Bmd29 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bmd29 (Bone mineral density QTL 29) Rattus norvegicus

Symbol: Bmd29
Name: Bone mineral density QTL 29
RGD ID: 2293644
Trait: femur size trait   (VT:1000369)    
Measurement Type: femoral neck cross-sectional area   (CMO:0001697)    
LOD Score: 5.4
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2747,651,439 - 92,651,439RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0755,495,689 - 100,495,689RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.0778,253,693 - 123,378,833RGDRnor_5.0
RGSC_v3.4774,658,964 - 120,536,775RGDRGSC_v3.4
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Sex-specific Genetic Loci for Femoral Neck Bone Mass and Strength Identified in Inbred COP and DA Rats. Alam I, etal., J Bone Miner Res. 2008 Feb 18;.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (D7Rat23)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,151,326 - 70,151,553 (+)MAPPER
Rnor_6.0777,995,576 - 77,995,802NCBI
Rnor_5.0778,253,693 - 78,253,919UniSTS
RGSC_v3.4774,658,964 - 74,659,191RGD
RGSC_v3.4774,658,965 - 74,659,191UniSTS
Celera767,207,745 - 67,207,971UniSTS
RGSC_v3.1774,679,694 - 74,679,921RGD
SHRSP x BN Map745.53UniSTS
SHRSP x BN Map745.53RGD
Cytogenetic Map7q22UniSTS
Peak: (D7Rat23)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2770,151,326 - 70,151,553 (+)MAPPER
Rnor_6.0777,995,576 - 77,995,802NCBI
Rnor_5.0778,253,693 - 78,253,919UniSTS
RGSC_v3.4774,658,964 - 74,659,191RGD
RGSC_v3.4774,658,965 - 74,659,191UniSTS
Celera767,207,745 - 67,207,971UniSTS
RGSC_v3.1774,679,694 - 74,679,921RGD
SHRSP x BN Map745.53UniSTS
SHRSP x BN Map745.53RGD
Cytogenetic Map7q22UniSTS
Flank 2: (D7Rat78)
Rat AssemblyChrPosition (strand)Source
Rnor_5.07123,378,628 - 123,378,833UniSTS
RGSC_v3.47120,536,569 - 120,536,775RGD
RGSC_v3.47120,536,570 - 120,536,775UniSTS
Celera7109,992,435 - 109,992,640UniSTS
RGSC_v3.17120,570,799 - 120,571,005RGD
RH 2.0 Map7678.9RGD
SHRSP x BN Map765.7799RGD
FHH x ACI Map753.35RGD
Cytogenetic Map7q34UniSTS


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general measurement method: at 26 weeks of age femur was removed and frozen at -20oC, later slices were cut from the femoral neck and total area (mm2) measurements taken from pQCT slices 2293456
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2293456
qtl_general software package: MAPMAKER/EXP 2293456
qtl_general allele: COP alleles affect the hip structure 2293456