Dnaaf11 (dynein axonemal assembly factor 11) - Rat Genome Database

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Gene: Dnaaf11 (dynein axonemal assembly factor 11) Rattus norvegicus
Analyze
Symbol: Dnaaf11
Name: dynein axonemal assembly factor 11
RGD ID: 1559937
Description: Predicted to be involved in cilium assembly; male gonad development; and protein localization to motile cilium. Predicted to act upstream of or within epithelial cilium movement involved in extracellular fluid movement; flagellated sperm motility; and protein localization to cilium. Predicted to be located in cilium. Predicted to be active in apical cytoplasm and cytosol. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 19. Orthologous to human DNAAF11 (dynein axonemal assembly factor 11); INTERACTS WITH 2,5-hexanedione; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: leucine rich repeat containing 6; leucine rich repeat containing 6 (testis); leucine-rich testis-specific protein; LOC103690245; LOC299920; Lrrc6; Lrtp; MGC114437; similar to testis specific protein; Tslrp; uncharacterized LOC103690245
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87100,033,843 - 100,134,979 (-)NCBIGRCr8
mRatBN7.2798,141,525 - 98,245,906 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl798,144,763 - 98,245,837 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx799,899,274 - 100,006,426 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07102,100,939 - 102,208,084 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07102,020,292 - 102,127,442 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07107,130,402 - 107,231,507 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7107,130,402 - 107,223,047 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07107,073,711 - 107,174,936 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.07107,265,345 - 107,276,742 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47103,747,640 - 103,851,124 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera794,698,248 - 94,798,326 (-)NCBICelera
Cytogenetic Map7q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10775177   PMID:23122589   PMID:27353389   PMID:29891944   PMID:29916806  


Genomics

Comparative Map Data
Dnaaf11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87100,033,843 - 100,134,979 (-)NCBIGRCr8
mRatBN7.2798,141,525 - 98,245,906 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl798,144,763 - 98,245,837 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx799,899,274 - 100,006,426 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07102,100,939 - 102,208,084 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07102,020,292 - 102,127,442 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07107,130,402 - 107,231,507 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7107,130,402 - 107,223,047 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07107,073,711 - 107,174,936 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.07107,265,345 - 107,276,742 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47103,747,640 - 103,851,124 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera794,698,248 - 94,798,326 (-)NCBICelera
Cytogenetic Map7q33NCBI
DNAAF11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388132,570,416 - 132,702,913 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8132,570,416 - 132,675,592 (-)EnsemblGRCh38hg38GRCh38
GRCh378133,582,664 - 133,687,791 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368133,653,629 - 133,756,995 (-)NCBINCBI36Build 36hg18NCBI36
Build 348133,653,630 - 133,756,995NCBI
Celera8129,759,252 - 129,862,622 (-)NCBICelera
Cytogenetic Map8q24.22NCBI
HuRef8128,902,733 - 129,006,332 (-)NCBIHuRef
CHM1_18133,624,994 - 133,728,649 (-)NCBICHM1_1
T2T-CHM13v2.08133,693,703 - 133,826,388 (-)NCBIT2T-CHM13v2.0
Dnaaf11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391566,251,707 - 66,372,769 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1566,251,707 - 66,372,759 (-)EnsemblGRCm39 Ensembl
GRCm381566,379,858 - 66,500,921 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1566,379,858 - 66,500,910 (-)EnsemblGRCm38mm10GRCm38
MGSCv371566,211,420 - 66,332,472 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361566,209,527 - 66,330,510 (-)NCBIMGSCv36mm8
Celera1567,903,643 - 68,032,794 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1529.22NCBI
Dnaaf11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554617,204,339 - 7,312,241 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554617,204,165 - 7,311,524 (-)NCBIChiLan1.0ChiLan1.0
DNAAF11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27149,957,976 - 150,063,701 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18125,472,529 - 125,578,472 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08129,223,591 - 129,329,535 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18132,199,607 - 132,305,351 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8132,199,607 - 132,305,351 (-)Ensemblpanpan1.1panPan2
DNAAF11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11329,128,500 - 29,199,354 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1329,128,504 - 29,199,323 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1329,101,416 - 29,172,254 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01329,482,884 - 29,553,592 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1329,482,877 - 29,553,561 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11329,209,949 - 29,280,586 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01329,309,966 - 29,380,707 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01329,622,148 - 29,692,826 (-)NCBIUU_Cfam_GSD_1.0
Dnaaf11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053039,131,239 - 9,214,410 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647016,557,371 - 16,640,553 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647016,557,381 - 16,640,519 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAAF11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl48,532,739 - 8,608,582 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.148,531,612 - 8,605,904 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.248,570,672 - 8,644,007 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNAAF11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18127,010,303 - 127,103,343 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8127,008,619 - 127,103,300 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603913,003,355 - 13,096,192 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnaaf11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473523,269,414 - 23,355,968 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473523,269,253 - 23,355,832 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dnaaf11
454 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:190
Count of miRNA genes:142
Interacting mature miRNAs:153
Transcripts:ENSRNOT00000007250
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
10450828Scl79Serum cholesterol level QTL 793.50.001blood HDL cholesterol amount (VT:0000184)blood low density lipoprotein cholesterol level (CMO:0000053)789867376101773158Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)793595647106839474Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
7 4 12 106 38 44 13 15 13 6 83 41 93 19 56 31

Sequence


Ensembl Acc Id: ENSRNOT00000007250   ⟹   ENSRNOP00000007250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl798,184,245 - 98,245,837 (-)Ensembl
Rnor_6.0 Ensembl7107,130,586 - 107,223,047 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084875   ⟹   ENSRNOP00000072085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl798,204,510 - 98,237,821 (-)Ensembl
Rnor_6.0 Ensembl7107,189,782 - 107,223,047 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086263   ⟹   ENSRNOP00000069241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl798,145,130 - 98,245,837 (-)Ensembl
Rnor_6.0 Ensembl7107,130,402 - 107,203,897 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093671   ⟹   ENSRNOP00000093652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl798,144,763 - 98,245,837 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104821   ⟹   ENSRNOP00000096305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl798,144,763 - 98,245,837 (-)Ensembl
RefSeq Acc Id: NM_001025659   ⟹   NP_001020830
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,034,202 - 100,134,901 (-)NCBI
mRatBN7.2798,145,130 - 98,245,837 (-)NCBI
Rnor_6.07107,130,402 - 107,231,507 (-)NCBI
Rnor_5.07107,265,345 - 107,276,742 (-)NCBI
RGSC_v3.47103,747,640 - 103,851,124 (-)RGD
Celera794,698,248 - 94,798,326 (-)RGD
Sequence:
RefSeq Acc Id: XM_039078777   ⟹   XP_038934705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,033,843 - 100,134,965 (-)NCBI
mRatBN7.2798,141,525 - 98,245,900 (-)NCBI
RefSeq Acc Id: XM_039078778   ⟹   XP_038934706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,033,843 - 100,134,966 (-)NCBI
mRatBN7.2798,141,525 - 98,245,902 (-)NCBI
RefSeq Acc Id: XM_039078779   ⟹   XP_038934707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,045,514 - 100,134,965 (-)NCBI
mRatBN7.2798,156,506 - 98,245,900 (-)NCBI
RefSeq Acc Id: XM_039078780   ⟹   XP_038934708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,045,514 - 100,134,966 (-)NCBI
mRatBN7.2798,156,457 - 98,245,901 (-)NCBI
RefSeq Acc Id: XM_039078781   ⟹   XP_038934709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,096,738 - 100,134,969 (-)NCBI
mRatBN7.2798,207,666 - 98,245,906 (-)NCBI
RefSeq Acc Id: XM_039078782   ⟹   XP_038934710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,033,843 - 100,101,114 (-)NCBI
mRatBN7.2798,141,525 - 98,212,040 (-)NCBI
RefSeq Acc Id: XM_063263250   ⟹   XP_063119320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,096,738 - 100,134,979 (-)NCBI
RefSeq Acc Id: XM_063263251   ⟹   XP_063119321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,033,843 - 100,126,275 (-)NCBI
RefSeq Acc Id: XR_005486579
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,034,428 - 100,134,966 (-)NCBI
mRatBN7.2798,145,356 - 98,245,902 (-)NCBI
RefSeq Acc Id: XR_005486580
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,045,514 - 100,134,966 (-)NCBI
mRatBN7.2798,156,442 - 98,245,902 (-)NCBI
RefSeq Acc Id: NP_001020830   ⟸   NM_001025659
- UniProtKB: A0A0G2JUV1 (UniProtKB/TrEMBL),   A6HRR2 (UniProtKB/TrEMBL),   A0A8I6APC6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072085   ⟸   ENSRNOT00000084875
Ensembl Acc Id: ENSRNOP00000007250   ⟸   ENSRNOT00000007250
Ensembl Acc Id: ENSRNOP00000069241   ⟸   ENSRNOT00000086263
RefSeq Acc Id: XP_038934706   ⟸   XM_039078778
- Peptide Label: isoform X2
- UniProtKB: A0A8I6APC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934705   ⟸   XM_039078777
- Peptide Label: isoform X1
- UniProtKB: A0A8I6APC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934710   ⟸   XM_039078782
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038934708   ⟸   XM_039078780
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AHZ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934707   ⟸   XM_039078779
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AHZ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934709   ⟸   XM_039078781
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000096305   ⟸   ENSRNOT00000104821
Ensembl Acc Id: ENSRNOP00000093652   ⟸   ENSRNOT00000093671
RefSeq Acc Id: XP_063119321   ⟸   XM_063263251
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063119320   ⟸   XM_063263250
- Peptide Label: isoform X6
Protein Domains
U2A'/phosphoprotein 32 family A C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ACP1-F1-model_v2 AlphaFold D4ACP1 1-470 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559937 AgrOrtholog
BioCyc Gene G2FUF-33126 BioCyc
Ensembl Genes ENSRNOG00000005233 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007250.8 UniProtKB/TrEMBL
  ENSRNOT00000084875.2 UniProtKB/TrEMBL
  ENSRNOT00000086263.2 UniProtKB/TrEMBL
  ENSRNOT00000093671.2 UniProtKB/TrEMBL
  ENSRNOT00000104821.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7453303 IMAGE-MGC_LOAD
InterPro L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  U2A'_phosphoprotein32A_C UniProtKB/TrEMBL
KEGG Report rno:299920 UniProtKB/TrEMBL
MGC_CLONE MGC:114437 IMAGE-MGC_LOAD
NCBI Gene 299920 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 410-RELATED UniProtKB/TrEMBL
  LEUCINE RICH REPEAT PROTEIN UniProtKB/TrEMBL
Pfam LRR_9 UniProtKB/TrEMBL
PhenoGen Dnaaf11 PhenoGen
PROSITE LRR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005233 RatGTEx
SMART LRR_SD22 UniProtKB/TrEMBL
  LRRcap UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A0G2JUV1 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K232_RAT UniProtKB/TrEMBL
  A0A8I6AHZ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6APC6 ENTREZGENE, UniProtKB/TrEMBL
  A6HRR2 ENTREZGENE, UniProtKB/TrEMBL
  D4ACP1_RAT UniProtKB/TrEMBL
  I6L9H6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Dnaaf11  dynein axonemal assembly factor 11  LOC103690245  uncharacterized LOC103690245  Data merged from RGD:9139473 737654 PROVISIONAL
2021-01-28 Dnaaf11  dynein axonemal assembly factor 11  Lrrc6  leucine rich repeat containing 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103690245  uncharacterized LOC103690245      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-02-25 Lrrc6  leucine rich repeat containing 6  Lrrc6  leucine rich repeat containing 6 (testis)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-22 Lrrc6  leucine rich repeat containing 6 (testis)  LOC299920  similar to testis specific protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC299920  similar to testis specific protein      Symbol and Name status set to provisional 70820 PROVISIONAL