Cox14 (cytochrome c oxidase assembly factor COX14) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cox14 (cytochrome c oxidase assembly factor COX14) Rattus norvegicus
Analyze
Symbol: Cox14
Name: cytochrome c oxidase assembly factor COX14
RGD ID: 1598052
Description: Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human COX14 (cytochrome c oxidase assembly factor COX14); INTERACTS WITH 3-chloropropane-1,2-diol; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C12orf62; COX14 cytochrome c oxidase assembly; COX14, cytochrome c oxidase assembly factor; cytochrome c oxidase assembly protein 14; cytochrome c oxidase assembly protein COX14; hypothetical protein LOC681219; LOC681219; MGC105597
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27130,852,226 - 130,854,316 (+)NCBI
Rnor_6.0 Ensembl7141,380,322 - 141,380,495 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07141,378,537 - 141,380,960 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X115,883,197 - 115,885,604 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,451,395 - 138,469,295 (+)NCBIRGSC3.4rn4RGSC3.4
Celera7127,333,532 - 127,335,955 (+)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:18614015   PMID:22243966   PMID:22356826  


Genomics

Comparative Map Data
Cox14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27130,852,226 - 130,854,316 (+)NCBI
Rnor_6.0 Ensembl7141,380,322 - 141,380,495 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07141,378,537 - 141,380,960 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X115,883,197 - 115,885,604 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,451,395 - 138,469,295 (+)NCBIRGSC3.4rn4RGSC3.4
Celera7127,333,532 - 127,335,955 (+)NCBICelera
Cytogenetic Map7q36NCBI
COX14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1250,112,082 - 50,120,457 (+)EnsemblGRCh38hg38GRCh38
GRCh381250,112,236 - 50,120,453 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371250,506,019 - 50,514,236 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,792,167 - 48,800,501 (+)NCBINCBI36hg18NCBI36
Celera1249,301,386 - 49,309,712 (+)NCBI
Cytogenetic Map12q13.12NCBI
HuRef1247,539,086 - 47,547,544 (+)NCBIHuRef
CHM1_11250,471,914 - 50,480,383 (+)NCBICHM1_1
Cox14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,623,499 - 99,626,017 (+)NCBIGRCm39mm39
GRCm39 Ensembl1599,623,528 - 99,627,413 (+)Ensembl
GRCm381599,725,618 - 99,728,136 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,725,647 - 99,729,532 (+)EnsemblGRCm38mm10GRCm38
MGSCv371599,556,049 - 99,558,567 (+)NCBIGRCm37mm9NCBIm37
MGSCv361599,553,681 - 99,556,148 (+)NCBImm8
Celera15101,881,390 - 101,883,690 (+)NCBICelera
Cytogenetic Map15F1NCBI
LOC102015156
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547676,342 - 690,777 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955547690,167 - 690,777 (+)NCBIChiLan1.0ChiLan1.0
LOC100981933
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11239,532,786 - 39,541,104 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01238,635,386 - 38,643,804 (-)NCBIMhudiblu_PPA_v0panPan3
COX14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,609,156 - 4,614,325 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,609,385 - 4,609,558 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,643,854 - 41,649,021 (+)NCBI
ROS_Cfam_1.0274,658,277 - 4,663,449 (-)NCBI
UMICH_Zoey_3.1274,622,964 - 4,628,327 (-)NCBI
UNSW_CanFamBas_1.0274,612,647 - 4,617,820 (-)NCBI
UU_Cfam_GSD_1.02742,038,888 - 42,044,052 (+)NCBI
LOC101956167
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,388,046 - 65,393,682 (-)NCBI
SpeTri2.0NW_0049365127,776,321 - 7,776,784 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC110260660
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1516,016,419 - 16,021,676 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103238297
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,339,901 - 46,349,088 (+)NCBI
ChlSab1.1 Ensembl1146,348,669 - 46,348,839 (+)Ensembl
Vero_WHO_p1.0NW_023666037199,770,581 - 199,780,333 (-)NCBI
LOC101701927
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248162,197,701 - 2,202,931 (-)NCBI

Position Markers
AA875621  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27130,854,064 - 130,854,254 (+)MAPPER
Rnor_6.07141,380,466 - 141,380,655NCBIRnor6.0
Rnor_5.0X115,885,114 - 115,885,303UniSTSRnor5.0
RGSC_v3.47138,468,801 - 138,468,990UniSTSRGSC3.4
Celera7127,335,461 - 127,335,650UniSTS
RH 3.4 Map71134.82UniSTS
Cytogenetic Map7q36UniSTS
RH127433  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27130,851,238 - 130,851,449 (+)MAPPER
Rnor_6.07141,377,640 - 141,377,850NCBIRnor6.0
Rnor_5.0X115,882,288 - 115,882,498UniSTSRnor5.0
RGSC_v3.47138,465,975 - 138,466,185UniSTSRGSC3.4
Celera7127,332,635 - 127,332,845UniSTS
RH 3.4 Map71078.1UniSTS
Cytogenetic Map7q36UniSTS
RH127899  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27130,854,015 - 130,854,233 (+)MAPPER
Rnor_6.07141,380,417 - 141,380,634NCBIRnor6.0
Rnor_5.0X115,885,065 - 115,885,282UniSTSRnor5.0
RGSC_v3.47138,468,752 - 138,468,969UniSTSRGSC3.4
Celera7127,335,412 - 127,335,629UniSTS
RH 3.4 Map71085.1UniSTS
Cytogenetic Map7q36UniSTS
RH128342  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27130,840,111 - 130,840,296 (+)MAPPER
Rnor_6.07141,366,514 - 141,366,698NCBIRnor6.0
Rnor_5.0X115,871,162 - 115,871,346UniSTSRnor5.0
RGSC_v3.47138,454,849 - 138,455,033UniSTSRGSC3.4
Celera7127,321,509 - 127,321,693UniSTS
RH 3.4 Map71077.0UniSTS
Cytogenetic Map7q36UniSTS
AW061147  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27130,854,140 - 130,854,238 (+)MAPPER
Rnor_6.07141,380,542 - 141,380,639NCBIRnor6.0
Rnor_5.0X115,885,190 - 115,885,287UniSTSRnor5.0
RGSC_v3.47138,468,877 - 138,468,974UniSTSRGSC3.4
Celera7127,335,537 - 127,335,634UniSTS
Cytogenetic Map7q36UniSTS
22.MMHAP28FLH1.seq  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27130,851,090 - 130,851,283 (+)MAPPER
Rnor_6.07141,377,492 - 141,377,684NCBIRnor6.0
Rnor_5.0X115,882,140 - 115,882,332UniSTSRnor5.0
RGSC_v3.47138,465,827 - 138,466,019UniSTSRGSC3.4
Celera7127,332,487 - 127,332,679UniSTS
Cytogenetic Map7q36UniSTS
RH143139  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27130,853,238 - 130,853,343 (+)MAPPER
Rnor_6.07141,379,640 - 141,379,744NCBIRnor6.0
Rnor_5.0X115,884,288 - 115,884,392UniSTSRnor5.0
RGSC_v3.47138,467,975 - 138,468,079UniSTSRGSC3.4
Celera7127,334,635 - 127,334,739UniSTS
RH 3.4 Map71076.3UniSTS
Cytogenetic Map7q36UniSTS
BF399697  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27130,847,422 - 130,847,666 (+)MAPPER
Rnor_6.07141,373,825 - 141,374,068NCBIRnor6.0
Rnor_5.0X115,878,473 - 115,878,716UniSTSRnor5.0
RGSC_v3.47138,462,160 - 138,462,403UniSTSRGSC3.4
Celera7127,328,820 - 127,329,063UniSTS
RH 3.4 Map71051.11UniSTS
Cytogenetic Map7q36UniSTS
AI008150  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27130,840,159 - 130,840,295 (+)MAPPER
Rnor_6.07141,366,562 - 141,366,697NCBIRnor6.0
Rnor_5.0X115,871,210 - 115,871,345UniSTSRnor5.0
RGSC_v3.47138,454,897 - 138,455,032UniSTSRGSC3.4
Celera7127,321,557 - 127,321,692UniSTS
RH 3.4 Map71076.2UniSTS
Cytogenetic Map7q36UniSTS
RH124655  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27130,839,924 - 130,840,119 (+)MAPPER
Rnor_6.07141,366,327 - 141,366,521NCBIRnor6.0
Rnor_5.0X115,870,975 - 115,871,169UniSTSRnor5.0
RGSC_v3.47138,454,662 - 138,454,856UniSTSRGSC3.4
Celera7127,321,322 - 127,321,516UniSTS
Cytogenetic Map7q36UniSTS
Gpd1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27130,850,541 - 130,851,498 (+)MAPPER
Rnor_6.07141,376,943 - 141,377,899NCBIRnor6.0
Rnor_5.0X115,881,591 - 115,882,547UniSTSRnor5.0
RGSC_v3.47138,465,278 - 138,466,234UniSTSRGSC3.4
Celera7127,331,938 - 127,332,894UniSTS
Cytogenetic Map7q36UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)771448715145729302Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7111519266143965591Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7121986439143965591Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7120746024145692398Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7129412003145729302Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7115922628145729302Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7114825174145729302Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)7106564316145729302Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7122421276143965415Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7121654760145729302Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)751251919145729302Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)7100028953145729302Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)7100192194145192194Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)796630946141630946Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)791832949145158140Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)791832949145158140Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:105
Interacting mature miRNAs:113
Transcripts:ENSRNOT00000038757
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000091207   ⟹   ENSRNOP00000068826
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7141,380,322 - 141,380,495 (+)Ensembl
RefSeq Acc Id: NM_001377081   ⟹   NP_001364010
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27130,852,226 - 130,854,316 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001364010 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH84716 (Get FASTA)   NCBI Sequence Viewer  
  Q5XFV8 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: ENSRNOP00000068826   ⟸   ENSRNOT00000091207
RefSeq Acc Id: NP_001364010   ⟸   NM_001377081

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1598052 AgrOrtholog
Ensembl Genes ENSRNOG00000061425 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000068826 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000091207 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7314502 IMAGE-MGC_LOAD
InterPro COX14 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105597 IMAGE-MGC_LOAD
NCBI Gene 681219 ENTREZGENE
PANTHER PTHR36684 UniProtKB/Swiss-Prot
Pfam COX14 UniProtKB/Swiss-Prot
PhenoGen Cox14 PhenoGen
UniProt COX14_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-07-20 Cox14  cytochrome c oxidase assembly factor COX14  Cox14  COX14, cytochrome c oxidase assembly factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-11-14 Cox14  COX14, cytochrome c oxidase assembly factor  Cox14  cytochrome c oxidase assembly protein 14  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-10-17 Cox14  cytochrome c oxidase assembly protein 14  Cox14  COX14 cytochrome c oxidase assembly  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-09-26 Cox14  COX14 cytochrome c oxidase assembly  LOC681219  hypothetical protein LOC681219  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC681219  hypothetical protein LOC681219      Symbol and Name status set to provisional 70820 PROVISIONAL