Stl14 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Stl14 (Serum triglyceride level QTL 14) Rattus norvegicus

Symbol: Stl14
Name: Serum triglyceride level QTL 14
RGD ID: 1357339
Previously known as: Q7MS1
Trait: blood triglyceride amount   (VT:0002644)    
Measurement Type: serum triglyceride level   (CMO:0000360)    
LOD Score: 3.45
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr87135,371,291 - 137,014,596RGD_MAPPER_PIPELINE
mRatBN7.27112,729,683 - 133,492,707RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.07122,421,276 - 143,965,415RGD_MAPPER_PIPELINERnor6.0
Rnor_5.07122,402,980 - 141,760,721RGDRnor5.0
RGSC_v3.47119,494,698 - 141,116,327RGDRGSC3.4
RGSC_v3.17119,528,928 - 141,192,765RGD
Cross Type: Not Available
Strains Crossed: WOKW DA/K 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl14RatHypertriglyceridemia  IAGP 1357168 RGD 
Stl14RatMetabolic Syndrome  IAGP 1357168 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl14Ratincreased circulating triglyceride level  IAGP 1357168 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl14Ratserum triglyceride level  IDA 1357168 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl14Ratcontrol condition  IDA 1357168 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl14Ratautomated blood analysis  IDA 1357168 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl14RatDA/K  IEA 1357168 RGD 
Stl14RatWOKW  IEA 1357168 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl14Ratblood triglyceride amount  IDA 1357168 RGD 


#
Reference Title
Reference Citation
1. Sex-specific and sex-independent quantitative trait loci for facets of the metabolic syndrome in WOKW rats. Kloting I, etal., Biochem Biophys Res Commun 2001 Jun 1;284(1):150-6.


1 to 20 of 461 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
2321025Tmsb10-ps6thymosin, beta 10, pseudogene 67112743871112744335Rat
619841Mchr1melanin-concentrating hormone receptor 17112761554112764746Rat
41314877Trnas-aga50transfer RNA serine (anticodon AGA) 507112821076112821156Rat
41158614LOC120093696uncharacterized LOC1200936967112828249112849186Rat
1311498Slc25a17solute carrier family 25 member 177112844375112887014Rat
621312St13ST13, Hsp70 interacting protein7112891007112925727Rat
1589063Xpnpep3X-prolyl aminopeptidase 37112926154112978793Rat
1589047Dnajb7DnaJ heat shock protein family (Hsp40) member B77112932736112934050Rat
1308453Rbx1ring-box 17112976863113001051Rat
1586668Rpl37a-ps2ribosomal protein L37A, pseudogene 27112980952112981326Rat
41046357Trnap-agg43transfer RNA proline (anticodon AGG) 437112986973112987046Rat
41072219LOC120093697uncharacterized LOC1200936977113066608113104774Rat
620036Ep300E1A binding protein p3007113108476113178529Rat
41098964LOC120093921U6 spliceosomal RNA7113113865113113969Rat
11405140Rps35al1ribosomal protein L35A like 17113132632113133074Rat
1308569L3mbtl2L3MBTL histone methyl-lysine binding protein 27113186303113209706Rat
6504353Chadlchondroadherin-like7113205323113218678Rat
41261889LOC120093698uncharacterized LOC1200936987113218865113221648Rat
1310380Rangap1RAN GTPase activating protein 17113224695113250441Rat
1307064Zc3h7bzinc finger CCCH-type containing 7B7113262142113310399Rat

1 to 20 of 461 rows
1 to 20 of 621 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10252D7Mit121367114727471114727581Ratregion
10253D7Wox201447114727449114727593Ratregion
10447D7Wox212717113938271113938544Ratregion
10448D7Mgh32447113915925113916171Ratregion
10449D7Mit161627113886156113886318Ratregion
10472D7Wox301987114321734114321932Ratregion
10514D7Wox231157131786627131786744Ratregion
10515D7Mit262157131786600131786815Ratregion
11165D7Mit92767130221005130221281Ratregion
33798D7Mit242537121668493121668746Ratregion
33816D7Mit11947116738749116738842Ratregion
33838D3Mit181887116932605116932728Ratregion
34096D7Mgh41487112729554112729683Ratregion
33670D7Mit22997116294265116294546Ratregion
33780D7Mit11777133492707133492884Ratregion
33784D7Mit81897125357119125357308Ratregion
36193D7Rat31127129807172129807284Ratregion
37212D7Rat1011377133238570133238707Ratregion
37360D7Rat682127112982090112982302Ratregion
35304D7Rat41187127103496127103614Ratregion
1 to 20 of 621 rows

Flank 1: (D7Mit1)
Rat AssemblyChrPosition (strand)Source
GRCr87135,371,291 - 135,371,468 (+)Marker Load Pipeline
mRatBN7.27133,492,707 - 133,492,884 (+)MAPPER
Rnor_6.07143,965,415 - 143,965,591NCBI
Rnor_5.07141,760,721 - 141,760,897UniSTS
RGSC_v3.47141,116,327 - 141,116,504RGD
RGSC_v3.47141,116,328 - 141,116,504UniSTS
RGSC_v3.17141,192,765 - 141,192,941RGD
Celera7129,925,775 - 129,925,951UniSTS
RH 3.4 Map71065.7UniSTS
RH 3.4 Map71065.7RGD
RH 2.0 Map7799.2RGD
Cytogenetic Map7q36UniSTS
Peak: (D7Mit2)
Rat AssemblyChrPosition (strand)Source
mRatBN7.27116,294,265 - 116,294,546 (+)MAPPER
Rnor_6.07126,080,176 - 126,080,454NCBI
Rnor_5.07125,794,079 - 125,794,357UniSTS
RGSC_v3.47123,191,595 - 123,191,874RGD
RGSC_v3.47123,191,596 - 123,191,874UniSTS
RGSC_v3.17123,225,737 - 123,226,116RGD
Celera7112,592,399 - 112,592,677UniSTS
RH 3.4 Map7908.3UniSTS
RH 3.4 Map7908.3RGD
RH 2.0 Map7688.5RGD
Cytogenetic Map7 RGD
Flank 2: (D7Mgh4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.27112,729,554 - 112,729,683 (+)MAPPER
Rnor_6.07122,421,148 - 122,421,276NCBI
Rnor_5.07122,402,852 - 122,402,980UniSTS
RGSC_v3.47119,494,569 - 119,494,698RGD
RGSC_v3.47119,494,570 - 119,494,698UniSTS
RGSC_v3.17119,528,799 - 119,528,928RGD
Celera7109,051,894 - 109,052,022UniSTS
RH 3.4 Map7878.2RGD
RH 3.4 Map7878.2UniSTS


1 to 10 of 38 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat

1 to 10 of 38 rows


Database
Acc Id
Source(s)
NCBI Gene Stl14

Note Type Note Reference
qtl_general no linkage was observed in male F2 hybrids 1357168