Aia16 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Aia16 (Adjuvant induced arthritis QTL 16) Rattus norvegicus

Symbol: Aia16
Name: Adjuvant induced arthritis QTL 16
RGD ID: 2317035
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: right rear ankle joint diameter   (CMO:0002150)    
LOD Score: 2.71
P Value: Not Available
Variance: 9.5
Inheritance Type: dominant
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2759,238,038 - 104,238,038RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0768,518,460 - 113,518,460RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0768,456,672 - 113,456,672RGDRnor5.0
RGSC_v3.4765,025,373 - 110,025,373RGDRGSC3.4
Cross Type: intercross
Strains Crossed: F344/NCrl LEW/Crl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344/NCrl  (IEA)
LEW/Crl  (IEA)

References

References - curated
1. Bleich A, etal., Inflamm Bowel Dis. 2009 Jun 12;15(12):1794-1802.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3904Trhrthyrotropin releasing hormone receptor77534867275393310Rat
69431Ccn4cellular communication network factor 479864523898677253Rat
3649Sdc2syndecan 276412718564239885Rat
3130MycMYC proto-oncogene, bHLH transcription factor79359370593598633Rat
3135Myo1amyosin IA76354298863557944Rat
3848Tgthyroglobulin79841829398603210Rat
62391Ddit3DNA-damage inducible transcript 376311564563121203Rat
620001Rims2regulating synaptic membrane exocytosis 277024810470759134Rat
3228Odf1outer dense fiber of sperm tails 176937742769389662Rat
70940Ridareactive intermediate imine deaminase A homolog76569142965705257Rat
69298Enpp2ectonucleotide pyrophosphatase/phosphodiesterase 278620234586325050Rat
61903Gpr182G protein-coupled receptor 18276358599763589088Rat
69192Cyp27b1cytochrome P450, family 27, subfamily b, polypeptide 176286934062876242Rat
69222Kcnq3potassium voltage-gated channel subfamily Q member 379773021998025652Rat
68412Stk3serine/threonine kinase 376605320966323292Rat
69417A1bgalpha-1-B glycoprotein79249393492498460Rat
3691Slc16a7solute carrier family 16 member 776104366761211547Rat
620301Aviladvillin76282545962844103Rat
621236Ubr5ubiquitin protein ligase E3 component n-recognin 576911675869224490Rat
621264Kcnv1potassium voltage-gated channel modifier subfamily V member 177626069576269170Rat
621857Oxr1oxidation resistance 177252878272965666Rat
620010Zhx1zinc fingers and homeoboxes 178958236389611337Rat
621711Pip4k2cphosphatidylinositol-5-phosphate 4-kinase type 2 gamma76302000463035086Rat
628844Agap2ArfGAP with GTPase domain, ankyrin repeat and PH domain 276289728262914295Rat
628703BaalcBAALC binder of MAP3K1 and KLF476991899869992289Rat
628723Nxph4neurexophilin 476336775863376579Rat
631378Aardalanine and arginine rich domain containing protein78336447883369319Rat
620921Khdrbs3KH RNA binding domain containing, signal transduction associated 37100837707100995644Rat
621553Ccn3cellular communication network factor 378609400086101022Rat
61934Azin1antizyme inhibitor 176965477369681578Rat
621487Taf2TATA-box binding protein associated factor 278642261386479616Rat
621596Trib1tribbles pseudokinase 179120657991213126Rat
628801Cthrc1collagen triple helix repeat containing 177012247470132756Rat
621120Cdk4cyclin-dependent kinase 476288564762889562Rat
621194Inhbcinhibin subunit beta C76318414163197630Rat
621196Inhbeinhibin subunit beta E76317755863178983Rat
621201Rpl30ribosomal protein L3076564847065651363Rat
619838Pabpc1poly(A) binding protein, cytoplasmic 176777743867789731Rat
621652Klf10Kruppel-like factor 1076946765869473726Rat
619802Tnfrsf11bTNF receptor superfamily member 11B78556652085594526Rat
631373Slasrc-like adaptor79853443198584810Rat
621525Kcns2potassium voltage-gated channel, modifier subfamily S, member 276602235266028422Rat
3809Tac3tachykinin precursor 376356255263569170Rat
1305806Col14a1collagen type XIV alpha 1 chain78672209386937215Rat
735158Mterf3mitochondrial transcription termination factor 376382641863844747Rat
735066Mal2mal, T-cell differentiation protein 278590045385933433Rat
735050Rdh16retinol dehydrogenase 1676361672463624120Rat
1304943Lrp12LDL receptor related protein 1277094106871012409Rat
628610Cpqcarboxypeptidase Q76426402564830867Rat
735178Eif3heukaryotic translation initiation factor 3, subunit H78309104583174436Rat
727926Zhx2zinc fingers and homeoboxes 278922635889374266Rat
621673Gli1GLI family zinc finger 176315692663169579Rat
1304605Slc22a22solute carrier family 22 (organic cation transporter), member 2278872042588750111Rat
3755Sqlesqualene epoxidase79086797390883623Rat
3980Ywhaztyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta76794135367963651Rat
620373Fbxo32F-box protein 3278973162689764761Rat
1304849Atad2ATPase family, AAA domain containing 278963412389676738Rat
620616Cox6ccytochrome c oxidase subunit 6C76712926567142001Rat
1307807Rnf19aring finger protein 19A, RBR E3 ubiquitin protein ligase76742583367465214Rat
1306021Zfpm2zinc finger protein, multitype 277167865872116209Rat
735210Arhgef25Rho guanine nucleotide exchange factor 2576300593863013325Rat
2781Has2hyaluronan synthase 278811332688139337Rat
1305812Osr2odd-skipped related transciption factor 276648784166495003Rat
1306045Rrm2bribonucleotide reductase regulatory TP53 inducible subunit M2B76907702469108742Rat
2036Adcy8adenylate cyclase 879641731096665911Rat
1306532Zbtb39zinc finger and BTB domain containing 3976357703063584527Rat
1307379Asap1ArfGAP with SH3 domain, ankyrin repeat and PH domain 179578613096093111Rat
1307728Sntb1syntrophin, beta 178706092687329315Rat
1305156Nsmce2NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase79093611291173435Rat
1305342Arhgap9Rho GTPase activating protein 976314857363157025Rat
1305353Matn2matrilin 276549499665644613Rat
1307127Trmt12tRNA methyltransferase 1279041784690419472Rat
68376Dpysdihydropyrimidinase77082264870929255Rat
620992Mtdhmetadherin76530646465365647Rat
1310435Dcstampdendrocyte expressed seven transmembrane protein77080745570822067Rat
1311050Mbd6methyl-CpG binding domain protein 676310756263115841Rat
1308949Ptdss1phosphatidylserine synthase 176384501763906791Rat
1310886Zfatzinc finger and AT hook domain containing799886954100054288Rat
1303035Kif5akinesin family member 5A76305189463089024Rat
1307293Ebag9estrogen receptor binding site associated, antigen, 977581095075828902Rat
620490B4galnt1beta-1,4-N-acetyl-galactosaminyl transferase 176298842962996190Rat
1309876Tspan31tetraspanin 3176288955262892428Rat
1310430Emc2ER membrane protein complex subunit 277458719674624163Rat
1311082Atp6v1c1ATPase H+ transporting V1 subunit C176983446469872278Rat
1309883Mtss1MTSS I-BAR domain containing 179048875190628007Rat
1311362Ntaq1N-terminal glutamine amidase 178968431889704484Rat
1310852RGD1310852similar to RIKEN cDNA 9130401M0178955889089569810Rat
1311883Trps1transcriptional repressor GATA binding 178191666882142733Rat
1311971Uqcrbubiquinol-cytochrome c reductase binding protein76381478463820150Rat
1309081Col22a1collagen type XXII alpha 1 chain7103730939103968452Rat
631370Rdh7retinol dehydrogenase 776367601663689375Rat
1310406Pkhd1l1PKHD1 like 177562038475795335Rat
1311712Nab2Ngfi-A binding protein 276349758963504105Rat
1308989Gsdmcgasdermin C79559401595606106Rat
1310624Nudcd1NudC domain containing 177555065075595976Rat
1309382Ankrd46ankyrin repeat domain 4676764720267668180Rat
1310702Spag1sperm associated antigen 176736147467421369Rat
1308609Pop1POP1 homolog, ribonuclease P/MRP subunit76570534865733143Rat
1310066R3hdm2R3H domain containing 276321251963340574Rat
1311521Eif3el1eukaryotic translation initiation factor 3, subunit E-like 177433984874372483Rat
1307535Lrp1LDL receptor related protein 176338032563461029Rat
1307545Anxa13annexin A1378988435689936907Rat
1309483Snx31sorting nexin 3176767651467776925Rat
1309489RGD1309489similar to Est1p-like protein B77591752776051832Rat
1308133Fam135bfamily with sequence similarity 135, member B7103380981103649802Rat
1309369Med30mediator complex subunit 3078400471084028064Rat
1309373St3gal1ST3 beta-galactoside alpha-2,3-sialyltransferase 179884527098913409Rat
1310225Fbxo43F-box protein 4376733316167346751Rat
1305976Efr3aEFR3 homolog A79755267797633369Rat
1306670Rnf139ring finger protein 13979043972690450911Rat
1307303Ndrg1N-myc downstream regulated 179868448798725869Rat
1307149Colec10collectin subfamily member 1078574489585806368Rat
1307179Utp23UTP23, small subunit processome component78318518783196652Rat
1309063Stat6signal transducer and activator of transcription 676348022963497551Rat
1305321Mars1methionyl-tRNA synthetase 176312114263138550Rat
1308282Slc30a8solute carrier family 30 member 878359199383627786Rat
1332703Olr1100-psolfactory receptor pseudogene 110078051937080519736Rat
1307114Ndufb9NADH:ubiquinone oxidoreductase subunit B979048101390487360Rat
1308458Dcaf13DDB1 and CUL4 associated factor 1377016098370196142Rat
1308964Stac3SH3 and cysteine rich domain 376334307863350590Rat
1308582Shmt2serine hydroxymethyltransferase 276335896163364293Rat
1307697CyribCYFIP related Rac1 interactor B79563387695760588Rat
1563224Tmem65transmembrane protein 6579033699790378930Rat
1561402Samd12sterile alpha motif domain containing 1278476885085064057Rat
1560287Ncaldneurocalcin delta76853267168964740Rat
1561812RGD1561812similar to Retinol dehydrogenase type II (RODH II) (29 k-protein)76364230563645149Rat
1565056RGD1565056similar to ribosomal protein S2476716762267168537Rat
628816Fzd6frizzled class receptor 677005501270086781Rat
1563390LOC500877Ab1-15279233907892384009Rat
1563959Zfp706zinc finger protein 70676816749968174042Rat
1563100RGD1563100similar to KIAA008979194025891942125Rat
1560979RGD1560979hypothetical gene supported by NM_03170979126764591268052Rat
1562981LOC500684hypothetical protein LOC50068476715283467154825Rat
1565672MtbpMDM2 binding protein78697306987055775Rat
1565732RGD1565732similar to ribosomal protein L3178668697286687528Rat
1565735RGD1565735similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC 1.2.1.12)77107256671073546Rat
1562331Rspo2R-spondin 277409637874239398Rat
1560867LOC500846hypothetical protein LOC50084676167649261710711Rat
1564851Slc26a10solute carrier family 26, member 1076299516563005099Rat
1560141Phf20l1PHD finger protein 20-like 179833058098396526Rat
1564315Nipal2NIPA-like domain containing 276577447765884807Rat
1311262Tspyl5TSPY-like 576488109264885538Rat
708493Abraactin-binding Rho activating protein77297018772974255Rat
1564169Klhl38kelch-like family member 3878985401589864352Rat
1559937Dnaaf11dynein axonemal assembly factor 1179814152598245906Rat
628896Angpt1angiopoietin 177352834573783953Rat
628716Sdr9c7short chain dehydrogenase/reductase family 9C, member 776370378863720325Rat
1561191Grhl2grainyhead-like transcription factor 276840028768530269Rat
1311183Vps13bvacuolar protein sorting 13 homolog B76655786267128429Rat
1303182Dctn2dynactin subunit 276309206163107560Rat
1559995RGD1559995similar to developmental pluripotency associated 576252504462526042Rat
1564703Fer1l6fer-1-like family member 679009356790216907Rat
1359425LOC362901Ac125476791346367936165Rat
1359428LOC362921Ac2-22479244426892464745Rat
1564901LOC500876LOC50087679161629791618030Rat
1311835Derl1derlin 178940441389427095Rat
1359587Mrpl13mitochondrial ribosomal protein L1378695154186973147Rat
1311853Laptm4blysosomal protein transmembrane 4 beta76543452565477386Rat
1359574Os9OS9, endoplasmic reticulum lectin76291549862957591Rat
1359449RGD1359449gasdermin domain containing protein RGD135944979562005295630546Rat
1562404RGD1562404similar to ribosomal protein S1876514312765143670Rat
1586397LOC689903similar to ribosomal protein S1078963168989634002Rat
1583210LOC685093similar to spermatogenesis associated 176498533164989584Rat
1585800LOC680989similar to similar to mKIAA0431 protein76676228366767117Rat
1562153Rps19l1ribosomal protein S19-like 17102435651102436177Rat
1587179Nemp1nuclear envelope integral membrane protein 176351402563538791Rat
1566354RGD1566354similar to Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh)78611280586113417Rat
1587369LOC299958similar to isocitrate dehydrogenase 3 (NAD+) beta79530124495302379Rat
1587370Tbc1d31TBC1 domain family, member 3178942735489506894Rat
1587371LOC299943similar to beta-catenin78869826088702180Rat
1587372LOC299934similar to 60S ribosomal protein L778650871986510997Rat
1564515RGD1564515similar to alpha 1B-glycoprotein79231493092318652Rat
1587375Ext1exostosin glycosyltransferase 178437576984654625Rat
1585982LOC679606similar to R3H domain-containing protein 27101184273101187188Rat
1561030DeptorDEP domain containing MTOR-interacting protein78651485986668817Rat
1564548RGD1564548similar to H3 histone, family 3B7100253160100257870Rat
1561749Dscc1DNA replication and sister chromatid cohesion 178648258886498212Rat
1565789Slc25a32solute carrier family 25 member 3277014295870160726Rat
1565117RGD1565117similar to 40S ribosomal protein S2676298168762982757Rat
1561255Lrig3leucine-rich repeats and immunoglobulin-like domains 376181631361866275Rat
1564420Washc5WASH complex subunit 579088433390936118Rat
1562739RGD1562739similar to STELLA79040283290404317Rat
1566279Tmem74transmembrane protein 7477492928674937973Rat
1562236Lratd2LRAT domain containing 279237671392387045Rat
1562536LOC500845LRRG0013175995394059969343Rat
1565493Rgs22regulator of G-protein signaling 2276718853167308805Rat
1565606Fam83afamily with sequence similarity 83, member A78952282689547284Rat
1582945LOC688962similar to ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)77790689177908547Rat
1564335Sybusyntabulin77584700075948919Rat
1566181Dtx3deltex E3 ubiquitin ligase 376301376963018431Rat
1588587Atp23ATP23 metallopeptidase and ATP synthase assembly factor homolog76271475262729893Rat
1591678LOC681724similar to 40S ribosomal protein S1776523948265239890Rat
1585145Tatdn1TatD DNase domain containing 179045102590481000Rat
1564131RGD1564131similar to solute carrier family 25, member 578880321988804706Rat
1590540Erich5glutamate-rich 576565582965682221Rat
1590688Marchf9membrane associated ring-CH-type finger 976287901762882495Rat
1583261LOC685039similar to LIM motif-containing protein kinase 2 isoform b76404610364047200Rat
1586304Fam91a1family with sequence similarity 91, member A178996955890007546Rat
1583275Esco2-ps1establishment of cohesion 1 homolog 2 (S. cerevisiae), pseudogene 176394820763951641Rat
1590711Eef1akmt3EEF1A lysine methyltransferase 376285330462864558Rat
1584048LOC690120hypothetical protein LOC69012079120524991206171Rat
1589002LOC685884similar to poly (A) polymerase beta (testis specific)76927543269276655Rat
1593441Oc90otoconin 9079763589097669416Rat
1591667LOC681736similar to Glycolipid transfer protein (GLTP)76524160465244954Rat
1594530Csmd3CUB and Sushi multiple domains 377874732280066466Rat
1594489LOC366931similar to protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform78425782784259665Rat
1594490LOC366929similar to 40S ribosomal protein S3a (V-fos transformation effector protein)78341236983413165Rat
1594491LOC366928similar to 40S ribosomal protein S1678321863783219115Rat
1594492LOC366923similar to mortality factor 4 like 177452741274528663Rat
1594493LOC366922similar to keratin complex 1, acidic, gene 1877346695373469075Rat
1598068LOC681203similar to peptidylprolyl isomerase D76327886463280213Rat
1594529Rad21RAD21 cohesin complex component78328786783314810Rat
1592251LOC690713similar to Huntingtin interacting protein K79941289599413276Rat
1594487LOC366944similar to heat shock protein 879690175996904484Rat
1594488LOC366933similar to proteasome (prosome, macropain) subunit, beta type 778528695685287689Rat
1594370LOC500881similar to nucleolar protein 179944663599449266Rat
1589429Tafa2TAFA chemokine like family member 275894259859418640Rat
1593414Tmem71transmembrane protein 7179827697598323161Rat
1594788LOC689264similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)78393317183934513Rat
1593036Mettl1methyltransferase like 176286481662869202Rat
1593058TsfmTs translation elongation factor, mitochondrial76282899762864784Rat
1598175LOC503156similar to Proteasome subunit beta type 3 (Proteasome theta chain) (Proteasome chain 13) (Proteasome component C10-II)79670657996707280Rat
1598176LOC503152similar to eukaryotic translation initiation factor 4B77872178978723699Rat
1597752LOC685130similar to tumor protein, translationally-controlled 176512195965122559Rat
1597486LOC689000similar to DJ-1 protein76270611562706995Rat
1596439Eny2ENY2, transcription and export complex 2 subunit77558121575605903Rat
2318573LOC100362212zinc finger, CCHC domain containing 10-like77127388271276787Rat
2319209Ctdsp2CTD small phosphatase 276280540062825306Rat
2319895Polr2kRNA polymerase II, I and III subunit K76734711867359466Rat
2318153LOC100362435coenzyme Q4 homolog (yeast)-like76295901462959701Rat
2318945LOC100362035ring finger protein 14976961601469619900Rat
2320291LOC100361374hypothetical LOC10036137476654679966550930Rat
2321290H3f3cH3 histone family member 3C78650109486502133Rat
2323224LOC100363319high mobility group nucleosomal binding domain 278352004683520312Rat
2325392Mir30bmicroRNA 30b7100132589100132675Rat
2325477Mir875microRNA 87576686195566862027Rat
2325589Mir30dmicroRNA 30d7100136391100136472Rat
2324751LOC100363139FCF1 small subunit-like7103065074103065683Rat
2324558Ndufa4l2NDUFA4, mitochondrial complex associated like 276335102163359010Rat
2324771LOC100363118hypothetical LOC10036311878014008780332987Rat
6487874LOC10091234560S ribosomal protein L13-like78755382387554447Rat
6486559LOC10091247260S ribosomal protein L37-like78943757089438522Rat
6496716Pvt1Pvt1 oncogene79365624993879938Rat
6497839LOC100910524uncharacterized LOC10091052476811051368115078Rat
6500921LOC10090991860S ribosomal protein L6-like77809812878101722Rat
7499219LOC102554106uncharacterized LOC10255410676746314367474348Rat
7525893LOC102557532uncharacterized LOC10255753276270896262710729Rat
7507053LOC102546504glyceraldehyde-3-phosphate dehydrogenase-like78581179285814750Rat
7543030LOC102548035uncharacterized LOC10254803579461920794701950Rat
7533260LOC102551999uncharacterized LOC10255199979139760591407240Rat
7520545LOC102553930elongation factor 1-alpha 1-like76322731663228116Rat
7632859LOC102550354uncharacterized LOC10255035479879959198823018Rat
7665134LOC102552316uncharacterized LOC10255231679174741291753435Rat
7637212LOC102553044growth hormone-inducible transmembrane protein-like79245969592460814Rat
7654942LOC102552637uncharacterized LOC10255263776144449561496656Rat
7655393LOC102556196uncharacterized LOC10255619677236933972427830Rat
7628604LOC102552423uncharacterized LOC10255242376149810261533554Rat
7644388LOC102553568uncharacterized LOC10255356878928907289294246Rat
7630248LOC102554030uncharacterized LOC10255403076749537167497855Rat
7570063LOC102549197uncharacterized LOC10254919776382025363826069Rat
7544233LOC102547832uncharacterized LOC10254783276318123263182934Rat
7600061Rps27a-ps10ribosomal protein S27a, pseudogene 1078945418289454719Rat
7548946LOC102548754uncharacterized LOC10254875478257677982604720Rat
7563506LOC102555324MLV-related proviral Env polyprotein-like79920971699211726Rat
7551511LOC102553429uncharacterized LOC10255342978936368589373007Rat
7567645LOC102548590uncharacterized LOC10254859078223776582247335Rat
7607396LOC102550565uncharacterized LOC10255056579925710499287329Rat
7607416LOC102550353uncharacterized LOC10255035376941872069426671Rat
7750896LOC102552490uncharacterized LOC10255249079171694691768010Rat
7751266LOC102551574uncharacterized LOC1025515747100102553100159947Rat
7695057LOC102552186uncharacterized LOC10255218676097594361088913Rat
7673256LOC102553465uncharacterized LOC10255346576600282266005251Rat
7724275LOC102549374uncharacterized LOC10254937478979212289798831Rat
7688552LOC102547251uncharacterized LOC10254725177379868273801121Rat
7683154LOC102547509uncharacterized LOC10254750979346563393487041Rat
7696807LOC102549311uncharacterized LOC10254931176888183468917953Rat
7744477LOC102555439splicing factor 1-like76778968467803388Rat
7719983LOC102548624uncharacterized LOC10254862479520888895230371Rat
7673863LOC102547184uncharacterized LOC10254718477378360673793293Rat
7709136LOC102550582uncharacterized LOC10255058276977538169783840Rat
7680464LOC102551754uncharacterized LOC10255175477865337478658701Rat
7710569LOC102549439zinc finger CCHC domain-containing protein 9-like78999776890000881Rat
9109499LOC103692934ubiquitin-conjugating enzyme E2 C pseudogene78582632585826798Rat
9196150LOC103692893uncharacterized LOC10369289377135055471411463Rat
9115372LOC103692910glyceraldehyde-3-phosphate dehydrogenase pseudogene79545070495451612Rat
9226732LOC103692908putative thymosin beta-4-like protein 677978165479781818Rat
9273439Eif3eeukaryotic translation initiation factor 3 subunit E77525736675265601Rat
9336170LOC103692875translationally-controlled tumor protein pseudogene76436642264373306Rat
9379903LOC103690428uncharacterized LOC10369042879038484590389902Rat
9295089LOC103692925uncharacterized LOC10369292579303137893285485Rat
9426508LOC103692901non-histone chromosomal protein HMG-17 pseudogene77046494570465342Rat
9388790LOC103692897anaphase-promoting complex subunit CDC26 pseudogene77346239673462806Rat
9428725LOC103692884pre-mRNA-splicing factor SPF27 pseudogene76662017466628176Rat
9394853LOC103692900histone deacetylase 1 pseudogene77893331978937424Rat
9399550LOC103692890uncharacterized LOC10369289076936902169377312Rat
9457468LOC103692916eukaryotic translation initiation factor 1 pseudogene78673517886735670Rat
11463877LOC108351485uncharacterized LOC10835148577166616071679410Rat
11465430LOC108351474glyceraldehyde-3-phosphate dehydrogenase-like76313856463142507Rat
11444634Trnak-cuu10transfer RNA lysine (anticodon CUU) 1079805030898050380Rat
11458799LOC10835149960S ribosomal protein L15 pseudogene79151969791520695Rat
11459737LOC108351622uncharacterized LOC10835162277682649976831983Rat
11437639Trnam-cau2transfer RNA methionine (anticodon CAU) 278951287089512942Rat
11452395LOC108351498uncharacterized LOC10835149879117594191181619Rat
11406708Trnap-agg8transfer RNA proline (anticodon AGG) 87103365474103365547Rat
11399049LOC108351471uncharacterized LOC10835147176268101762702138Rat
11399716LOC108351472uncharacterized LOC10835147276280038462804985Rat
11378131LOC108351495uncharacterized LOC10835149578813720988141630Rat
11477543LOC10835158260S ribosomal protein L15 pseudogene78281934482828097Rat
11479082LOC108351507uncharacterized LOC1083515077100977899100982865Rat
11511017LOC10835148240S ribosomal protein S2976929476269295070Rat
11483376LOC108351497uncharacterized LOC10835149779119165191198960Rat
11484283LOC108351490uncharacterized LOC10835149077307882973139627Rat
11486846LOC108351508uncharacterized LOC1083515087103732592103735810Rat
15008789Hhla1HERV-H LTR-associating 179767094697711308Rat
41321218LOC120094013small nucleolar RNA SNORA2678013089380131008Rat
41354571LOC120093813uncharacterized LOC12009381378954876389551517Rat
41378596LOC120093636spidroin-1-like76922441069237216Rat
41137420LOC120093650uncharacterized LOC12009365078333277383340980Rat
41167073LOC120093657uncharacterized LOC12009365778632514086332561Rat
41276452LOC120093853uncharacterized LOC12009385376649664666501457Rat
41087577LOC120093807protein NYNRIN-like76368255763684405Rat
41139740LOC120093646BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like77304476673047572Rat
41356974LOC120093943U7 small nuclear RNA78018072880180791Rat
41357363LOC120093648uncharacterized LOC12009364877613253876167127Rat
41089210LOC120093934U7 small nuclear RNA7101328875101328934Rat
41205814LOC120093678uncharacterized LOC12009367879568024995697329Rat
41205965LOC120093630ligand-dependent nuclear receptor-interacting factor 1-like76423083564237143Rat
41285670LOC120093939U7 small nuclear RNA78667199086672051Rat
41359680LOC120093628uncharacterized LOC12009362876275332662760239Rat
41090800LOC120093075retinol dehydrogenase 16-like76360472863613424Rat
41171344LOC120093976small nucleolar RNA SNORA4876588135665881494Rat
41171629LOC120093858uncharacterized LOC12009385878538125985394885Rat
41286787LOC120093871protein crumbs homolog 1-like75958331659598561Rat
41091710LOC120093932U7 small nuclear RNA78667191886671981Rat
41116471LOC120093874uncharacterized LOC12009387476575678265765252Rat
41209510LOC120093954small nucleolar RNA SNORA477299314272993230Rat
41259774LOC120093985U1 spliceosomal RNA79037444990374604Rat
41119759LOC120093658uncharacterized LOC12009365878704169787043506Rat
41147028LOC120093935U7 small nuclear RNA7102247197102247258Rat
41148025LOC120093641uncharacterized LOC12009364176971163269717802Rat
41210447LOC120093982small nucleolar RNA SNORA1778379870083798831Rat
41210892LOC120093878keratin-associated protein 10-4-like79031397690317422Rat
41211077LOC120093679uncharacterized LOC12009367979714556297197618Rat
41261377LOC120094056U6 spliceosomal RNA79206798292068087Rat
41261583LOC120094040U4 spliceosomal RNA76741311867413276Rat
41329869LOC120093665U6 snRNA-associated Sm-like protein LSm679232238592338965Rat
41364015LOC120093852uncharacterized LOC12009385276542170165423066Rat
41389968NEWGENE_40933816transfer RNA valine (anticodon AAC)7103459299103459371Rat
41390682LOC120093969small nucleolar RNA SNORA4879682511896825259Rat
41120258LOC120093645uncharacterized LOC12009364577220278972209408Rat
41211778LOC120094034U2 spliceosomal RNA77340216173402292Rat
41391265LOC120093637uncharacterized LOC12009363776928419369332561Rat
41391831LOC120093673uncharacterized LOC12009367379331604693325937Rat
41188976LOC120093644uncharacterized LOC12009364477208651072087989Rat
41189194LOC120093889uncharacterized LOC1200938897101218098101248598Rat
41190574LOC120093653cytochrome c oxidase assembly factor 6 homolog78473402184744492Rat
41366091LOC120093668uncharacterized LOC12009366879286029092892964Rat
41393725LOC120093914U6 spliceosomal RNA79169334391693442Rat
41098039LOC120093624uncharacterized LOC12009362475952784359540971Rat
41122073LOC120093642uncharacterized LOC12009364277103645371041241Rat
41368912LOC120093660uncharacterized LOC12009366079004013990048215Rat
41099658LOC120093877nucleolar and spindle-associated protein 1-like78889526888898116Rat
41101397LOC12009387660S ribosomal protein L29-like76865036068650662Rat
41181863LOC120094047U6 spliceosomal RNA77266649772666603Rat
41192745LOC120094055U6 spliceosomal RNA76444494264445048Rat
41193271LOC120093937U7 small nuclear RNA78968648889686549Rat
41396341LOC120093649uncharacterized LOC12009364978202511382045293Rat
41126079LOC120093643uncharacterized LOC12009364377175546871761836Rat
41157576LOC120093667uncharacterized LOC12009366779261620892664552Rat
41157951LOC120093933U7 small nuclear RNA77403049474030556Rat
41182468LOC120093634uncharacterized LOC12009363476900814269032204Rat
41182883LOC120093916U6 spliceosomal RNA76517002665170131Rat
41183437LOC120093855glyceraldehyde-3-phosphate dehydrogenase-like77021857670220530Rat
41371502LOC120093806retinol dehydrogenase 7-like76359739663600224Rat
41070538LOC120093670uncharacterized LOC12009367079299943793076507Rat
41102902NEWGENE_6576126transfer RNA lysine (anticodon CUU)78734897787349051Rat
41348715LOC120093805uncharacterized LOC12009380576344527163453892Rat
41348804LOC120093652glyceraldehyde-3-phosphate dehydrogenase-like78474473684746963Rat
41372429LOC120093812uncharacterized LOC12009381277936796079387528Rat
41398940LOC120093635uncharacterized LOC12009363576901649569041792Rat
41104726LOC120093973small nucleolar RNA SNORA4877610616776106298Rat
41375035LOC120093987small nucleolar RNA SNORA1775967884959678980Rat
41400961LOC120093860phosphomannomutase 1-like79348989393490745Rat
41130380LOC120094049U6 spliceosomal RNA77497115674971262Rat
41375551LOC120094019U6atac minor spliceosomal RNA79424665794246771Rat
41402332LOC120093856uncharacterized LOC12009385677690252176906097Rat
41108340LOC120093859phosphoglycerate mutase 1-like79148702691487671Rat
41164982LOC120093811uncharacterized LOC12009381177903590179060192Rat
41084824LOC120094006small nucleolar RNA SNORA1777551134175511466Rat
41108830LOC120094009small nucleolar RNA SNORA1779445709694457229Rat
41109545LOC120093873retinol dehydrogenase 16-like76362868663638448Rat
41110337LOC120093662uncharacterized LOC12009366279054245290549865Rat
40946632LOC120093991small nucleolar RNA SNORA1777899559678995719Rat
40947210LOC120094048U6 spliceosomal RNA77323317873233284Rat
41339457LOC120093676uncharacterized LOC12009367679569740995701254Rat
41339717LOC120093659uncharacterized LOC12009365978903345189129176Rat
40952871LOC120093870basic proline-rich protein-like75944207559443292Rat
40975977LOC120093671uncharacterized LOC12009367179323832593252519Rat
40954004LOC120093638uncharacterized LOC12009363876933262569335534Rat
40928179LOC120093680uncharacterized LOC1200936807100100814100116285Rat
40928360LOC1200938965S ribosomal RNA76384051063840625Rat
40980018LOC120093857uncharacterized LOC12009385778064606280652572Rat
41001841LOC120093944small nucleolar RNA SNORA7276564875865648889Rat
40931067LOC120093669chorion-specific transcription factor GCMa-like79326131793262492Rat
40931729LOC120094038small nucleolar RNA U37104110727104110918Rat
40982949LOC120093854ferritin light chain 1-like76830712868307785Rat
40959783LOC120093675uncharacterized LOC12009367579451391194565757Rat
40934539LOC120093664uncharacterized LOC12009366479142761691449462Rat
40985792LOC120093906U6 spliceosomal RNA78917736789177472Rat
40986003LOC120093655uncharacterized LOC12009365578492961684938592Rat
40988719LOC120093981small nucleolar RNA SNORA1776268242462682554Rat
41009218LOC120093661uncharacterized LOC12009366179037339690375705Rat
40939062LOC120093810uncharacterized LOC12009381077287488672890974Rat
40939206LOC120093872ferritin light chain 1-like76082544560837640Rat
40939488LOC120093632nucleus accumbens-associated protein 1-like76858832768589999Rat
40939717LOC120093970small nucleolar RNA SNORA4878612446586124606Rat
40964218LOC120093927U6 spliceosomal RNA76573366365733772Rat
40991499LOC120093633uncharacterized LOC12009363376891795168929768Rat
40991943LOC120093626uncharacterized LOC12009362676193670861940112Rat
40943775LOC120093986small nucleolar RNA SNORA1778491957684919697Rat
41075389LOC120093627uncharacterized LOC12009362776262278762636248Rat
41311443LOC120093988small nucleolar RNA SNORA1779227354192273672Rat
41311683LOC120093875L-lactate dehydrogenase A chain-like76747783267482843Rat
41311854LOC120094008small nucleolar RNA SNORA177101325223101325349Rat
41313047LOC120094010small nucleolar RNA SNORA1777304414473044260Rat
41050819LOC120093918U6 spliceosomal RNA78379568283795784Rat
41028520LOC120093882non-histone chromosomal protein HMG-17-like7103596895103602401Rat
41079558LOC120094031U2 spliceosomal RNA77606916476069307Rat
41319180LOC120094042U4 spliceosomal RNA77474469274744827Rat
41319479LOC120093814uncharacterized LOC12009381478985043489854677Rat
41029905LOC120093640uncharacterized LOC12009364076968646069696731Rat
41030570LOC120093672uncharacterized LOC12009367279309324193096469Rat
41135575LOC120093651uncharacterized LOC12009365178372558483732362Rat
41255602LOC120094033U2 spliceosomal RNA77111313671113342Rat
41144591LOC120093677uncharacterized LOC12009367779570190295705551Rat
41335646LOC12009365440S ribosomal protein S25-like78515594385156357Rat
41336226LOC120094027U2 spliceosomal RNA79839917098399344Rat
41031164LOC120093656uncharacterized LOC12009365678483629384870077Rat
41297372LOC120093974U1 spliceosomal RNA76735160467351766Rat
41031770LOC120093966small nucleolar RNA SNORA4877077971470779856Rat
41033239LOC120093647uncharacterized LOC12009364777402493774062258Rat
41057908LOC120093881TOX high mobility group box family member 4-like7100628756100635603Rat
41222771LOC120093879keratin-associated protein 5-3-like79208875792089368Rat
41222853LOC120093625uncharacterized LOC12009362576107541061098225Rat
41223171LOC120093629uncharacterized LOC12009362976298519462988962Rat
41223521LOC120094032U2 spliceosomal RNA78378336083783437Rat
41034435NEWGENE_6576114transfer RNA threonine (anticodon AGU)76256550262565574Rat
41034532LOC120093639uncharacterized LOC12009363976957421069584354Rat
41336997LOC120094054U6 spliceosomal RNA79336014193360247Rat
41061388LOC120094004small nucleolar RNA SNORA1777008958370089747Rat
41062197LOC120094018U1 spliceosomal RNA78563665085636794Rat
41225766LOC120093808retinol dehydrogenase 7-like76365723663657675Rat
41226631LOC120093957small nucleolar RNA SNORA2876564737865647501Rat
41226657LOC120093674uncharacterized LOC12009367479377016193787074Rat
41035867LOC120094053U6 spliceosomal RNA79137067191370777Rat
41063713LOC120093663uncharacterized LOC12009366379124652491351728Rat
41303428LOC120093804uncharacterized LOC12009380476319268763199370Rat
41066261LOC120093880geranylgeranyl transferase type-2 subunit alpha-like79824576698274427Rat
41236297LOC120093631uncharacterized LOC12009363176578842665790438Rat
41018428LOC120094017small nucleolar RNA SNORA1178969178289691908Rat
41018571LOC12009380960S ribosomal protein L31-like77263215572632554Rat
41067915LOC120093917U6 spliceosomal RNA76323651363236622Rat
41069368LOC120093888calmodulin-1-like7100467800100468244Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10935D7Wox1412779359564793595780Ratregion
10936D7Arb579359562793595833Ratregion
10937D7Wox1515579359562093595781Ratregion
10938D7Wox2913579359563393595754Ratregion
10939D7Mit2720679359563193595843Ratregion
33969D7Mit422379481108594811326Ratregion
34172D7Mgh1221776775960667759823Ratregion
34499D7Mgh714276973622669736356Ratregion
34555D7Mgh614079141244491412594Ratregion
34713D7Mgh1614079125631191256547Ratregion
33648D7Mit514178022129980221436Ratregion
33749D7Mit325679973595699736220Ratregion
36015D7Rat2115579128113091281285Ratregion
37374D7Rat992057104237839104238038Ratregion
35180D7Rat4317076173665261736830Ratregion
35264D7Rat1815279801139698011544Ratregion
36932D7Rat1713579479587794796025Ratregion
37144D7Rat7414077382920473829340Ratregion
37642D7Rat11222878519688685197132Ratregion
37710D7Rat19018479032403890324226Ratregion
37808D7Rat8612278315339283153512Ratregion
37814D7Rat1002137100865992100866189Ratregion
37838D7Rat7513376377335763773500Ratregion
37838D7Rat7513376376898163769114Ratregion
36442D7Rat2015778986737689867533Ratregion
36661D7Rat151717101772987101773158Ratregion
34999D7Rat4416276200445262004598Ratregion
35110D7Rat1417879609007796090246Ratregion
35749D7Rat4517476390260863902784Ratregion
35787D7Rat4217478400154684001720Ratregion
35841D7Rat1917679324212393242280Ratregion
35845D7Rat161407102920123102920263Ratregion
35919D7Rat2323277015132670151553Ratregion
39702D7Rat16011979350828593508404Ratregion
39830D7Rat16324676503798665038228Ratregion
39938D7Rat14111778359195383592070Ratregion
38198D7Rat6923076046045260460686Ratregion
38606D7Rat11023776908995769090184Ratregion
40036D7Rat1371757100005580100005753Ratregion
40068D7Rat16117578400599684006171Ratregion
40116D7Rat16229378255597082556263Ratregion
40164D7Rat16413476528724765287381Ratregion
40348D7Rat14016278989811689898272Ratregion
38886D7Rat962077102322484102322685Ratregion
39058D7Rat532197100874472100874685Ratregion
39464D7Rat1382007102714177102714575Ratregion
39464D7Rat1382007102714177102714373Ratregion
39468D7Rat1591087100963583100963703Ratregion
39480D7Rat16521776572863465728867Ratregion
42209D7Arb1319379747473097474932Ratregion
42213D7Arb1522179141238991412612Ratregion
42832D7Rat17711077464769674647800Ratregion
42833D7Rat20622977084011870840342Ratregion
42834D7Rat20414877278133272781484Ratregion
42836D7Rat20220279113987691140102Ratregion
41186D7Rat13918078492790684928080Ratregion
42340D7Rat23014676329436763294498Ratregion
42342D7Rat23116479075610990756271Ratregion
42343D7Rat21824979588575695886004Ratregion
40784D7Rat1351477102297359102297520Ratregion
40862D7Rat14511876129036361290481Ratregion
40900D7Rat13422979841863998418864Ratregion
40966D7Rat1331537103945484103945643Ratregion
41078D7Rat14412676814380968143931Ratregion
41130D7Rat1362047102228765102228945Ratregion
41558D7Rat14212577178896371789091Ratregion
44214D7Got7729476803272468033020Ratregion
44268D7Got6819577348064173480838Ratregion
44269D7Got5413978004228280042419Ratregion
44270D7Got6619877056640670566604Ratregion
44271D6Got19022977027953470279763Ratregion
44272D7Got5815978337455083374709Ratregion
44273D7Got5913978394715283947291Ratregion
44274D7Got6124578528769785287942Ratregion
44275D7Got6022578591358585913810Ratregion
44275D7Got6022578591358585913810Ratregion
44277D7Got6920678878793388788139Ratregion
44278D7Got15021378696127186961484Ratregion
44279D7Got6714278891620788916351Ratregion
44282D7Got7817079844989898450068Ratregion
44283D7Got851437100006584100006727Ratregion
44284D7Got8123579796087097961107Ratregion
44285D7Got822377100749587100749814Ratregion
44286D7Got861497101283261101283410Ratregion
44288D7Got7520279273463492734836Ratregion
44289D7Got7211879083629190836410Ratregion
44290D7Got7320779099577390995980Ratregion
44292D7Got7120179130026791300468Ratregion
44296D7Got892017102714262102714318Ratregion
44296D7Got892017102714117102714575Ratregion
44296D7Got892017102714117102714318Ratregion
44298D7Got901737103523502103523675Ratregion
44299D7Got882187102969204102969422Ratregion
44302D7Got871227102741501102741611Ratregion
60577D7Got5029777742997177430267Ratregion
60578D7Got5114277767110877671250Ratregion
60579D7Got5218777247471072474897Ratregion
60582D7Got5617977460763574607814Ratregion
60584D7Got6224278641483086415072Ratregion
60586D7Got6429978797287187973170Ratregion
60589D7Got7019079631961696319806Ratregion
60590D7Got7918379992957099929753Ratregion
60818D7Wox2813178915715689157281Ratregion
60819D7Wox319176400245764002648Ratregion
67821D7Uwm1216578111622981116402Ratregion
67824D7Uwm1314778519875985198911Ratregion
67826D7Uwm1412377591180475911927Ratregion
67828D7Uwm1527878855769688557979Ratregion
67829D7Uwm1618478974027389740457Ratregion
67830D7Uwm1724778979838889798645Ratregion
625818D7Got5720578095578480955989Ratregion
62494D7Uia12987103146217103146515Ratregion
66379D7Uia539176137158761371978Ratregion
629616D7Hmgc316878556775485567922Ratregion
66593D7Mco120179973598299736187Ratregion
1631140D7Got21014476247463062474774Ratregion
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1630048D7M6Mit12322476548435465484578Ratregion
1638745D7Got25921379173768291737895Ratregion
1638909D7Wox4221179125631191256522Ratregion
1641372D7Got2089776015611560156212Ratregion
1641727D7Got26125276809330568093496Ratregion
1641727D7Got26125276809324968093496Ratregion
1639772D7Got25513776900984969009986Ratregion
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1640041D7Got25823376695141366951646Ratregion
1640347D7Wox3431777325270273253019Ratregion
1640598D7Got25225676090697860907234Ratregion
1635099D14Got14710076409441164094511Ratregion
1635099D14Got14710076409441164094511Ratregion
1637797D7Got23223176257861262578840Ratregion
1638459D7Got26014776991355069913699Ratregion
1633940D7Got21315476891729568917449Ratregion
1633988D7Got24615776775960767759764Ratregion
1634664D7Got22222077117423871174473Ratregion
1634664D7Got22222077117423871174457Ratregion
7206392UniSTS:23434926976861256268612831Ratregion
7205768UniSTS:22471215578730177787301932Ratregion
7205998Avil11376282963662831041Ratregion
7193132MYC29079359646193597750Ratregion
7192370Nov10478609443686095889Ratregion
7192489Myc28079359599893596278Ratregion
7205758stSG6244665587101076225101076783Ratregion
7206730stSG60748507101954033101954302Ratregion
7206730stSG60748507101953998101954302Ratregion
7206062Azin137076965806369659554Ratregion
7206466Trps170078209987482100574Ratregion
7206488UniSTS:54663289979666502896665927Ratregion
5035939PMC314332P139478811579588116189Ratregion
5036141D10Wsu93e25176310766163107912Ratregion
5038986RH12744719477082273870822932Ratregion
5036290Ext114378437676484376907Ratregion
5039172RH12755320876291735262917560Ratregion
5036490Sla9679853618598536281Ratregion
5036609AU04858517676172405261724228Ratregion
5036863AU04944616677550589275506062Ratregion
5035502AI22972016778336842583368592Ratregion
5035506EST3C713079045021790450347Ratregion
5035508EST4E911376914672069146833Ratregion
5035669D8S158023877075636470756602Ratregion
5031306PMC133987P134976336376763364116Ratregion
5028647RH12578112076335916063359280Ratregion
5028719WI-2018425276605321266053464Ratregion
5028721A001V4510776965609769656204Ratregion
5031392PMC156147P114379359589493596037Ratregion
5034049RH14116618676901530469015489Ratregion
5034131RH14148018078950667689506856Ratregion
5026172RH131190078474399484744223Ratregion
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5028905RH14277026779102333191023598Ratregion
5026320RH13176018376536390765364090Ratregion
5031792AU04713125378518351985183774Ratregion
5034392WI-927411776965546169655578Ratregion
5029229RH14400528277539297375393255Ratregion
5026730RH13331818878620255786202745Ratregion
5029255RH14410220276600297166003173Ratregion
5029331RH14439112376381427263814395Ratregion
5032082D15Mit18317678659185586592031Ratregion
5032175RH12614520776911686069117067Ratregion
5032189RH12636420376300245163002654Ratregion
5034748BF4180639777888964178889738Ratregion
5029488AI50193721575941814159418356Ratregion
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5503061Ctnnb137778869949688699873Ratregion
5503082Nov12278609427886094400Ratregion
5503360D4Mon418979686241696862505Ratregion
5507513ECD1222555078465396084654510Ratregion
5507515ECD1283052978465454884655077Ratregion
5503224UniSTS:23729731978940562489405943Ratregion
5503228UniSTS:23730420879238638092386588Ratregion
5503892Hsh22378811577188115994Ratregion
5504196UniSTS:25969387876315882863159707Ratregion
5507680Hspa893179690178296902713Ratregion
5503664UniSTS:46547840376315709963157502Ratregion
5504466PMC212738P37176288692062887122Ratregion
5504630PMC316637P226677378368873783954Ratregion
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5505239Shmt27076336127963361349Ratregion
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5505306Ppp2r1b39178425913984259515Ratregion
5505514DXS1232076070644760707416Ratregion
5506064UniSTS:49826441077790644777906856Ratregion
5506076UniSTS:49830023478393359083933824Ratregion
5506145Angpt117977378360973783788Ratregion
5506987fd54e08.x1116879031757790318746Ratregion
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5507091UniSTS:224451076349766363497833Ratregion
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5500165D16Mit7544976700790767007946Ratregion
5500230AI84882913977094113870941277Ratregion
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5503540ODF1__610353476938912369389657Ratregion
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5501556G1598712179359590393596024Ratregion
5505165Trib124879121390691214154Ratregion
5501371STS-Z4144165978550317385503832Ratregion
5501710MYC20479359620293596406Ratregion
5501734MARC_10159-10160:996678914:110076564149265641903Ratregion
5506033UniSTS:49822942479578811895788542Ratregion
5502048MARC_26128-26129:1030370563:115679530195395302102Ratregion
55027409STS0113976816766068167799Ratregion
5502427RH12481212076536314365363263Ratregion
5502641RH12612320576816607868166283Ratregion
5502895Kif5a170076305662163058321Ratregion
Position Markers

Flank 1: (D7Rat24)
Rat AssemblyChrPosition (strand)Source
Celera766,281,598 - 66,281,749UniSTS
RH 3.4 Map7638.8RGD
RH 3.4 Map7638.8UniSTS
SHRSP x BN Map744.39UniSTS
SHRSP x BN Map744.39RGD
FHH x ACI Map734.52RGD
Cytogenetic Map7q22UniSTS
Flank 2: (D7Rat99)
Rat AssemblyChrPosition (strand)Source
mRatBN7.27104,237,839 - 104,238,038 (+)MAPPER
Rnor_6.07113,518,262 - 113,518,460NCBI
Rnor_5.07113,456,474 - 113,456,672UniSTS
RGSC_v3.47110,025,175 - 110,025,373UniSTS
Celera7100,657,078 - 100,657,276UniSTS
RH 3.4 Map1703.2UniSTS
RH 3.4 Map1703.2RGD
RH 2.0 Map1441.1RGD
SHRSP x BN Map760.22RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72673740163902784Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
61435Cia4Collagen induced arthritis QTL 45.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)75811322462004598Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)77084011872474897Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)77084011872474897Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78022129993595843Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78022129994811326Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
10450828Scl79Serum cholesterol level QTL 793.50.001blood HDL cholesterol amount (VT:0000184)blood low density lipoprotein cholesterol level (CMO:0000053)789867376101773158Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
1331723Bw25Body weight QTL 253.348body mass (VT:0001259)body weight (CMO:0000012)79324212394811326Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)793595647106839474Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)799736187103146217Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general software used: MapQTL software, Student's t-tests, median tests 2316974
qtl_general inducing agent: peptidoglycan-polysaccharide (PG-PS) polymers 2316974
qtl_general measurement method: animals were anesthetized, intestines exposed and 0.05 mL PG-PS suspension was injected; after 24 days these animals were exsanguinated and joint diameter of the right rear ankle measured on 21st day of the treatment 2316974
qtl_general number of animals used: 168 F2 females 2316974
qtl_general on day 24 LOD=2.09 2316974