Asap1 (ArfGAP with SH3 domain, ankyrin repeat and PH domain 1) - Rat Genome Database

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Gene: Asap1 (ArfGAP with SH3 domain, ankyrin repeat and PH domain 1) Rattus norvegicus
Analyze
Symbol: Asap1
Name: ArfGAP with SH3 domain, ankyrin repeat and PH domain 1
RGD ID: 1307379
Description: Predicted to enable GTPase activator activity; SH3 domain binding activity; and phospholipid binding activity. Predicted to be involved in cilium assembly; positive regulation of membrane tubulation; and positive regulation of podosome assembly. Predicted to act upstream of or within negative regulation of dendritic spine development. Predicted to be located in dendritic spine. Predicted to be active in cell projection membrane; cytosol; and podosome. Orthologous to human ASAP1 (ArfGAP with SH3 domain, ankyrin repeat and PH domain 1); PARTICIPATES IN Arf family mediated signaling pathway; endocytosis pathway; Fc gamma receptor mediated signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; all-trans-retinoic acid.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 130 kDa phosphatidylinositol 4,5-biphosphate-dependent ARF1 GTPase-activating protein; 130 kDa phosphatidylinositol 4,5-bisphosphate-dependent ARF1 GTPase-activating protein; ADP-ribosylation factor-directed GTPase-activating protein 1; ARF GTPase-activating protein 1; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1; Ddef1; DEF-1; development and differentiation enhancing; development and differentiation enhancing factor 1; development and differentiation-enhancing factor 1; differentiation-enhancing factor 1; LOC314961; PIP2-dependent ARF1 GAP
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2795,786,130 - 96,093,111 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl795,787,818 - 96,092,754 (-)Ensembl
Rnor_6.07104,670,076 - 104,951,090 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7104,669,672 - 104,801,045 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0791,673,052 - 91,955,738 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47101,303,973 - 101,575,856 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17101,337,297 - 101,575,548 (-)NCBI
Celera792,385,527 - 92,648,016 (-)NCBICelera
Cytogenetic Map7q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (EXP,ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
bazedoxifene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
carbamazepine  (ISO)
ciguatoxin CTX1B  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP,ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
isoprenaline  (ISO)
leflunomide  (ISO)
levonorgestrel  (ISO)
MeIQx  (ISO)
methyl methanesulfonate  (ISO)
nickel atom  (ISO)
oxaliplatin  (EXP)
paracetamol  (ISO)
phenol red  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
testosterone undecanoate  (ISO)
theophylline  (ISO)
toluene  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell projection membrane  (IBA,ISO)
cytoplasm  (IEA)
cytosol  (ISO)
dendritic spine  (IEA,ISO)
plasma membrane  (ISO)
podosome  (IBA,IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:9819391   PMID:10734117   PMID:16431365   PMID:17893324   PMID:20154719   PMID:20393563   PMID:21352810   PMID:23050017   PMID:25468996  


Genomics

Comparative Map Data
Asap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2795,786,130 - 96,093,111 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl795,787,818 - 96,092,754 (-)Ensembl
Rnor_6.07104,670,076 - 104,951,090 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7104,669,672 - 104,801,045 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0791,673,052 - 91,955,738 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47101,303,973 - 101,575,856 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17101,337,297 - 101,575,548 (-)NCBI
Celera792,385,527 - 92,648,016 (-)NCBICelera
Cytogenetic Map7q33NCBI
ASAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388130,052,104 - 130,443,674 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl8130,052,104 - 130,443,674 (-)EnsemblGRCh38hg38GRCh38
GRCh378131,064,350 - 131,455,920 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368131,133,535 - 131,483,399 (-)NCBINCBI36hg18NCBI36
Build 348131,133,534 - 131,483,399NCBI
Celera8127,244,326 - 127,594,327 (-)NCBI
Cytogenetic Map8q24.21-q24.22NCBI
HuRef8126,384,999 - 126,734,847 (-)NCBIHuRef
CHM1_18131,103,607 - 131,496,464 (-)NCBICHM1_1
Asap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391563,958,689 - 64,254,922 (-)NCBIGRCm39mm39
GRCm39 Ensembl1563,958,706 - 64,254,768 (-)Ensembl
GRCm381564,086,840 - 64,382,941 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1564,086,857 - 64,382,919 (-)EnsemblGRCm38mm10GRCm38
MGSCv371563,920,101 - 64,214,481 (-)NCBIGRCm37mm9NCBIm37
MGSCv361563,918,212 - 64,212,592 (-)NCBImm8
Celera1565,591,405 - 65,885,771 (-)NCBICelera
Cytogenetic Map15D1NCBI
Asap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554614,811,069 - 5,133,257 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554614,813,228 - 5,083,548 (-)NCBIChiLan1.0ChiLan1.0
ASAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18129,420,586 - 130,028,270 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8129,418,796 - 130,021,261 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v08126,688,608 - 127,080,662 (-)NCBIMhudiblu_PPA_v0panPan3
ASAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11327,111,785 - 27,468,476 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1327,113,994 - 27,430,758 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1327,078,250 - 27,434,794 (-)NCBI
ROS_Cfam_1.01327,456,229 - 27,813,403 (-)NCBI
ROS_Cfam_1.0 Ensembl1327,456,243 - 27,813,396 (-)Ensembl
UMICH_Zoey_3.11327,172,486 - 27,529,425 (-)NCBI
UNSW_CanFamBas_1.01327,291,577 - 27,648,950 (-)NCBI
UU_Cfam_GSD_1.01327,593,113 - 27,950,475 (-)NCBI
Asap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530310,913,682 - 11,214,295 (+)NCBI
SpeTri2.0NW_00493647018,340,120 - 18,640,396 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl410,140,124 - 10,451,929 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1410,103,860 - 10,451,928 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2410,385,433 - 10,423,543 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18124,515,274 - 124,912,076 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl8124,514,210 - 124,869,668 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603915,203,778 - 15,599,896 (+)NCBIVero_WHO_p1.0
Asap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473525,410,002 - 25,732,847 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D7Rat14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2796,090,077 - 96,090,246 (+)MAPPERmRatBN7.2
Rnor_6.07104,982,653 - 104,982,821NCBIRnor6.0
Rnor_5.0791,988,027 - 91,988,195UniSTSRnor5.0
RGSC_v3.47101,619,417 - 101,619,586RGDRGSC3.4
RGSC_v3.47101,619,418 - 101,619,586UniSTSRGSC3.4
RGSC_v3.17101,653,648 - 101,653,816RGD
Celera792,679,755 - 92,679,923UniSTS
RH 3.4 Map7663.3UniSTS
RH 3.4 Map7663.3RGD
RH 2.0 Map7525.0RGD
SHRSP x BN Map757.9199RGD
Cytogenetic Map7q33UniSTS
D7Rat218  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2795,885,756 - 95,886,004 (+)MAPPERmRatBN7.2
Rnor_6.07104,767,076 - 104,767,323NCBIRnor6.0
Rnor_5.0791,770,089 - 91,770,336UniSTSRnor5.0
RGSC_v3.47101,402,078 - 101,402,326RGDRGSC3.4
RGSC_v3.47101,402,079 - 101,402,326UniSTSRGSC3.4
RGSC_v3.17101,436,308 - 101,436,556RGD
Celera792,482,546 - 92,482,793UniSTS
FHH x ACI Map746.7RGD
FHH x ACI Map746.7UniSTS
Cytogenetic Map7q33UniSTS
RH131168  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2795,787,900 - 95,788,093 (+)MAPPERmRatBN7.2
Rnor_6.07104,669,256 - 104,669,448NCBIRnor6.0
Rnor_5.0791,672,232 - 91,672,424UniSTSRnor5.0
RGSC_v3.47101,303,153 - 101,303,345UniSTSRGSC3.4
Celera792,384,707 - 92,384,899UniSTS
RH 3.4 Map7658.2UniSTS
Cytogenetic Map7q33UniSTS
BF406006  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2795,879,516 - 95,879,721 (+)MAPPERmRatBN7.2
Rnor_6.07104,760,836 - 104,761,040NCBIRnor6.0
Rnor_5.0791,763,849 - 91,764,053UniSTSRnor5.0
RGSC_v3.47101,395,839 - 101,396,043UniSTSRGSC3.4
Celera792,476,306 - 92,476,510UniSTS
RH 3.4 Map7659.0UniSTS
Cytogenetic Map7q33UniSTS
AU047703  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2796,027,924 - 96,028,001 (+)MAPPERmRatBN7.2
Rnor_6.07104,920,167 - 104,920,244NCBIRnor6.0
Rnor_6.07104,920,081 - 104,920,244NCBIRnor6.0
Rnor_5.0791,924,037 - 91,924,200UniSTSRnor5.0
Rnor_5.0791,924,123 - 91,924,200UniSTSRnor5.0
RGSC_v3.47101,545,072 - 101,545,153UniSTSRGSC3.4
RGSC_v3.47101,544,986 - 101,545,153UniSTSRGSC3.4
Cytogenetic Map7q33UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
10450828Scl79Serum cholesterol level QTL 793.50.001blood HDL cholesterol amount (VT:0000184)blood low density lipoprotein cholesterol level (CMO:0000053)789867376101773158Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)793595647106839474Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:55
Interacting mature miRNAs:62
Transcripts:ENSRNOT00000031906, ENSRNOT00000068192
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 36 22 19 22 1 1 74 26 41 11 1
Low 15 21 19 19 7 10 9 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001044245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005486632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005486633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ238622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ238623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ238624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000079524   ⟹   ENSRNOP00000070164
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl795,787,836 - 96,092,754 (-)Ensembl
Rnor_6.0 Ensembl7104,670,076 - 104,801,045 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079981   ⟹   ENSRNOP00000072909
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl795,787,836 - 96,092,691 (-)Ensembl
Rnor_6.0 Ensembl7104,669,672 - 104,749,552 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085650   ⟹   ENSRNOP00000071134
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl795,787,818 - 96,020,812 (-)Ensembl
Rnor_6.0 Ensembl7104,670,076 - 104,800,536 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094033   ⟹   ENSRNOP00000077111
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl795,787,836 - 96,020,950 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107914   ⟹   ENSRNOP00000084328
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl795,787,836 - 95,920,279 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108328   ⟹   ENSRNOP00000087244
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl795,787,818 - 96,020,812 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112210   ⟹   ENSRNOP00000080846
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl795,787,836 - 96,092,754 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117838   ⟹   ENSRNOP00000096504
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl795,789,860 - 96,058,369 (-)Ensembl
RefSeq Acc Id: NM_001044245   ⟹   NP_001037710
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,788,721 - 96,058,369 (-)NCBI
Rnor_6.07104,670,076 - 104,951,090 (-)NCBI
Rnor_5.0791,673,052 - 91,955,738 (-)NCBI
RGSC_v3.47101,303,973 - 101,575,856 (-)RGD
Celera792,385,527 - 92,648,016 (-)RGD
Sequence:
RefSeq Acc Id: XM_039079170   ⟹   XP_038935098
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,786,130 - 96,092,937 (-)NCBI
RefSeq Acc Id: XM_039079171   ⟹   XP_038935099
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,786,130 - 96,092,115 (-)NCBI
RefSeq Acc Id: XM_039079172   ⟹   XP_038935100
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,786,130 - 96,092,937 (-)NCBI
RefSeq Acc Id: XM_039079173   ⟹   XP_038935101
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,786,130 - 96,092,937 (-)NCBI
RefSeq Acc Id: XM_039079174   ⟹   XP_038935102
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,786,130 - 96,092,935 (-)NCBI
RefSeq Acc Id: XM_039079175   ⟹   XP_038935103
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,786,130 - 96,092,940 (-)NCBI
RefSeq Acc Id: XM_039079176   ⟹   XP_038935104
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,786,130 - 96,092,936 (-)NCBI
RefSeq Acc Id: XM_039079177   ⟹   XP_038935105
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,786,130 - 96,092,939 (-)NCBI
RefSeq Acc Id: XM_039079178   ⟹   XP_038935106
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,786,130 - 96,021,050 (-)NCBI
RefSeq Acc Id: XM_039079179   ⟹   XP_038935107
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,786,130 - 96,092,939 (-)NCBI
RefSeq Acc Id: XM_039079180   ⟹   XP_038935108
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,786,130 - 96,092,937 (-)NCBI
RefSeq Acc Id: XM_039079181   ⟹   XP_038935109
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,786,130 - 95,881,972 (-)NCBI
RefSeq Acc Id: XM_039079183   ⟹   XP_038935111
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,894,717 - 96,093,057 (-)NCBI
RefSeq Acc Id: XM_039079184   ⟹   XP_038935112
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,919,183 - 96,093,111 (-)NCBI
RefSeq Acc Id: XM_039079185   ⟹   XP_038935113
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,918,235 - 96,093,103 (-)NCBI
RefSeq Acc Id: XR_005486632
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,866,708 - 96,093,037 (-)NCBI
RefSeq Acc Id: XR_005486633
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2795,872,940 - 96,093,079 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001037710   ⟸   NM_001044245
- UniProtKB: Q1AAU6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070164   ⟸   ENSRNOT00000079524
RefSeq Acc Id: ENSRNOP00000071134   ⟸   ENSRNOT00000085650
RefSeq Acc Id: ENSRNOP00000072909   ⟸   ENSRNOT00000079981
RefSeq Acc Id: XP_038935103   ⟸   XM_039079175
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038935107   ⟸   XM_039079179
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038935105   ⟸   XM_039079177
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038935108   ⟸   XM_039079180
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038935101   ⟸   XM_039079173
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038935100   ⟸   XM_039079172
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038935098   ⟸   XM_039079170
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038935104   ⟸   XM_039079176
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038935102   ⟸   XM_039079174
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038935099   ⟸   XM_039079171
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038935106   ⟸   XM_039079178
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038935109   ⟸   XM_039079181
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038935111   ⟸   XM_039079183
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038935113   ⟸   XM_039079185
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038935112   ⟸   XM_039079184
- Peptide Label: isoform X13
RefSeq Acc Id: ENSRNOP00000080846   ⟸   ENSRNOT00000112210
RefSeq Acc Id: ENSRNOP00000084328   ⟸   ENSRNOT00000107914
RefSeq Acc Id: ENSRNOP00000096504   ⟸   ENSRNOT00000117838
RefSeq Acc Id: ENSRNOP00000087244   ⟸   ENSRNOT00000108328
RefSeq Acc Id: ENSRNOP00000077111   ⟸   ENSRNOT00000094033
Protein Domains
Arf-GAP   PH   SH3

Protein Structures
Name Modeller Protein Id AA Range Protein Structure Video
AF-Q1AAU6-F1-model_v2 AlphaFold Q1AAU6 1-1144 view protein structure  

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307379 AgrOrtholog
BioCyc Gene G2FUF-33141 BioCyc
Ensembl Genes ENSRNOG00000058733 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000070164 UniProtKB/TrEMBL
  ENSRNOP00000071134 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000072909 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000080846 ENTREZGENE
  ENSRNOP00000087244 ENTREZGENE
Ensembl Transcript ENSRNOT00000079524 UniProtKB/TrEMBL
  ENSRNOT00000079981 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000085650 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000108328 ENTREZGENE
  ENSRNOT00000112210 ENTREZGENE
Gene3D-CATH 1.10.220.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.1270.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARFGAP/RecO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ArfGAP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ArfGAP_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ASAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ASAP1_BAR UniProtKB/Swiss-Prot
  ASAP1_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_ASAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:314961 UniProtKB/Swiss-Prot
NCBI Gene 314961 ENTREZGENE
PANTHER PTHR45854 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ArfGap UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Asap1 PhenoGen
PRINTS REVINTRACTNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARFGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ArfGap UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57863 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JX76_RAT UniProtKB/TrEMBL
  A0A0G2JZQ0_RAT UniProtKB/TrEMBL
  A0A0G2K451_RAT UniProtKB/TrEMBL
  ASAP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q1AAU4 UniProtKB/Swiss-Prot
  Q1AAU5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-15 Asap1  ArfGAP with SH3 domain, ankyrin repeat and PH domain 1  Ddef1  development and differentiation enhancing factor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Ddef1  development and differentiation enhancing factor 1  Ddef1  development and differentiation enhancing   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ddef1  development and differentiation enhancing   Ddef1_predicted  development and differentiation enhancing (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ddef1_predicted  development and differentiation enhancing (predicted)      Symbol and Name status set to approved 70820 APPROVED