D7Mgh6 Marker Search Result - Rat Genome Database

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Marker: D7Mgh6

Symbol: D7Mgh6
Previously known as: oxsts5228; R1101-D05; 
RGD ID: 34555
Expected Size: 148 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8793,301,861 - 93,302,009 (+)Marker Load Pipeline
mRatBN7.2791,412,444 - 91,412,594 (+)MAPPERmRatBN7.2
Rnor_6.07100,160,276 - 100,160,423NCBIRnor6.0
Rnor_5.07100,740,273 - 100,740,420UniSTSRnor5.0
RGSC_v3.4796,648,985 - 96,649,132UniSTSRGSC3.4
RGSC_v3.4796,648,984 - 96,649,133RGDRGSC3.4
RGSC_v3.1796,683,214 - 96,683,363RGD
Celera788,172,992 - 88,173,139UniSTS
RH 3.4 Map7650.8RGD
RH 3.4 Map7650.8UniSTS
RH 2.0 Map7549.7RGD
SHRSP x BN Map752.31RGD
FHH x ACI Map744.59RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Hcas1   Stl17   Rf58   Pur22   Stl24  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer ACCCCAAAGACTTAAAAAATTAGC
Reverse Primer TGGCTTGTTAATCGTGACTACTG
 
Strain, Expected Size(s)

ACI/N 140 AVN/Orl 140 BBDP/Rhw 140
BBDR/Rhw 140 BC/CpbU 148 BDIX/Han 140
BDVII/Cub 140 BN-Lx/Cub 148 BN/SsNHsd 148
BP/Cub 148 BUF/Pit 140 COP/OlaHsd 148
DA/PitN 140 DON/Melb 140 F344/Pit 140
FHH/Eur 148 GH/Omr 140 GK/KyoSwe 140
IS/Kyo 140 LE/Mol 140 LEW/Pit 140
LH/Mav 140 LN/Mav 140 LOU/CHan 140
M520/N 140 MNR/N 140 MNRA/N 148
MNS/Gib 148 MR/Pit 140 NEDH/K 168
NP9 140 ODU/N 140 OKA/Wsl 140
OM/Ztm 148 P5C 140 PVG/Pit 142
SD/Rij 140 SHR/OlaHsd 140 SHRSP/Riv 140
SR/Jr 140 SS/Jr 148 WAG/RijKyo 148
WF/Pit 148 WIST/Nhg 148 WKY/OlaHsd 140
WN/N 154 WTC/Kyo 140


GenBank Nucleotide L03192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 46 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat

1 to 10 of 46 rows


Database
Acc Id
Source(s)
NCBI Gene 100381183 UniSTS
  100381186 UniSTS
  100381188 UniSTS
  369184 UniSTS
  544607 UniSTS