOC10835146975847271758482369Rat
41130914LOC120093622translation initiation factor IF-2-like75864181658646386Rat
2325604Mirlet7imicroRNA let-7i75864248558642569Rat
1308808Mon2MON2 homolog, regulator of endosome-to-Golgi trafficking75864937858728102Rat
11466148LOC108351468SNRPN upstream reading frame protein pseudogene75871471358716587Rat
41075487LOC120093623small nuclear ribonucleoprotein-associated protein N-like75871471358725898Rat
628795Usp15ubiquitin specific peptidase 1575875671458848778Rat
9685075Snora19small nucleolar RNA, H/ACA box 1975878050358780571Rat
1589429Tafa2TAFA chemokine like family member 275894259859418640Rat
40952871LOC120093870basic proline-rich protein-like75944207559443292Rat
41098039LOC120093624uncharacterized LOC12009362475952784359540971Rat
41286787LOC120093871protein crumbs homolog 1-like75958331659598561Rat
41375035LOC120093987small nucleolar RNA SNORA1775967884959678980Rat
1562536LOC500845LRRG0013175995394059969343Rat
40939206LOC120093872ferritin light chain 1-like76082544560837640Rat
7695057LOC102552186uncharacterized LOC10255218676097594361088913Rat
3691Slc16a7solute carrier family 16 member 776104366761211547Rat
41222853LOC120093625uncharacterized LOC12009362576107541061098225Rat
7654942LOC102552637uncharacterized LOC10255263776144449561496656Rat
7628604LOC102552423uncharacterized LOC10255242376149810261533554Rat
1560867LOC500846hypothetical protein LOC50084676167649261710711Rat
1561255Lrig3leucine-rich repeats and immunoglobulin-like domains 376181631361866275Rat
40991943LOC120093626uncharacterized LOC12009362676193670861940112Rat
1559995RGD1559995similar to developmental pluripotency associated 576252504462526042Rat
41034435NEWGENE_6576114transfer RNA threonine (anticodon AGU)76256550262565574Rat
41075389LOC120093627uncharacterized LOC12009362776262278762636248Rat
11399049LOC108351471uncharacterized LOC10835147176268101762702138Rat
40988719LOC120093981small nucleolar RNA SNORA1776268242462682554Rat
1597486LOC689000similar to DJ-1 protein76270611562706995Rat
7525893LOC102557532uncharacterized LOC10255753276270896262710729Rat
1588587Atp23ATP23 metallopeptidase and ATP synthase assembly factor homolog76271475262729893Rat
41359680LOC120093628uncharacterized LOC12009362876275332662760239Rat
11399716LOC108351472uncharacterized LOC10835147276280038462804985Rat
2319209Ctdsp2CTD small phosphatase 276280540062825306Rat
620301Aviladvillin76282545962844103Rat
1593058TsfmTs translation elongation factor, mitochondrial76282899762864784Rat
1590711Eef1akmt3EEF1A lysine methyltransferase 376285330462864558Rat
1593036Mettl1methyltransferase like 176286481662869202Rat
69192Cyp27b1cytochrome P450, family 27, subfamily b, polypeptide 176286934062876242Rat
1590688Marchf9membrane associated ring-CH-type finger 976287901762882495Rat
621120Cdk4cyclin-dependent kinase 476288564762889562Rat
1309876Tspan31tetraspanin 3176288955262892428Rat
628844Agap2ArfGAP with GTPase domain, ankyrin repeat and PH domain 276289728262914295Rat
1359574Os9OS9, endoplasmic reticulum lectin76291549862957591Rat
2318153LOC100362435coenzyme Q4 homolog (yeast)-like76295901462959701Rat
1565117RGD1565117similar to 40S ribosomal protein S2676298168762982757Rat
41223171LOC120093629uncharacterized LOC12009362976298519462988962Rat
620490B4galnt1beta-1,4-N-acetyl-galactosaminyl transferase 176298842962996190Rat
1564851Slc26a10solute carrier family 26, member 1076299516563005099Rat
735210Arhgef25Rho guanine nucleotide exchange factor 2576300593863013325Rat
1566181Dtx3deltex E3 ubiquitin ligase 376301376963018431Rat
621711Pip4k2cphosphatidylinositol-5-phosphate 4-kinase type 2 gamma76302000463035086Rat
1303035Kif5akinesin family member 5A76305189463089024Rat
1303182Dctn2dynactin subunit 276309206163107560Rat
1311050Mbd6methyl-CpG binding domain protein 676310756263115841Rat
62391Ddit3DNA-damage inducible transcript 376311564563121203Rat
1305321Mars1methionyl-tRNA synthetase 176312114263138550Rat
11465430LOC108351474glyceraldehyde-3-phosphate dehydrogenase-like76313856463142507Rat
1305342Arhgap9Rho GTPase activating protein 976314857363157025Rat
621673Gli1GLI family zinc finger 176315692663169579Rat
621196Inhbeinhibin subunit beta E76317755863178983Rat
7544233LOC102547832uncharacterized LOC10254783276318123263182934Rat
621194Inhbcinhibin subunit beta C76318414163197630Rat
41303428LOC120093804uncharacterized LOC12009380476319268763199370Rat
1310066R3hdm2R3H domain containing 276321251963340574Rat
7520545LOC102553930elongation factor 1-alpha 1-like76322731663228116Rat
41067915LOC120093917U6 spliceosomal RNA76323651363236622Rat
1598068LOC681203similar to peptidylprolyl isomerase D76327886463280213Rat
1308964Stac3SH3 and cysteine rich domain 376334307863350590Rat
2324558Ndufa4l2NDUFA4, mitochondrial complex associated like 276335102163359010Rat
1308582Shmt2serine hydroxymethyltransferase 276335896163364293Rat
628723Nxph4neurexophilin 476336775863376579Rat
1307535Lrp1LDL receptor related protein 176338032563461029Rat
41348715LOC120093805uncharacterized LOC12009380576344527163453892Rat
1309063Stat6signal transducer and activator of transcription 676348022963497551Rat
1311712Nab2Ngfi-A binding protein 276349758963504105Rat
1587179Nemp1nuclear envelope integral membrane protein 176351402563538791Rat
3135Myo1amyosin IA76354298863557944Rat
3809Tac3tachykinin precursor 376356255263569170Rat
1306532Zbtb39zinc finger and BTB domain containing 3976357703063584527Rat
61903Gpr182G protein-coupled receptor 18276358599763589088Rat
41371502LOC120093806retinol dehydrogenase 7-like76359739663600224Rat
41090800LOC120093075retinol dehydrogenase 16-like76360472863613424Rat
735050Rdh16retinol dehydrogenase 1676361672463624120Rat
41109545LOC120093873retinol dehydrogenase 16-like76362868663638448Rat
1561812RGD1561812similar to Retinol dehydrogenase type II (RODH II) (29 k-protein)76364230563645149Rat
41225766LOC120093808retinol dehydrogenase 7-like76365723663657675Rat
631370Rdh7retinol dehydrogenase 776367601663689375Rat
41087577LOC120093807protein NYNRIN-like76368255763684405Rat
628716Sdr9c7short chain dehydrogenase/reductase family 9C, member 776370378863720325Rat
1311971Uqcrbubiquinol-cytochrome c reductase binding protein76381478463820150Rat
7570063LOC102549197uncharacterized LOC10254919776382025363826069Rat
735158Mterf3mitochondrial transcription termination factor 376382641863844747Rat
40928360LOC1200938965S ribosomal RNA76384051063840625Rat
1308949Ptdss1phosphatidylserine synthase 176384501763906791Rat
1583275Esco2-ps1establishment of cohesion 1 homolog 2 (S. cerevisiae), pseudogene 176394820763951641Rat
1583261LOC685039similar to LIM motif-containing protein kinase 2 isoform b76404610364047200Rat
3649Sdc2syndecan 276412718564239885Rat
41205965LOC120093630ligand-dependent nuclear receptor-interacting factor 1-like76423083564237143Rat
628610Cpqcarboxypeptidase Q76426402564830867Rat
9336170LOC103692875translationally-controlled tumor protein pseudogene76436642264373306Rat
41192745LOC120094055U6 spliceosomal RNA76444494264445048Rat
1311262Tspyl5TSPY-like 576488109264885538Rat
1583210LOC685093similar to spermatogenesis associated 176498533164989584Rat
1597752LOC685130similar to tumor protein, translationally-controlled 176512195965122559Rat
1562404RGD1562404similar to ribosomal protein S1876514312765143670Rat
41182883LOC120093916U6 spliceosomal RNA76517002665170131Rat
1591678LOC681724similar to 40S ribosomal protein S1776523948265239890Rat
1591667LOC681736similar to Glycolipid transfer protein (GLTP)76524160465244954Rat
620992Mtdhmetadherin76530646465365647Rat
41364015LOC120093852uncharacterized LOC12009385276542170165423066Rat
1311853Laptm4blysosomal protein transmembrane 4 beta76543452565477386Rat
1305353Matn2matrilin 276549499665644613Rat
41226631LOC120093957small nucleolar RNA SNORA2876564737865647501Rat
621201Rpl30ribosomal protein L3076564847065651363Rat
41001841LOC120093944small nucleolar RNA SNORA7276564875865648889Rat
1590540Erich5glutamate-rich 576565582965682221Rat
70940Ridareactive intermediate imine deaminase A homolog76569142965705257Rat
1308609Pop1POP1 homolog, ribonuclease P/MRP subunit76570534865733143Rat
40964218LOC120093927U6 spliceosomal RNA76573366365733772Rat
41116471LOC120093874uncharacterized LOC12009387476575678265765252Rat
1564315Nipal2NIPA-like domain containing 276577447765884807Rat
41236297LOC120093631uncharacterized LOC12009363176578842665790438Rat
41171344LOC120093976small nucleolar RNA SNORA4876588135665881494Rat
7673256LOC102553465uncharacterized LOC10255346576600282266005251Rat
621525Kcns2potassium voltage-gated channel, modifier subfamily S, member 276602235266028422Rat
68412Stk3serine/threonine kinase 376605320966323292Rat
1305812Osr2odd-skipped related transciption factor 276648784166495003Rat
41276452LOC120093853uncharacterized LOC12009385376649664666501457Rat
2320291LOC100361374hypothetical LOC10036137476654679966550930Rat
1311183Vps13bvacuolar protein sorting 13 homolog B76655786267128429Rat
9428725LOC103692884pre-mRNA-splicing factor SPF27 pseudogene76662017466628176Rat
1585800LOC680989similar to similar to mKIAA0431 protein76676228366767117Rat
2325477Mir875microRNA 87576686195566862027Rat
620616Cox6ccytochrome c oxidase subunit 6C76712926567142001Rat
1562981LOC500684hypothetical protein LOC50068476715283467154825Rat
1565056RGD1565056similar to ribosomal protein S2476716762267168537Rat
1565493Rgs22regulator of G-protein signaling 2276718853167308805Rat
1310225Fbxo43F-box protein 4376733316167346751Rat
2319895Polr2kRNA polymerase II, I and III subunit K76734711867359466Rat
41297372LOC120093974U1 spliceosomal RNA76735160467351766Rat
1310702Spag1sperm associated antigen 176736147467421369Rat
41261583LOC120094040U4 spliceosomal RNA76741311867413276Rat
1307807Rnf19aring finger protein 19A, RBR E3 ubiquitin protein ligase76742583367465214Rat
7499219LOC102554106uncharacterized LOC10255410676746314367474348Rat
41311683LOC120093875L-lactate dehydrogenase A chain-like76747783267482843Rat
7630248LOC102554030uncharacterized LOC10255403076749537167497855Rat
1309382Ankrd46ankyrin repeat domain 4676764720267668180Rat
1309483Snx31sorting nexin 3176767651467776925Rat
619838Pabpc1poly(A) binding protein, cytoplasmic 176777743867789731Rat
7744477LOC102555439splicing factor 1-like76778968467803388Rat
1359425LOC362901Ac125476791346367936165Rat
3980Ywhaztyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta76794135367963651Rat
6497839LOC100910524uncharacterized LOC10091052476811051368115078Rat
1563959Zfp706zinc finger protein 70676816749968174042Rat
40982949LOC120093854ferritin light chain 1-like76830712868307785Rat
1561191Grhl2grainyhead-like transcription factor 276840028768530269Rat
1560287Ncaldneurocalcin delta76853267168964740Rat
40939488LOC120093632nucleus accumbens-associated protein 1-like76858832768589999Rat
41101397LOC12009387660S ribosomal protein L29-like76865036068650662Rat
7696807LOC102549311uncharacterized LOC10254931176888183468917953Rat
40991499LOC120093633uncharacterized LOC12009363376891795168929768Rat
41182468LOC120093634uncharacterized LOC12009363476900814269032204Rat
41398940LOC120093635uncharacterized LOC12009363576901649569041792Rat
1306045Rrm2bribonucleotide reductase regulatory TP53 inducible subunit M2B76907702469108742Rat
621236Ubr5ubiquitin protein ligase E3 component n-recognin 576911675869224490Rat
41378596LOC120093636spidroin-1-like76922441069237216Rat
1589002LOC685884similar to poly (A) polymerase beta (testis specific)76927543269276655Rat
41391265LOC120093637uncharacterized LOC12009363776928419369332561Rat
11511017LOC10835148240S ribosomal protein S2976929476269295070Rat
40954004LOC120093638uncharacterized LOC12009363876933262569335534Rat
9399550LOC103692890uncharacterized LOC10369289076936902169377312Rat
3228Odf1outer dense fiber of sperm tails 176937742769389662Rat
7607416LOC102550353uncharacterized LOC10255035376941872069426671Rat
621652Klf10Kruppel-like factor 1076946765869473726Rat
41034532LOC120093639uncharacterized LOC12009363976957421069584354Rat
2318945LOC100362035ring finger protein 14976961601469619900Rat
61934Azin1antizyme inhibitor 176965477369681578Rat
41029905LOC120093640uncharacterized LOC12009364076968646069696731Rat
41148025LOC120093641uncharacterized LOC12009364176971163269717802Rat
7709136LOC102550582uncharacterized LOC10255058276977538169783840Rat
1311082Atp6v1c1ATPase H+ transporting V1 subunit C176983446469872278Rat
628703BaalcBAALC binder of MAP3K1 and KLF476991899869992289Rat
628816Fzd6frizzled class receptor 677005501270086781Rat
41061388LOC120094004small nucleolar RNA SNORA1777008958370089747Rat
628801Cthrc1collagen triple helix repeat containing 177012247470132756Rat
1565789Slc25a32solute carrier family 25 member 3277014295870160726Rat
1308458Dcaf13DDB1 and CUL4 associated factor 1377016098370196142Rat
41183437LOC120093855glyceraldehyde-3-phosphate dehydrogenase-like77021857670220530Rat
620001Rims2regulating synaptic membrane exocytosis 277024810470759134Rat
9426508LOC103692901non-histone chromosomal protein HMG-17 pseudogene77046494570465342Rat
41031770LOC120093966small nucleolar RNA SNORA4877077971470779856Rat
1310435Dcstampdendrocyte expressed seven transmembrane protein77080745570822067Rat
68376Dpysdihydropyrimidinase77082264870929255Rat
1304943Lrp12LDL receptor related protein 1277094106871012409Rat
41122073LOC120093642uncharacterized LOC12009364277103645371041241Rat
1565735RGD1565735similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12)77107256671073546Rat
41255602LOC120094033U2 spliceosomal RNA77111313671113342Rat
2318573LOC100362212zinc finger, CCHC domain containing 10-like77127388271276787Rat
9196150LOC103692893uncharacterized LOC10369289377135055471411463Rat
11463877LOC108351485uncharacterized LOC10835148577166616071679410Rat
1306021Zfpm2zinc finger protein, multitype 277167865872116209Rat
41126079LOC120093643uncharacterized LOC12009364377175546871761836Rat
41188976LOC120093644uncharacterized LOC12009364477208651072087989Rat
41120258LOC120093645uncharacterized LOC12009364577220278972209408Rat
7655393LOC102556196uncharacterized LOC10255619677236933972427830Rat
621857Oxr1oxidation resistance 177252878272965666Rat
41018571LOC12009380960S ribosomal protein L31-like77263215572632554Rat
41181863LOC120094047U6 spliceosomal RNA77266649772666603Rat
40939062LOC120093810uncharacterized LOC12009381077287488672890974Rat
708493Abraactin-binding Rho activating protein77297018772974255Rat
41209510LOC120093954small nucleolar RNA SNORA477299314272993230Rat
41313047LOC120094010small nucleolar RNA SNORA1777304414473044260Rat
41139740LOC120093646BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like77304476673047572Rat
11484283LOC108351490uncharacterized LOC10835149077307882973139627Rat
40947210LOC120094048U6 spliceosomal RNA77323317873233284Rat
41211778LOC120094034U2 spliceosomal RNA77340216173402292Rat
9388790LOC103692897anaphase-promoting complex subunit CDC26 pseudogene77346239673462806Rat
1594493LOC366922similar to keratin complex 1, acidic, gene 1877346695373469075Rat
628896Angpt1angiopoietin 177352834573783953Rat
7673863LOC102547184uncharacterized LOC10254718477378360673793293Rat
7688552LOC102547251uncharacterized LOC10254725177379868273801121Rat
41033239LOC120093647uncharacterized LOC12009364777402493774062258Rat
41157951LOC120093933U7 small nuclear RNA77403049474030556Rat
1562331Rspo2R-spondin 277409637874239398Rat
1311521Eif3el1eukaryotic translation initiation factor 3, subunit E-like 177433984874372483Rat
1594492LOC366923similar to mortality factor 4 like 177452741274528663Rat
1310430Emc2ER membrane protein complex subunit 277458719674624163Rat
41319180LOC120094042U4 spliceosomal RNA77474469274744827Rat
1566279Tmem74transmembrane protein 7477492928674937973Rat
41130380LOC120094049U6 spliceosomal RNA77497115674971262Rat
9273439Eif3eeukaryotic translation initiation factor 3 subunit E77525736675265601Rat
3904Trhrthyrotropin releasing hormone receptor77534867275393310Rat
41084824LOC120094006small nucleolar RNA SNORA1777551134175511466Rat
1310624Nudcd1NudC domain containing 177555065075595976Rat
1596439Eny2ENY2, transcription and export complex 2 subunit77558121575605903Rat
1310406Pkhd1l1PKHD1 like 177562038475795335Rat
1307293Ebag9estrogen receptor binding site associated, antigen, 977581095075828902Rat
1564335Sybusyntabulin77584700075948919Rat
1309489RGD1309489similar to Est1p-like protein B77591752776051832Rat
41079558LOC120094031U2 spliceosomal RNA77606916476069307Rat
41104726LOC120093973small nucleolar RNA SNORA4877610616776106298Rat
41357363LOC120093648uncharacterized LOC12009364877613253876167127Rat
621264Kcnv1potassium voltage-gated channel modifier subfamily V member 177626069576269170Rat
11459737LOC108351622uncharacterized LOC10835162277682649976831983Rat
41402332LOC120093856uncharacterized LOC12009385677690252176906097Rat
1582945LOC688962similar to ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)77790689177908547Rat
6500921LOC10090991860S ribosomal protein L6-like77809812878101722Rat
7680464LOC102551754uncharacterized LOC10255175477865337478658701Rat
1598176LOC503152similar to eukaryotic translation initiation factor 4B77872178978723699Rat
1594530Csmd3CUB and Sushi multiple domains 377874732280066466Rat
9394853LOC103692900histone deacetylase 1 pseudogene77893331978937424Rat
40946632LOC120093991small nucleolar RNA SNORA1777899559678995719Rat
41164982LOC120093811uncharacterized LOC12009381177903590179060192Rat
41372429LOC120093812uncharacterized LOC12009381277936796079387528Rat
9226732LOC103692908putative thymosin beta-4-like protein 677978165479781818Rat
41321218LOC120094013small nucleolar RNA SNORA2678013089380131008Rat
2324771LOC100363118hypothetical LOC10036311878014008780332987Rat
41356974LOC120093943U7 small nuclear RNA78018072880180791Rat
1332703Olr1100-psolfactory receptor pseudogene 110078051937080519736Rat
40980018LOC120093857uncharacterized LOC12009385778064606280652572Rat
1311883Trps1transcriptional repressor GATA binding 178191666882142733Rat
41396341LOC120093649uncharacterized LOC12009364978202511382045293Rat
7567645LOC102548590uncharacterized LOC10254859078223776582247335Rat
7548946LOC102548754uncharacterized LOC10254875478257677982604720Rat
11477543LOC10835158260S ribosomal protein L15 pseudogene78281934482828097Rat
735178Eif3heukaryotic translation initiation factor 3, subunit H78309104583174436Rat
1307179Utp23UTP23, small subunit processome component78318518783196652Rat
1594491LOC366928similar to 40S ribosomal protein S1678321863783219115Rat
1594529Rad21RAD21 cohesin complex component78328786783314810Rat
41137420LOC120093650uncharacterized LOC12009365078333277383340980Rat
631378Aardalanine and arginine rich domain containing protein78336447883369319Rat
1594490LOC366929similar to 40S ribosomal protein S3a (V-fos transformation effector protein)78341236983413165Rat
2323224LOC100363319high mobility group nucleosomal binding domain 278352004683520312Rat
1308282Slc30a8solute carrier family 30 member 878359199383627786Rat
41135575LOC120093651uncharacterized LOC12009365178372558483732362Rat
41223521LOC120094032U2 spliceosomal RNA78378336083783437Rat
41050819LOC120093918U6 spliceosomal RNA78379568283795784Rat
41210447LOC120093982small nucleolar RNA SNORA1778379870083798831Rat
1594788LOC689264similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)78393317183934513Rat
1309369Med30mediator complex subunit 3078400471084028064Rat
1594489LOC366931similar to protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform78425782784259665Rat
1587375Ext1exostosin glycosyltransferase 178437576984654625Rat
41190574LOC120093653cytochrome c oxidase assembly factor 6 homolog78473402184744492Rat
41348804LOC120093652glyceraldehyde-3-phosphate dehydrogenase-like78474473684746963Rat
1561402Samd12sterile alpha motif domain containing 1278476885085064057Rat
41031164LOC120093656uncharacterized LOC12009365678483629384870077Rat
40943775LOC120093986small nucleolar RNA SNORA1778491957684919697Rat
40986003LOC120093655uncharacterized LOC12009365578492961684938592Rat
41335646LOC12009365440S ribosomal protein S25-like78515594385156357Rat
1594488LOC366933similar to proteasome (prosome, macropain) subunit, beta type 778528695685287689Rat
41171629LOC120093858uncharacterized LOC12009385878538125985394885Rat
619802Tnfrsf11bTNF receptor superfamily member 11B78556652085594526Rat
41062197LOC120094018U1 spliceosomal RNA78563665085636794Rat
1307149Colec10collectin subfamily member 1078574489585806368Rat
7507053LOC102546504glyceraldehyde-3-phosphate dehydrogenase-like78581179285814750Rat
9109499LOC103692934ubiquitin-conjugating enzyme E2 C pseudogene78582632585826798Rat
735066Mal2mal, T-cell differentiation protein 278590045385933433Rat
621553Ccn3cellular communication network factor 378609400086101022Rat
1566354RGD1566354similar to Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh)78611280586113417Rat
40939717LOC120093970small nucleolar RNA SNORA4878612446586124606Rat
69298Enpp2ectonucleotide pyrophosphatase/phosphodiesterase 278620234586325050Rat
41167073LOC120093657uncharacterized LOC12009365778632514086332561Rat
621487Taf2TATA-box binding protein associated factor 278642261386479616Rat
1561749Dscc1DNA replication and sister chromatid cohesion 178648258886498212Rat
2321290H3f3cH3 histone family member 3C78650109486502133Rat
1587372LOC299934similar to 60S ribosomal protein L778650871986510997Rat
1561030DeptorDEP domain containing MTOR-interacting protein78651485986668817Rat
41091710LOC120093932U7 small nuclear RNA78667191886671981Rat
41285670LOC120093939U7 small nuclear RNA78667199086672051Rat
1565732RGD1565732similar to ribosomal protein L3178668697286687528Rat
1305806Col14a1collagen type XIV alpha 1 chain78672209386937215Rat
9457468LOC103692916eukaryotic translation initiation factor 1 pseudogene78673517886735670Rat
1359587Mrpl13mitochondrial ribosomal protein L1378695154186973147Rat
1565672MtbpMDM2 binding protein78697306987055775Rat
41119759LOC120093658uncharacterized LOC12009365878704169787043506Rat
1307728Sntb1syntrophin, beta 178706092687329315Rat
41102902NEWGENE_6576126transfer RNA lysine (anticodon CUU)78734897787349051Rat
6487874LOC10091234560S ribosomal protein L13-like78755382387554447Rat
2781Has2hyaluronan synthase 278811332688139337Rat
11378131LOC108351495uncharacterized LOC10835149578813720988141630Rat
1587371LOC299943similar to beta-catenin78869826088702180Rat
1304605Slc22a22solute carrier family 22 (organic cation transporter), member 2278872042588750111Rat
1564131RGD1564131similar to solute carrier family 25, member 578880321988804706Rat
41099658LOC120093877nucleolar and spindle-associated protein 1-like78889526888898116Rat
41339717LOC120093659uncharacterized LOC12009365978903345189129176Rat
40985792LOC120093906U6 spliceosomal RNA78917736789177472Rat
727926Zhx2zinc fingers and homeoboxes 278922635889374266Rat
7644388LOC102553568uncharacterized LOC10255356878928907289294246Rat
7551511LOC102553429uncharacterized LOC10255342978936368589373007Rat
1311835Derl1derlin 178940441389427095Rat
1587370Tbc1d31TBC1 domain family, member 3178942735489506894Rat
6486559LOC10091247260S ribosomal protein L37-like78943757089438522Rat
7600061Rps27a-ps10ribosomal protein S27a, pseudogene 1078945418289454719Rat
11437639Trnam-cau2transfer RNA methionine (anticodon CAU) 278951287089512942Rat
1565606Fam83afamily with sequence similarity 83, member A78952282689547284Rat
41354571LOC120093813uncharacterized LOC12009381378954876389551517Rat
1310852RGD1310852similar to RIKEN cDNA 9130401M0178955889089569810Rat
620010Zhx1zinc fingers and homeoboxes 178958236389611337Rat
1586397LOC689903similar to ribosomal protein S1078963168989634002Rat
1304849Atad2ATPase family, AAA domain containing 278963412389676738Rat
1311362Ntaq1N-terminal glutamine amidase 178968431889704484Rat
41193271LOC120093937U7 small nuclear RNA78968648889686549Rat
41018428LOC120094017small nucleolar RNA SNORA1178969178289691908Rat
620373Fbxo32F-box protein 3278973162689764761Rat
7724275LOC102549374uncharacterized LOC10254937478979212289798831Rat
41319479LOC120093814uncharacterized LOC12009381478985043489854677Rat
1564169Klhl38kelch-like family member 3878985401589864352Rat
1307545Anxa13annexin A1378988435689936907Rat
1586304Fam91a1family with sequence similarity 91, member A178996955890007546Rat
7710569LOC102549439zinc finger CCHC domain-containing protein 9-like78999776890000881Rat
41368912LOC120093660uncharacterized LOC12009366079004013990048215Rat
1564703Fer1l6fer-1-like family member 679009356790216907Rat
41210892LOC120093878keratin-associated protein 10-4-like79031397690317422Rat
1563224Tmem65transmembrane protein 6579033699790378930Rat
41009218LOC120093661uncharacterized LOC12009366179037339690375705Rat
41259774LOC120093985U1 spliceosomal RNA79037444990374604Rat
9379903LOC103690428uncharacterized LOC10369042879038484590389902Rat
1562739RGD1562739similar to STELLA79040283290404317Rat
1307127Trmt12tRNA methyltransferase 1279041784690419472Rat
1306670Rnf139ring finger protein 13979043972690450911Rat
1585145Tatdn1TatD DNase domain containing 179045102590481000Rat
1307114Ndufb9NADH:ubiquinone oxidoreductase subunit B979048101390487360Rat
1309883Mtss1MTSS I-BAR domain containing 179048875190628007Rat
41110337LOC120093662uncharacterized LOC12009366279054245290549865Rat
3755Sqlesqualene epoxidase79086797390883623Rat
1564420Washc5WASH complex subunit 579088433390936118Rat
1305156Nsmce2NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase79093611291173435Rat
11452395LOC108351498uncharacterized LOC10835149879117594191181619Rat
11483376LOC108351497uncharacterized LOC10835149779119165191198960Rat
1584048LOC690120hypothetical protein LOC69012079120524991206171Rat
621596Trib1tribbles pseudokinase 179120657991213126Rat
41063713LOC120093663uncharacterized LOC12009366379124652491351728Rat
1560979RGD1560979hypothetical gene supported by NM_03170979126764591268052Rat
41035867LOC120094053U6 spliceosomal RNA79137067191370777Rat
7533260LOC102551999uncharacterized LOC10255199979139760591407240Rat
40934539LOC120093664uncharacterized LOC12009366479142761691449462Rat
41108340LOC120093859phosphoglycerate mutase 1-like79148702691487671Rat
11458799LOC10835149960S ribosomal protein L15 pseudogene79151969791520695Rat
1564901LOC500876LOC50087679161629791618030Rat
41393725LOC120093914U6 spliceosomal RNA79169334391693442Rat
7750896LOC102552490uncharacterized LOC10255249079171694691768010Rat
7665134LOC102552316uncharacterized LOC10255231679174741291753435Rat
1563100RGD1563100similar to KIAA008979194025891942125Rat
41261377LOC120094056U6 spliceosomal RNA79206798292068087Rat
41222771LOC120093879keratin-associated protein 5-3-like79208875792089368Rat
41311443LOC120093988small nucleolar RNA SNORA1779227354192273672Rat
1564515RGD1564515similar to alpha 1B-glycoprotein79231493092318652Rat
41329869LOC120093665U6 snRNA-associated Sm-like protein LSm679232238592338965Rat
1563390LOC500877Ab1-15279233907892384009Rat
1562236Lratd2LRAT domain containing 279237671392387045Rat
1359428LOC362921Ac2-22479244426892464745Rat
7637212LOC102553044growth hormone-inducible transmembrane protein-like79245969592460814Rat
69417A1bgalpha-1-B glycoprotein79249393492498460Rat
41157576LOC120093667uncharacterized LOC12009366779261620892664552Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
39884D7Rat16921174771946647719673Ratregion
5069350AU04655514974772116747721291Ratregion
5069350AU04655514974772116747721315Ratregion
5063716BF40463610774788122347881330Ratregion
44253D7Got8328574796220047962485Ratregion
5060874BF39588918674831834248318528Ratregion
5080062RH14136121974832122548321444Ratregion
5087118AA80079918974832260048322789Ratregion
34789D7Rat4613174875897948759110Ratregion
44256D7Got919974887586048875959Ratregion
5088359AU04852220974909550049095709Ratregion
44255D7Got3912874913859049138718Ratregion
5507027fk81g07.x197474973636649736538Ratregion
39012D7Rat9824674975349649753746Ratregion
5034554BE11945316574994115849941323Ratregion
5080170RH14142518074994607849946258Ratregion
1632072D7Wox3312674994751949947647Ratregion
44257D7Got8017175003291450033085Ratregion
5064514BI30221320975006860450068813Ratregion
1579067D10Chm25021875014650150146536Ratregion
5055891RH14406210775035259250352699Ratregion
5026138RH13105822075036817250368392Ratregion
5026460RH13229815775068569550685852Ratregion
5059872BI27905218175068668550686866Ratregion
5044766RH13079118075080470450804884Ratregion
5085892BE09964618075090130950901489Ratregion
5077426RH13974919075090280450902994Ratregion
5031189AA99806021875090322550903443Ratregion
5029043RH14329921575100725751007472Ratregion
5084310AI17650519475106414251064336Ratregion
5067548AU04767819175107534451075530Ratregion
5040160RH12812420775108721851087425Ratregion
5085246AI59847022075108784051088060Ratregion
7206518UniSTS:54684293475108878451089718Ratregion
5505294Lgr5131375108968251090995Ratregion
5039348RH12765420275120987451210093Ratregion
5036223RH12564827475121044851210722Ratregion
5072946RH13714520875121057051210778Ratregion
5050940RH13434618075140085851401038Ratregion
44258D7Got14816675141562751415793Ratregion
5079524RH14104719575145776151457956Ratregion
5076092RH13897415575147558051475735Ratregion
5083251BF41703121475147700051477214Ratregion
5134356D7Uwm2425675168502951685285Ratregion
1632848D7Got23715675168505351685209Ratregion
5066628AU04824517475178135751781526Ratregion
5026256RH13151318075192939551929575Ratregion
5041512RH12889918075193951151939691Ratregion
5043848RH13026219375203438552034578Ratregion
5074400RH13799522175206384052064061Ratregion
5066708AU04819815175207689252077044Ratregion
5056243RH14426611475211407352114195Ratregion
5055835RH14403016475213826152138425Ratregion
5078430RH14033815175214961152149762Ratregion
5079862RH14124616075222239552222555Ratregion
5063996BE12039519475222578452225978Ratregion
5063208BI30141920575232182852322033Ratregion
5086183BM38473817975236933052369509Ratregion
5031522AU04805112775240113752401264Ratregion
5086220AI10328018475253084952531033Ratregion
5061204BE09927115175253151452531665Ratregion
5026234RH13142921175253242052532631Ratregion
5046050RH13152921575254529352545508Ratregion
5072610RH13694920875258029052581024Ratregion
5048846RH13314018175266268052662861Ratregion
5500575RH13603120775267111652671323Ratregion
5042622RH12954518375267155552671876Ratregion
5503788UniSTS:471082136475268698852688352Ratregion
5070612RH13460221775268791852688135Ratregion
5035759WI-1975125475269275052693004Ratregion
5503700MARC_36444-36445:1067884409:185875269638652697244Ratregion
5054781RH14342114875269856052699325Ratregion
5057410AA99651818975271130752711496Ratregion
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5033137RH13773415478328853983288693Ratregion
5076964RH13948121778328853983288756Ratregion
5026218RH13136718078329371283293892Ratregion
5086614AW53002915178331664083316791Ratregion
5035502AI22972016778336842583368592Ratregion
5051557AV32815212278336916183369283Ratregion
44272D7Got5815978337455083374709Ratregion
5089545AU04921919078349123183491421Ratregion
39938D7Rat14111778359195383592070Ratregion
5506076UniSTS:49830023478393359083933824Ratregion
44273D7Got5913978394715283947291Ratregion
5055277RH14370820778397328483973491Ratregion
5055277RH14370820778397328483974574Ratregion
35787D7Rat4217478400154684001720Ratregion
40068D7Rat16117578400599684006171Ratregion
5090009AU04949611178408303184083142Ratregion
5505306Ppp2r1b39178425913984259515Ratregion
5032289AI79039513678426145484261590Ratregion
5083940AA89327611678437238084372496Ratregion
5075668RH13872717878437661184376789Ratregion
5036290Ext114378437676484376907Ratregion
5081254RH14205419178438020884380399Ratregion
5030037AW53102815678457744084577596Ratregion
5507513ECD1222555078465396084654510Ratregion
5500767REN1333124778465398984654236Ratregion
5500763REN1332925578465443884654693Ratregion
5507515ECD1283052978465454884655077Ratregion
5500765REN1332622878465508984655317Ratregion
5088413AU04855417578473404684734221Ratregion
5026172RH131190078474399484744223Ratregion
5086471AA89165014578475776584757910Ratregion
5077242RH13964418178475785884758039Ratregion
5061514BE10538017878476908084769258Ratregion
41186D7Rat13918078492790684928080Ratregion
5065126BF40599924878494481784945065Ratregion
5082083BF41597812778516467985164806Ratregion
5031792AU04713125378518351985183774Ratregion
37642D7Rat11222878519688685197132Ratregion
67824D7Uwm1314778519875985198911Ratregion
44274D7Got6124578528769785287942Ratregion
5504815ha2170078533471085336306Ratregion
5501371STS-Z4144165978550317385503832Ratregion
629616D7Hmgc316878556775485567922Ratregion
44275D7Got6022578591358585913810Ratregion
44275D7Got6022578591358585913810Ratregion
5044504RH13064118978593163585931825Ratregion
5503082Nov12278609427886094400Ratregion
7192370Nov10478609443686095889Ratregion
5077676RH13989320178610069586100897Ratregion
5081871BI27390720378610438786104590Ratregion
5026730RH13331818878620255786202745Ratregion
60584D7Got6224278641483086415072Ratregion
5053687RH14279313078642267286422802Ratregion
5032082D15Mit18317678659185586592031Ratregion
5082075BF41592721578674492886745143Ratregion
5043648RH13014620278693589286936094Ratregion
5027038RH13449419678693687886937075Ratregion
5042440RH12943518778695158586951772Ratregion
44278D7Got15021378696127186961484Ratregion
5079040RH14070021878704175887042088Ratregion
5050274RH13396221578705974987059964Ratregion
7205768UniSTS:22471215578730177787301932Ratregion
5068508AU04710328078787799087878270Ratregion
60586D7Got6429978797287187973170Ratregion
5070029RH9442616178811470688114867Ratregion
5503892Hsh22378811577188115994Ratregion
5035939PMC314332P139478811579588116189Ratregion
5090671AU04989118978814454788144736Ratregion
5063140BI30134218278819538288195564Ratregion
67828D7Uwm1527878855769688557979Ratregion
5503061Ctnnb137778869949688699873Ratregion
44277D7Got6920678878793388788139Ratregion
44279D7Got6714278891620788916351Ratregion
60818D7Wox2813178915715689157281Ratregion
5033735RH13992619478936517789365371Ratregion
5062100BF39744115578936998389370138Ratregion
5081977BE11895615078938383889383988Ratregion
5073006RH13718020578940324089403445Ratregion
5075538RH13865113478940463489404768Ratregion
5047516RH13237221878940533889405556Ratregion
5503224UniSTS:23729731978940562489405943Ratregion
5081238RH14204520778943929589439502Ratregion
5034131RH14148018078950667689506856Ratregion
5070862RH13474818578954779889547983Ratregion
5049070RH13326921478958282289583036Ratregion
5040480RH12830718178963424589634426Ratregion
5043188RH129882078972597289726170Ratregion
5079818RH14122120878972797289728180Ratregion
5049416RH13346820578973041289730617Ratregion
67829D7Uwm1618478974027389740457Ratregion
67830D7Uwm1724778979838889798645Ratregion
5075348RH13854316978985942089859589Ratregion
36442D7Rat2015778986737689867533Ratregion
40348D7Rat14016278989811689898272Ratregion
5059810BE09795020479000218690002390Ratregion
5041698RH12900720879000724990007457Ratregion
5073922RH13771614879003330890033456Ratregion
5506987fd54e08.x1116879031757790318746Ratregion
5067726AU04757324379031844290318681Ratregion
37710D7Rat19018479032403890324226Ratregion
5072438RH13684915379033637590336528Ratregion
5073486RH13746420079033787290338072Ratregion
5080058RH14135918179041913690419317Ratregion
5035506EST3C713079045021790450347Ratregion
5042020RH12919218679048880890488994Ratregion
5050208RH13392420579048923990489444Ratregion
5087211AW5241289079049032490490414Ratregion
5056113RH14419020179053282490533025Ratregion
5059862BF40000522079062253490622754Ratregion
42342D7Rat23116479075610990756271Ratregion
5063546BE10777115079082217090822320Ratregion
44289D7Got7211879083629190836410Ratregion
5050142RH13388618979086843590868624Ratregion
5043738RH13019821179088336390883574Ratregion
5060408BE09801518779089012690890313Ratregion
44290D7Got7320779099577390995980Ratregion
5028905RH14277026779102333191023598Ratregion
5063744BF40496724479104380391044047Ratregion
5082321BE11918318779107738691077573Ratregion
42836D7Rat20220279113987691140102Ratregion
5041258RH12875315479115841291158566Ratregion
5026942RH13412618179120535491205535Ratregion
5055209RH14366919179120664091206831Ratregion
5083463BE10011918179121335191213532Ratregion
5505165Trib124879121390691214154Ratregion
1638909D7Wox4221179125631191256522Ratregion
34713D7Mgh1614079125631191256547Ratregion
36015D7Rat2115579128113091281285Ratregion
5080758RH14176519079128429491284484Ratregion
44292D7Got7120179130026791300468Ratregion
42213D7Arb1522179141238991412612Ratregion
34555D7Mgh614079141244491412594Ratregion
1638745D7Got25921379173768291737895Ratregion
5068626AU04703112079208092092081049Ratregion
5503228UniSTS:23730420879238638092386588Ratregion
Position Markers

Flank 1: (D7Rat23)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,151,326 - 70,151,553 (+)MAPPER
Rnor_6.0777,995,576 - 77,995,802NCBI
Rnor_5.0778,253,693 - 78,253,919UniSTS
RGSC_v3.4774,658,964 - 74,659,191RGD
RGSC_v3.4774,658,965 - 74,659,191UniSTS
RGSC_v3.1774,679,694 - 74,679,921RGD
Celera767,207,745 - 67,207,971UniSTS
SHRSP x BN Map745.53UniSTS
SHRSP x BN Map745.53RGD
Cytogenetic Map7q22UniSTS
Peak: (D7Rat23)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,151,326 - 70,151,553 (+)MAPPER
Rnor_6.0777,995,576 - 77,995,802NCBI
Rnor_5.0778,253,693 - 78,253,919UniSTS
RGSC_v3.4774,658,964 - 74,659,191RGD
RGSC_v3.4774,658,965 - 74,659,191UniSTS
RGSC_v3.1774,679,694 - 74,679,921RGD
Celera767,207,745 - 67,207,971UniSTS
SHRSP x BN Map745.53UniSTS
SHRSP x BN Map745.53RGD
Cytogenetic Map7q22UniSTS
Flank 2: (D7Rat78)
Rat AssemblyChrPosition (strand)Source
Rnor_5.07123,378,628 - 123,378,833UniSTS
RGSC_v3.47120,536,569 - 120,536,775RGD
RGSC_v3.47120,536,570 - 120,536,775UniSTS
RGSC_v3.17120,570,799 - 120,571,005RGD
Celera7109,992,435 - 109,992,640UniSTS
RH 2.0 Map7678.9RGD
SHRSP x BN Map765.7799RGD
FHH x ACI Map753.35RGD
Cytogenetic Map7q34UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)72940968353612950Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
61435Cia4Collagen induced arthritis QTL 45.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)75811322462004598Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74110969256793354Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)77084011872474897Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
10450828Scl79Serum cholesterol level QTL 793.50.001blood HDL cholesterol amount (VT:0000184)blood low density lipoprotein cholesterol level (CMO:0000053)789867376101773158Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)77084011872474897Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78022129994811326Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78022129993595843Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general measurement method: at 26 weeks of age femur was removed and frozen at -20oC, later slices were cut from the femoral neck and total area (mm2) measurements taken from pQCT slices 2293456
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2293456
qtl_general software package: MAPMAKER/EXP 2293456
qtl_general allele: COP alleles affect the hip structure 2293456