Iddm34 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Iddm34 (Insulin dependent diabetes mellitus QTL 34) Rattus norvegicus

Symbol: Iddm34
Name: Insulin dependent diabetes mellitus QTL 34
RGD ID: 2299163
Trait: blood glucose amount   (VT:0000188)    
Measurement Type: age at onset/diagnosis of type 1 diabetes mellitus   (CMO:0001140)    
LOD Score: 2.71
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr87116,269,196 - 132,020,414RGD_MAPPER_PIPELINE
mRatBN7.2791,281,130 - 135,012,528RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.07100,028,953 - 145,729,302RGD_MAPPER_PIPELINERnor6.0
Rnor_5.07100,609,080 - 143,501,887RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4796,517,746 - 137,757,704RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: ACI.BBDP-(RT1u)(Gimap5)/Sunn BBDP/WorSunn 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Unpublished observations for Iddm QTL Personal communication with Dr. Wallis
2. TYPE 1 DIABETES IN THE BB RAT: A POLYGENIC DISEASE. Wallis RH, etal., Diabetes. 2009 Apr;58(4):1007-17. Epub 2009 Jan 23

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
621583A4galtalpha 1,4-galactosyltransferase7116248571116272917Rat
1560066Arfgap3ARF GTPase activating protein 37116312996116359300Rat
69411Pacsin2protein kinase C and casein kinase substrate in neurons 27116385571116478609Rat
41212995LOC120093699uncharacterized LOC1200936997116478959116488529Rat
1309124Ttll1TTL family tubulin polyglutamylase complex subunit L17116499536116528833Rat
621547BikBCL2-interacting killer7116552303116571317Rat
1306698Mcatmalonyl-CoA-acyl carrier protein transacylase7116573632116585767Rat
402124689LOC134479952uncharacterized LOC1344799527116584660116587474Rat
402453011LOC134479950uncharacterized LOC1344799507116589482116599962Rat
2228Tspotranslocator protein7116600214116610461Rat
1305319Ttll12tubulin tyrosine ligase like 127116612609116631244Rat
402387345LOC134479949uncharacterized LOC1344799497116631371116642443Rat
1309015Scube1signal peptide, CUB domain and EGF like domain containing 17116639027116760986Rat
402417390LOC134479951uncharacterized LOC1344799517116752067116761878Rat
1308244Mpped1metallophosphoesterase domain containing 17116811841116891789Rat
41270848LOC120093700uncharacterized LOC1200937007116816973116822027Rat
1309065Efcab6EF-hand calcium binding domain 67116899022117085998Rat
7664573LOC102549885uncharacterized LOC1025498857116932068116937510Rat
40964737LOC120093701uncharacterized LOC1200937017117012606117013625Rat
402265049LOC134479758uncharacterized LOC1344797587117075882117077198Rat
69292Sult4a1sulfotransferase family 4A, member 17117096064117120714Rat
1307495Pnpla5patatin-like phospholipase domain containing 57117126046117137036Rat
1595843Pnpla3patatin-like phospholipase domain containing 37117173485117194065Rat
402421886LOC134479759uncharacterized LOC1344797597117196870117197322Rat
1303219Samm50SAMM50 sorting and assembly machinery component7117197460117221668Rat
1311485Parvbparvin, beta7117240238117325744Rat
41294035LOC120093972small nucleolar RNA SNORA487117334871117335011Rat
1597417Parvgparvin, gamma7117336160117366341Rat
1566029Shisal1shisa like 17117388210117491539Rat
1306472Rtl6retrotransposon Gag like 67117564780117569865Rat
1560568Btf3l6basic transcription factor 3 like 67117599716117600530Rat
41299699LOC120093900U6 spliceosomal RNA7117612475117612581Rat
1307954Prr5proline rich 57117675308117717833Rat
1303143Arhgap8Rho GTPase activating protein 87117723512117782031Rat
1308739Phf21bPHD finger protein 21B7117793643117864141Rat
3191Nup50nucleoporin 507117927882117945155Rat
1304694Kiaa0930KIAA0930 homolog7117947898117987601Rat
4888573Mir1249microRNA 12497117955517117955636Rat
402009918LOC134479760uncharacterized LOC1344797607118003121118004953Rat
1310633Upk3auroplakin 3A7118008898118019865Rat
1560783Fam118afamily with sequence similarity 118, member A7118032313118058888Rat
1308791Smc1bstructural maintenance of chromosomes 1B7118060898118122683Rat
1309033Ribc2RIB43A domain with coiled-coils 27118122722118137772Rat
41093664LOC120093910U6 spliceosomal RNA7118125477118125579Rat
41081806LOC120093908U6 spliceosomal RNA7118134492118134598Rat
402028042LOC134479609uncharacterized LOC1344796097118170282118179693Rat
1308667Fbln1fibulin 17118190347118269965Rat
40973876LOC120093703uncharacterized LOC1200937037118263267118269384Rat
41181053LOC120093704uncharacterized LOC1200937047118278217118291897Rat
621813Atxn10ataxin 107118321516118444967Rat
41280352LOC120094028U2 spliceosomal RNA7118335681118335843Rat
41328920LOC120093968small nucleolar RNA SNORA487118337213118337352Rat
1311441Wnt7bWnt family member 7B7118514684118559316Rat
41321956LOC120093705uncharacterized LOC1200937057118555578118575348Rat
7651247LOC102554082uncharacterized LOC1025540827118577898118591735Rat
402110692LOC134479761uncharacterized LOC1344797617118588729118595120Rat
2325399Mirlet7c2microRNA let7c-27118683623118683717Rat
2325607Mirlet7bmicroRNA let-7b7118684038118684122Rat
3369Pparaperoxisome proliferator activated receptor alpha7118712261118780723Rat
1306001Cdpf1cysteine rich, DPF motif domain containing 17118773497118785283Rat
1306587Pkdrejpolycystin family receptor for egg jelly7118788939118795313Rat
1306041Ttc38tetratricopeptide repeat domain 387118805115118828449Rat
1563164Gtse1G-2 and S-phase expressed 17118829793118846662Rat
1311229TrmutRNA mitochondrial 2-thiouridylase7118849586118866190Rat
1560078Celsr1cadherin, EGF LAG seven-pass G-type receptor 17118867450119004859Rat
1309983Gramd4GRAM domain containing 47119030225119103875Rat
1305019Cerkceramide kinase7119105674119149885Rat
402012113LOC134479762uncharacterized LOC1344797627119129775119130882Rat
11406985Tbc1d22alTBC1 domain family, member 22a like7119171679119172308Rat
1306588Tbc1d22aTBC1 domain family, member 22a7119172284119457271Rat
40954500LOC120093936U7 small nuclear RNA7119424429119424491Rat
402243301LOC134479764uncharacterized LOC1344797647119567385119568560Rat
402379754LOC134479763uncharacterized LOC1344797637119568559119593121Rat
402439729LOC134479765uncharacterized LOC1344797657119595025119601911Rat
402367772LOC134479766uncharacterized LOC1344797667119664715119673600Rat
11466928LOC108351625uncharacterized LOC1083516257119671124119675382Rat
1560617Nap1l6nucleosome assembly protein 1 like 67119964383119965628Rat
11498066LOC108351522uncharacterized LOC1083515227120308497120333435Rat
1562115Tafa5TAFA chemokine like family member 57120493447120714720Rat
41114013LOC120093885basic proline-rich protein-like7121379126121428609Rat
7501918LOC102546882uncharacterized LOC1025468827121430366121431479Rat
40940249LOC120093708uncharacterized LOC1200937087121543651121562876Rat
41294367LOC120093707uncharacterized LOC1200937077121554490121572301Rat
1598341Zdhhc25zinc finger, DHHC-type containing 257121572354121573586Rat
11426535LOC108351525uncharacterized LOC1083515257121637790121659235Rat
1311855Brd1bromodomain containing 17121653859121701700Rat
7529302LOC102547254uncharacterized LOC1025472547121714376121723079Rat
1305949Zbed4zinc finger, BED-type containing 47121723130121763180Rat
1304826Alg12ALG12, alpha-1,6-mannosyltransferase7121774796121789175Rat
1310614Creld2cysteine-rich with EGF-like domains 27121788754121796230Rat
40998216Trnal-aag11transfer RNA leucine (anticodon AAG) 117121819879121819951Rat
620462Pim3Pim-3 proto-oncogene, serine/threonine kinase7121822076121836257Rat
402237688LOC134479954uncharacterized LOC1344799547121856319121874278Rat
1306462Ttll8tubulin tyrosine ligase like 87121860192121926344Rat
1308552Mlc1modulator of VRAC current 17121926356121949484Rat
402244921LOC134479953uncharacterized LOC1344799537121932406121934186Rat
1304735Mov10l1Mov10 like RNA helicase 17121949743122015042Rat
735191Panx2pannexin 27122018937122032009Rat
41121851LOC120093824uncharacterized LOC1200938247122020631122028075Rat
1310875TrabdTraB domain containing7122034685122045657Rat
1311907Selenooselenoprotein O7122047555122058448Rat
1307743Tubgcp6tubulin gamma complex component 67122057328122078639Rat
1305874Hdac10histone deacetylase 107122078768122084457Rat
70975Mapk12mitogen-activated protein kinase 127122085647122096307Rat
1309340Mapk11mitogen-activated protein kinase 117122098120122105023Rat
11481295LOC108351526uncharacterized LOC1083515267122101301122104329Rat
1305495Plxnb2plexin B27122111917122138201Rat
2325613Mir349microRNA 3497122122951122123047Rat
1308012Dennd6bDENN domain containing 6B7122139159122154720Rat
1563990Ppp6r2protein phosphatase 6, regulatory subunit 27122164968122236625Rat
1307090Sbf1SET binding factor 17122237968122264591Rat
1302971Adm2adrenomedullin 27122272808122274594Rat
7556599LOC102549998uncharacterized LOC1025499987122275949122287294Rat
628739Mioxmyo-inositol oxygenase7122284660122287158Rat
41086182LOC120094050U6 spliceosomal RNA7122289364122289470Rat
1306274Lmf2lipase maturation factor 27122297971122302423Rat
1565937Ncaph2non-SMC condensin II complex, subunit H27122302550122319570Rat
1305756Tympthymidine phosphorylase7122318396122323716Rat
1564322Cimap1bciliary microtubule associated protein 1B7122323860122326921Rat
1562257Klhdc7bkelch domain containing 7B7122331708122335364Rat
1586367Syce3synaptonemal complex central element protein 37122336427122362608Rat
2397Cpt1bcarnitine palmitoyltransferase 1B7122370974122380473Rat
61826Chkbcholine kinase beta7122380592122385102Rat
402399132LOC134479955uncharacterized LOC1344799557122384040122388549Rat
402432924LOC134479956uncharacterized LOC1344799567122402797122407021Rat
1309727Mapk8ip2mitogen-activated protein kinase 8 interacting protein 27122406350122416602Rat
1310381Arsaarylsulfatase A7122422971122426971Rat
41311727LOC120093826uncharacterized LOC1200938267122430192122444986Rat
69264Shank3SH3 and multiple ankyrin repeat domains 37122448323122518623Rat
11417555LOC108351527uncharacterized LOC1083515277122514589122517736Rat
2024Acracrosin7122517910122524110Rat
1306749Rabl2RAB, member of RAS oncogene family like 27122531787122540500Rat
11407928Septin7-ps3septin 7, pseudogene 37122540385122569320Rat
2322820Rpl9-ps2ribosomal protein L9, pseudogene 27122585395122590804Rat
41306769LOC120093828uncharacterized LOC1200938287122651493122709403Rat
62041Syt10synaptotagmin 107122737301122800462Rat
41122941LOC120093709uncharacterized LOC1200937097123077397123097080Rat
708500Alg10ALG10, alpha-1,2-glucosyltransferase7123214636123225104Rat
1307939Cpne8copine 87123494864123669060Rat
402190799LOC134479767uncharacterized LOC1344797677123668854123670099Rat
1590886Pkm-ps8pyruvate kinase M1/2, pseudogene 87123812963123815307Rat
11372989LOC10835158540S ribosomal protein S19 pseudogene7123830508123835399Rat
1594485Ptbp1-ps5polypyrimidine tract binding protein 1, pseudogene 57123841621123843407Rat
1593154Aph1a-ps1aph-1 homolog A, gamma secretase subunit, pseudogene 17123922565123923585Rat
1305126Kif21akinesin family member 21A7123942079124058594Rat
402223601LOC134479768uncharacterized LOC1344797687123998803124002484Rat
11483961LOC108351528uncharacterized LOC1083515287124114714124121114Rat
69244Abcd2ATP binding cassette subfamily D member 27124142597124191202Rat
40982778LOC120093710uncharacterized LOC1200937107124163669124177410Rat
1584027Redic1regulator of DNA class I crossover intermediates 17124198034124265545Rat
621814Slc2a13solute carrier family 2 member 137124278881124606146Rat
11416329LOC108351529uncharacterized LOC1083515297124624446124706050Rat
1561168Lrrk2leucine-rich repeat kinase 27124706246124867234Rat
41322371LOC120093930U7 small nuclear RNA7124790103124790165Rat
1588759Hmgb1-ps3high mobility group box 1, pseudogene 37124830224124832753Rat
6490492Rap1b-ps4RAP1B, member of RAS oncogene family, pseudogene 47124874342124874956Rat
1302995Smgcsubmandibular gland protein C7124897424124927730Rat
1624205Muc19mucin 19, oligomeric7124897424125018582Rat
11415142LOC108351530uncharacterized LOC1083515307124919843124990354Rat
2323271Ndufs2-ps2NADH:ubiquinone oxidoreductase core subunit S2, pseudogene 27125042467125053359Rat
41075965LOC120093941U7 small nuclear RNA7125045396125045460Rat
41340613LOC120093711uncharacterized LOC1200937117125093831125106967Rat
621300Cntn1contactin 17125142638125440397Rat
402122759LOC134479769uncharacterized LOC1344797697125330721125340901Rat
402348049LOC134479771U1 small nuclear ribonucleoprotein C-like7125542758125579757Rat
1308860Pdzrn4PDZ domain containing RING finger 47125696448125844965Rat
41326720LOC120093912U6 spliceosomal RNA7125790806125790905Rat
41330851Snora3Asmall nucleolar RNA, H/ACA box 3A7125820534125820664Rat
9337028LOC103692959uncharacterized LOC1036929597125937362125964922Rat
402328463LOC134479774uncharacterized LOC1344797747125964969125966034Rat
402042708LOC134479772uncharacterized LOC1344797727125968440125969337Rat
402160961LOC134479773uncharacterized LOC1344797737125968872125993735Rat
7544728LOC102552608uncharacterized LOC1025526087126020355126060013Rat
402008596LOC134479775uncharacterized LOC1344797757126031764126048745Rat
41182499LOC120093712uncharacterized LOC1200937127126069800126086853Rat
1594484St13-ps5ST13, Hsp70 interacting protein, pseudogene 57126101825126103037Rat
402035284LOC134479770uncharacterized LOC1344797707126134651126141644Rat
402369457LOC134479776uncharacterized LOC1344797767126243655126244935Rat
7508602LOC102552792uncharacterized LOC1025527927126247948126269116Rat
402261215LOC134479777uncharacterized LOC1344797777126269040126269980Rat
1563062Gxylt1glucoside xylosyltransferase 17126280349126320803Rat
1582851Yaf2YY1 associated factor 27126323604126379061Rat
11460636LOC10835156260S ribosomal protein L30 pseudogene7126342541126353093Rat
402298733LOC134479778uncharacterized LOC1344797787126378954126386527Rat
1309851Zcrb1zinc finger CCHC-type and RNA binding motif containing 17126404675126418012Rat
1306207Pphln1periphilin 17126418042126509430Rat
11452704LOC108351532uncharacterized LOC1083515327126426966126453711Rat
735090Prickle1prickle planar cell polarity protein 17126518587126614581Rat
6493127LOC100911384uncharacterized LOC1009113847126715428126726293Rat
9232311LOC103692964uncharacterized LOC1036929647126717688126726501Rat
7600390LOC102553542uncharacterized LOC1025535427126867401126894947Rat
41203087LOC120093713uncharacterized LOC1200937137126903427126912947Rat
41102183LOC120093714uncharacterized LOC1200937147126996106127005358Rat
402276171LOC134479610uncharacterized LOC1344796107127062590127064161Rat
1307725Adamts20ADAM metallopeptidase with thrombospondin type 1 motif, 207127275538127407325Rat
402393093LOC134479779uncharacterized LOC1344797797127302501127316385Rat
11477881LOC108351538uncharacterized LOC1083515387127500441127537098Rat
11490457LOC108351537uncharacterized LOC1083515377127525865127546313Rat
1304692Pus7lpseudouridine synthase 7 like7127538785127561936Rat
1305303Irak4interleukin-1 receptor-associated kinase 47127561777127588762Rat
1586372Rpl18-ps11ribosomal protein L18, pseudogene 117127572329127573026Rat
1311872Twf1twinfilin actin-binding protein 17127595210127607821Rat
1596079Ndufb4-ps1NADH:ubiquinone oxidoreductase subunit B4, pseudogene 17127622480127622927Rat
1562562Tmem117transmembrane protein 1177127636862128098944Rat
41355695LOC120093979small nucleolar RNA SNORA177127690258127690389Rat
41021584LOC120093715uncharacterized LOC1200937157127798957127805519Rat
7623138LOC102546578uncharacterized LOC1025465787127943401127957521Rat
620999Nell2neural EGFL like 27128222333128542127Rat
402417449LOC134479780uncharacterized LOC1344797807128403318128404323Rat
40948348LOC120093716uncharacterized LOC1200937167128410514128414057Rat
41008048LOC120094043U4 spliceosomal RNA7128517550128517615Rat
40933796LOC120093922U6 spliceosomal RNA7128633069128633172Rat
1359605Dbx2developing brain homeobox 27128651603128681886Rat
1304765Ano6anoctamin 67128812842128992805Rat
7714119LOC102547300uncharacterized LOC1025473007128849553128856175Rat
402018734LOC134479558uncharacterized LOC1344795587128973970129144556Rat
402090351LOC134479557histone deacetylase 1-like7129089760129097720Rat
7647453LOC102549406uncharacterized LOC1025494067129159362129164990Rat
7691790LOC102549313uncharacterized LOC1025493137129161182129168352Rat
402313965LOC134479559uncharacterized LOC1344795597129181102129189629Rat
1594483Eif3i-ps2eukaryotic translation initiation factor 3, subunit I, pseudogene 27129206828129221277Rat
40996592LOC120093717uncharacterized LOC1200937177129210126129289721Rat
402050183LOC134479560eukaryotic translation initiation factor 3 subunit I-like7129222898129225742Rat
1311105Arid2AT-rich interaction domain 27129326371129443813Rat
1598325Scaf11SR-related CTD-associated factor 117129450872129503280Rat
41400373LOC120093718uncharacterized LOC1200937187129558617129561264Rat
1564963Rpl10-ps13ribosomal protein L10, pseudogene 137129563991129564361Rat
41182148LOC120093945small nucleolar RNA SNORA707129564360129564464Rat
69645Slc38a1solute carrier family 38, member 17129612414129681727Rat
11462119LOC10835154340S ribosomal protein S13 pseudogene7129686890129687897Rat
402266845LOC134479562uncharacterized LOC1344795627129700196129703653Rat
41176034LOC120093902U6 spliceosomal RNA7129711012129711119Rat
69420Slc38a2solute carrier family 38, member 27129730450129742619Rat
41119802LOC120093719basic proline-rich protein-like7129749597129942677Rat
402119965LOC134479565uncharacterized LOC1344795657129752856129758215Rat
9433635LOC103692969uncharacterized LOC1036929697129793134129805753Rat
402104192LOC134479566uncharacterized LOC1344795667129840972129842706Rat
7547951LOC102550409uncharacterized LOC1025504097129865948129870876Rat
402290654LOC134479564uncharacterized LOC1344795647129874981129879353Rat
402410628LOC134479561uncharacterized LOC1344795617129878965129888307Rat
41049206LOC120093720basic proline-rich protein-like7129942679129944106Rat
40932637LOC120093721basic proline-rich protein-like7129944111129945469Rat
40999724Prob1-ps2proline-rich basic protein 1, pseudogene 27129945474129947222Rat
11400036LOC108351545uncharacterized LOC1083515457129955423130022854Rat
41217139LOC120093722uncharacterized LOC1200937227129974350129988718Rat
621836Slc38a4solute carrier family 38, member 47130022039130082169Rat
11517703LOC108351546uncharacterized LOC1083515467130027353130039011Rat
41373483LOC120093723uncharacterized LOC1200937237130092812130095272Rat
41202363LOC120093724uncharacterized LOC1200937247130103309130113325Rat
7516478LOC102547634uncharacterized LOC1025476347130132315130159058Rat
402343735LOC134479781uncharacterized LOC1344797817130170250130171006Rat
41263331LOC120093726uncharacterized LOC1200937267130171143130172722Rat
402087144LOC134479611uncharacterized LOC1344796117130221648130222397Rat
402063159LOC134479563uncharacterized LOC1344795637130256754130258503Rat
727911Amigo2adhesion molecule with Ig like domain 27130270639130273735Rat
1561028Pced1bPC-esterase domain containing 1B7130273531130451727Rat
1584994Btf3-ps7basic transcription factor 3, pseudogene 77130412647130413811Rat
402042264LOC134479567uncharacterized LOC1344795677130424026130427133Rat
1565798Tpt1l1tumor protein, translationally-controlled 1 like 17130456035130461611Rat
402076854LOC134479782uncharacterized LOC1344797827130476177130478086Rat
41011907LOC120093728uncharacterized LOC1200937287130545558130551814Rat
41345330Rps3-ps3ribosomal protein S3, pseudogene 37130567819130569945Rat
41283471LOC120093894uncharacterized LOC1200938947130619676130628589Rat
402232955LOC134479783DNA methyltransferase 1-associated protein 1-like7130659113130675371Rat
1303036Rpap3RNA polymerase II associated protein 37130689923130719411Rat
1593011Endouendonuclease, poly(U)-specific7130723972130745672Rat
401981735LOC134479568uncharacterized LOC1344795687130752469130757433Rat
621869Rapgef3Rap guanine nucleotide exchange factor 37130754883130777303Rat
7551090LOC102548155uncharacterized LOC1025481557130775936130781769Rat
1562880Slc48a1solute carrier family 48 member 17130794233130802119Rat
619982Hdac7histone deacetylase 77130803013130841181Rat
11486581LOC108351548uncharacterized LOC1083515487130832333130882722Rat
9431488LOC103692974uncharacterized LOC1036929747130853042130854893Rat
3959Vdrvitamin D receptor7130864764130916757Rat
1311532Tmem106ctransmembrane protein 106C7130967526130973205Rat
2375Col2a1collagen type II alpha 1 chain7130977561131006627Rat
1310275Senp1SUMO specific peptidase 17131042237131105826Rat
41162028LOC120093995small nucleolar RNA SNORA177131072779131072904Rat
68419Pfkmphosphofructokinase, muscle7131100684131138250Rat
402241406LOC134479569uncharacterized LOC1344795697131123791131125700Rat
41008587Trnat-agu34transfer RNA threonine (anticodon AGU) 347131134155131134227Rat
1309246Asb8ankyrin repeat and SOCS box-containing 87131140455131176648Rat
41320113LOC120093732uncharacterized LOC1200937327131155052131159746Rat
1593153Ccdc184coiled-coil domain containing 1847131178732131180136Rat
1562157Or10ad1olfactory receptor family 10 subfamily AD member 17131197516131198340Rat
1332673Olr1102olfactory receptor 11027131216924131220946Rat
1560560Olr1877olfactory receptor 18777131247246131260892Rat
6491231Hnrnpa1-ps4heterogeneous nuclear ribonucleoprotein A1, pseudogene 47131274651131276073Rat
1560024H1f7H1.7 linker histone7131287569131288936Rat
1310412Zfp641zinc finger protein 6417131313620131324149Rat
1333884Or8s16olfactory receptor family 8 subfamily S member 167131345014131345973Rat
1333494Or8s5olfactory receptor family 8 subfamily S member 57131369160131370077Rat
1333319Or8s2olfactory receptor family 8 subfamily S member 27131394211131395140Rat
1590570C7h12orf54similar to human chromosome 12 open reading frame 547131408859131427722Rat
1333183Or8s10olfactory receptor family 8 subfamily S member 107131434491131460236Rat
41064737LOC120094029U2 spliceosomal RNA7131453035131453136Rat
1589441Rps10-ps3ribosomal protein S10, pseudogene 37131465402131465942Rat
1333018Or8s8olfactory receptor family 8 subfamily S member 87131470811131471746Rat
402091058LOC134479784uncharacterized LOC1344797847131489737131499096Rat
1333460Or5bs2-ps1olfactory receptor family 5 subfamily BS member 2, pseudogene 17131496124131496903Rat
1333810Olr1110-psolfactory receptor pseudogene 11107131499044131499217Rat
2987Lalbalactalbumin, alpha7131504572131520707Rat
1333079Or11m3olfactory receptor family 11 subfamily M member 37131523665131524597Rat
1303127Kansl2KAT8 regulatory NSL complex subunit 27131548062131564876Rat
41256975Snora34small nucleolar RNA, H/ACA box 347131548985131549120Rat
41344582Snora2bsmall nucleolar RNA, H/ACA box 2B7131555365131555501Rat
1311151Ccnt1cyclin T17131566176131596988Rat
1305928Spmip11sperm microtubule inner protein 117131599977131621508Rat
2035Adcy6adenylate cyclase 67131621860131642923Rat
1307226Tuba1ctubulin, alpha 1C7131636974132078589Rat
7673988Cst3-ps1cystatin C, pseudogene 17131637033131637687Rat
2248Cacnb3calcium voltage-gated channel auxiliary subunit beta 37131663810131676085Rat
1308685Ddx23DEAD-box helicase 237131676636131693917Rat
1306338Rnd1Rho family GTPase 17131700321131707392Rat
9093489LOC103692978uncharacterized LOC1036929787131719513131736052Rat
1595842Ccdc65coiled-coil domain containing 657131736002131749761Rat
1306161Fkbp11FKBP prolyl isomerase 117131750828131757784Rat
621273Arf3ARF GTPase 37131765039131792075Rat
1304988Wnt10bWnt family member 10B7131801046131806850Rat
11411001Trnak-uuu3transfer RNA lysine (anticodon UUU) 37131810401131810473Rat
1597195Wnt1Wnt family member 17131817558131821605Rat
2497Ddndendrin7131832270131836252Rat
3388Prkag1protein kinase AMP-activated non-catalytic subunit gamma 17131842058131859484Rat
2324324Kmt2dlysine methyltransferase 2D7131859696131901032Rat
727778Rhebl1RHEB like 17131905207131910088Rat
620711Dhhdesert hedgehog signaling molecule7131929857131935352Rat
1309631Lmbr1llimb development membrane protein 1-like7131940081131958832Rat
1587022Rpl13-ps3ribosomal protein L13, pseudogene 37131962607131963828Rat
1565476Tuba1btubulin, alpha 1B7131969606131972587Rat
619717Tuba1atubulin, alpha 1A7131992151131996850Rat
41270427Rpl23a-ps8ribosomal protein L23a, pseudogene 87132002820132003459Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10253D7Wox201447116607460116607604Ratregion
10852D7Mit192047131505284131505488Ratregion
33798D7Mit242537123548057123548310Ratregion
33816D7Mit11947118618608118618702Ratregion
34395D7Mgh11507123682399123682549Ratregion
33729D7Mit101687123048162123048330Ratregion
33784D7Mit81897127236430127236619Ratregion
36193D7Rat31127131686183131686295Ratregion
35559D7Rat131527119280025119280177Ratregion
37750D7Rat521497121799044121799193Ratregion
37866D7Rat812737124100121124100394Ratregion
36420D7Rat62477124814966124815213Ratregion
35034D7Rat22527132020162132020414Ratregion
35118D7Rat71707121049782121049952Ratregion
35681D7Rat51527125929265125929417Ratregion
35773D7Rat81217121393075121393196Ratregion
39648D7Rat1271997116977875116978074Ratregion
39794D7Rat1171267130819165130819291Ratregion
39910D7Rat1192167127112899127113115Ratregion
38076D7Rat851367122048737122048873Ratregion
38136D7Rat622287125651300125651528Ratregion
38306D7Rat971797118556868118557047Ratregion
38364D7Rat712187118610412118610630Ratregion
40378D7Rat1231677119935202119935369Ratregion
40582D7Rat1741367117865229117865365Ratregion
38474D7Rat1111137122108430122108543Ratregion
40100D7Rat1221657118994829118994994Ratregion
39062D7Rat561297117741418117741547Ratregion
39422D7Rat1211557120725296120725451Ratregion
42205D7Arb101967116607455116607651Ratregion
42839D7Rat2002527116763941116764193Ratregion
42840D7Rat1972287122119963122120191Ratregion
42842D7Rat1721827130691009130691191Ratregion
41474D7Rat1201557120705696120705851Ratregion
41014D7Rat1282377116407851116408088Ratregion
41828D7Rat1992397119542527119542766Ratregion
41886D7Rat1982147119460723119460937Ratregion
44315D7Got1092917117632217117632508Ratregion
44320D7Got1272897122469221122469510Ratregion
44326D7Got1172077119844319119844526Ratregion
44329D7Got1312897125057246125057535Ratregion
44335D7Got1262857127112817127113102Ratregion
44337D7Got1151437126332491126332634Ratregion
60558D7Got1062407118732505118732745Ratregion
60560D7Got133957130445537130445632Ratregion
60562D7Got1361467129312634129312780Ratregion
66603D7Mco63387127685733127686071Ratregion
67755D7Uwm221367118716298118716434Ratregion
1633343D7Got2352437122760247122760490Ratregion
1640699D7Wox49987123219929123220027Ratregion
1633865D7Wox482047124144703124144907Ratregion
5038712AW1085362127122286396122286608Ratregion
5036119Cntn11587125438333125438491Ratregion
5036259Dhh1167131930884131931000Ratregion
5034680BI2757851607119456947119457107Ratregion
5035004COL2A15187130978676130979194Ratregion
5030033BG3781831417130022183130022324Ratregion
5052253L064441657117270124117270289Ratregion
5059818BE0979631497117176960117177109Ratregion
5054669RH1433577227126325254126325976Ratregion
5041812RH1290731547122319377122319531Ratregion
5044762RH1307891727129682541129682713Ratregion
5047718RH1324887887116780716116781504Ratregion
5042136RH1292611807131566188131566368Ratregion
5042612RH1295397177122044918122045635Ratregion
5072822RH1370741887130995857130996045Ratregion
5077186RH1396117737117952081117952854Ratregion
5077646RH1398761967120714326120714522Ratregion
5067246AU0478721657130277473130277638Ratregion
5068334AU0472092247124943001124943225Ratregion
5068354AU0471972147119796281119796495Ratregion
5061870AW5339391667122113903122114069Ratregion
5064716BF4115572367130972053130972289Ratregion
5064944BF4053131837122470220122470403Ratregion
5084242AI0133261937130024001130024194Ratregion
5086488BM3857942087129520254129520462Ratregion
5089477AU0491792607125510987125511247Ratregion
5081058RH1419401827131700466131700648Ratregion
5084446AA8504052097130972924130973133Ratregion
5083177BF3909321837127562226127562409Ratregion
5086622Pfkm2287131137986131138214Ratregion
5503573UniSTS:4646581307130978646130978776Ratregion
5503851Wnt10b9097131802206131803115Ratregion
5505454Tspo7427116608334116609076Ratregion
5501876MARC_16689-16690:1017862088:16537122375809122376462Ratregion
5502154MARC_6513-6514:996689732:17857130806355130807140Ratregion
Position Markers

Flank 1: (D7Rat21)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2791,281,130 - 91,281,285 (+)MAPPER
Rnor_6.07100,028,953 - 100,029,107NCBI
Rnor_5.07100,609,080 - 100,609,234UniSTS
RGSC_v3.4796,517,746 - 96,517,901RGD
RGSC_v3.4796,517,747 - 96,517,901UniSTS
RGSC_v3.1796,551,976 - 96,552,131RGD
Celera788,041,825 - 88,041,979UniSTS
SHRSP x BN Map752.31UniSTS
SHRSP x BN Map752.31RGD
Peak: (D7Wox48)
Rat AssemblyChrPosition (strand)Source
GRCr87124,144,703 - 124,144,907 (+)Marker Load Pipeline
mRatBN7.27122,265,140 - 122,265,344 (+)MAPPER
Rnor_6.07132,296,671 - 132,296,874NCBI
Rnor_5.07131,970,582 - 131,970,785UniSTS
RGSC_v3.47129,544,865 - 129,545,068UniSTS
Celera7118,715,727 - 118,715,930UniSTS
Cytogenetic Map7q35UniSTS
Flank 2: (D7Rat2)
Rat AssemblyChrPosition (strand)Source
GRCr87132,020,162 - 132,020,414 (+)Marker Load Pipeline
RGSC_v3.47137,757,333 - 137,757,704RGD
RGSC_v3.17137,833,770 - 137,834,141RGD
RH 3.4 Map71075.7RGD
RH 3.4 Map71075.7UniSTS
RH 2.0 Map7784.8RGD
SHRSP x BN Map786.2099RGD
FHH x ACI Map771.29RGD
Cytogenetic Map7 RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7119280025135560836Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)7116269196132020414Rat
1582240Sffal1Serum free fatty acids level QTL 13.40.0021blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)7118556868125929417Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general software used: R/QTL and QTL Cartographer 2303106
qtl_general number of animals used: 574 animals which were negative for glycosuria until 165 days 2303106