Kif21a (kinesin family member 21A) - Rat Genome Database
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Gene: Kif21a (kinesin family member 21A) Rattus norvegicus
Analyze
Symbol: Kif21a
Name: kinesin family member 21A
RGD ID: 1305126
Description: Predicted to have ATP binding activity. Predicted to localize to cytosol and plasma membrane. Human ortholog(s) of this gene implicated in congenital fibrosis of the extraocular muscles. Orthologous to human KIF21A (kinesin family member 21A); INTERACTS WITH 17beta-estradiol; 2,6-dinitrotoluene; 2-methoxyethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: kinesin-like protein KIF21A; LOC300158
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27122,062,523 - 122,179,051 (-)NCBI
Rnor_6.0 Ensembl7132,071,116 - 132,143,470 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07132,069,962 - 132,200,947 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07131,745,370 - 131,874,205 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47129,337,712 - 129,456,728 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17129,372,341 - 129,490,867 (-)NCBI
Celera7118,514,265 - 118,629,868 (-)NCBICelera
Cytogenetic Map7q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:17728463   PMID:25931508  


Genomics

Comparative Map Data
Kif21a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27122,062,523 - 122,179,051 (-)NCBI
Rnor_6.0 Ensembl7132,071,116 - 132,143,470 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07132,069,962 - 132,200,947 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07131,745,370 - 131,874,205 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47129,337,712 - 129,456,728 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17129,372,341 - 129,490,867 (-)NCBI
Celera7118,514,265 - 118,629,868 (-)NCBICelera
Cytogenetic Map7q35NCBI
KIF21A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1239,293,228 - 39,443,390 (-)EnsemblGRCh38hg38GRCh38
GRCh381239,293,228 - 39,443,147 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371239,687,030 - 39,836,922 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361237,973,297 - 38,123,185 (-)NCBINCBI36hg18NCBI36
Build 341237,973,297 - 38,123,185NCBI
Celera1238,491,506 - 38,641,417 (-)NCBI
Cytogenetic Map12q12NCBI
HuRef1236,712,926 - 36,863,016 (-)NCBIHuRef
CHM1_11239,653,038 - 39,803,195 (-)NCBICHM1_1
Kif21a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391590,817,478 - 90,934,547 (-)NCBIGRCm39mm39
GRCm39 Ensembl1590,817,479 - 90,934,151 (-)Ensembl
GRCm381590,933,275 - 91,050,382 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1590,933,276 - 91,049,948 (-)EnsemblGRCm38mm10GRCm38
MGSCv371590,763,707 - 90,880,379 (-)NCBIGRCm37mm9NCBIm37
MGSCv361590,762,150 - 90,877,578 (-)NCBImm8
Celera1593,057,433 - 93,174,641 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1545.86NCBI
Kif21a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955505933,270 - 998,853 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955505933,254 - 1,000,039 (+)NCBIChiLan1.0ChiLan1.0
KIF21A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11250,119,602 - 50,268,857 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1250,120,004 - 50,267,664 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01249,260,728 - 49,410,599 (+)NCBIMhudiblu_PPA_v0panPan3
KIF21A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2714,181,837 - 14,327,492 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12714,205,980 - 14,328,281 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Kif21a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366071,422,801 - 1,567,442 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF21A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl570,888,999 - 71,029,809 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1570,888,999 - 71,029,832 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2573,379,320 - 73,586,144 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIF21A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11135,552,583 - 35,709,117 (-)NCBI
ChlSab1.1 Ensembl1135,552,398 - 35,709,070 (-)Ensembl
Kif21a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247781,040,829 - 1,184,417 (+)NCBI

Position Markers
BE107582  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.07132,082,345 - 132,082,512NCBIRnor6.0
Rnor_5.07131,757,753 - 131,757,920UniSTSRnor5.0
RGSC_v3.47129,349,343 - 129,349,510UniSTSRGSC3.4
Celera7118,526,650 - 118,526,817UniSTS
RH 3.4 Map7967.7UniSTS
Cytogenetic Map7q35UniSTS
BE120060  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.07132,111,573 - 132,111,747NCBIRnor6.0
Rnor_5.07131,786,981 - 131,787,155UniSTSRnor5.0
RGSC_v3.47129,378,565 - 129,378,739UniSTSRGSC3.4
Celera7118,555,709 - 118,555,883UniSTS
RH 3.4 Map7967.3UniSTS
Cytogenetic Map7q35UniSTS
BE115225  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map7966.8UniSTS
Cytogenetic Map7q35UniSTS
BE115241  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.07132,116,019 - 132,116,190NCBIRnor6.0
Rnor_5.07131,791,427 - 131,791,598UniSTSRnor5.0
RGSC_v3.47129,383,011 - 129,383,182UniSTSRGSC3.4
Celera7118,560,155 - 118,560,326UniSTS
RH 3.4 Map7967.7UniSTS
Cytogenetic Map7q35UniSTS
ECD03969  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera7118,598,565 - 118,599,489UniSTS
Cytogenetic Map7q35UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)751251919145729302Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)771448715145729302Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)781645773140745067Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)788365265133365265Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)788365265134673427Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)791018361136018361Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)791832949145158140Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)791832949145158140Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)793726906138726906Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)793726906138726906Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)796630946141630946Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)7100028953145729302Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)7100160423140335001Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)7100192194145192194Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)7106564316145729302Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7111519266143965591Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7114825174145729302Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7115922628145729302Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7120746024145692398Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7121654760145729302Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7121986439143965591Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7122421276143965415Rat
1582240Sffal1Serum free fatty acids level QTL 13.40.0021blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)7126463649134098026Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)7126463827137325116Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7129412003145729302Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:491
Count of miRNA genes:136
Interacting mature miRNAs:147
Transcripts:ENSRNOT00000038946, ENSRNOT00000044092, ENSRNOT00000045553, ENSRNOT00000046744, ENSRNOT00000055742, ENSRNOT00000066528
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 10 12 10 10 74 35 33
Low 3 33 45 31 14 31 8 11 8 11 8
Below cutoff 5

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001371538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ096185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000038946   ⟹   ENSRNOP00000031911
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7132,071,116 - 132,143,470 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000044092   ⟹   ENSRNOP00000044677
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7132,071,116 - 132,143,470 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000045553   ⟹   ENSRNOP00000039402
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7132,071,116 - 132,143,470 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000046744   ⟹   ENSRNOP00000040915
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7132,071,116 - 132,143,470 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000055742   ⟹   ENSRNOP00000052600
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7132,116,609 - 132,143,470 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000066528   ⟹   ENSRNOP00000059755
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7132,071,116 - 132,143,470 (-)Ensembl
RefSeq Acc Id: NM_001371538   ⟹   NP_001358467
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,535 - 122,178,999 (-)NCBI
RefSeq Acc Id: XM_008765828   ⟹   XP_008764050
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765829   ⟹   XP_008764051
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765830   ⟹   XP_008764052
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765831   ⟹   XP_008764053
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765832   ⟹   XP_008764054
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765833   ⟹   XP_008764055
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765834   ⟹   XP_008764056
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765835   ⟹   XP_008764057
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776561   ⟹   XP_008774783
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776562   ⟹   XP_008774784
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776563   ⟹   XP_008774785
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776564   ⟹   XP_008774786
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776565   ⟹   XP_008774787
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776566   ⟹   XP_008774788
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776567   ⟹   XP_008774789
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776568   ⟹   XP_008774790
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776569   ⟹   XP_008774791
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776570   ⟹   XP_008774792
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776571   ⟹   XP_008774793
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008776572   ⟹   XP_008774794
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595289   ⟹   XP_017450778
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595290   ⟹   XP_017450779
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595291   ⟹   XP_017450780
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595292   ⟹   XP_017450781
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595293   ⟹   XP_017450782
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595294   ⟹   XP_017450783
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595295   ⟹   XP_017450784
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595296   ⟹   XP_017450785
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595297   ⟹   XP_017450786
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595298   ⟹   XP_017450787
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595299   ⟹   XP_017450788
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07132,069,962 - 132,200,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017603483   ⟹   XP_017458972
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017603484   ⟹   XP_017458973
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017603485   ⟹   XP_017458974
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017603486   ⟹   XP_017458975
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017603487   ⟹   XP_017458976
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017603488   ⟹   XP_017458977
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017603489   ⟹   XP_017458978
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7118,514,265 - 118,629,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039078880   ⟹   XP_038934808
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078881   ⟹   XP_038934809
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,179,051 (-)NCBI
RefSeq Acc Id: XM_039078882   ⟹   XP_038934810
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078883   ⟹   XP_038934811
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078884   ⟹   XP_038934812
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078885   ⟹   XP_038934813
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078886   ⟹   XP_038934814
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078887   ⟹   XP_038934815
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078888   ⟹   XP_038934816
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078890   ⟹   XP_038934818
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078891   ⟹   XP_038934819
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078892   ⟹   XP_038934820
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078893   ⟹   XP_038934821
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078894   ⟹   XP_038934822
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078895   ⟹   XP_038934823
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078896   ⟹   XP_038934824
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078897   ⟹   XP_038934825
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,179,012 (-)NCBI
RefSeq Acc Id: XM_039078898   ⟹   XP_038934826
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
RefSeq Acc Id: XM_039078899   ⟹   XP_038934827
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27122,062,523 - 122,130,829 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_008774793   ⟸   XM_008776571
- Peptide Label: isoform X37
- Sequence:
RefSeq Acc Id: XP_008774787   ⟸   XM_008776565
- Peptide Label: isoform X29
- Sequence:
RefSeq Acc Id: XP_008774785   ⟸   XM_008776563
- Peptide Label: isoform X25
- Sequence:
RefSeq Acc Id: XP_008774794   ⟸   XM_008776572
- Peptide Label: isoform X38
- Sequence:
RefSeq Acc Id: XP_008774792   ⟸   XM_008776570
- Peptide Label: isoform X36
- Sequence:
RefSeq Acc Id: XP_008774791   ⟸   XM_008776569
- Peptide Label: isoform X34
- Sequence:
RefSeq Acc Id: XP_008774790   ⟸   XM_008776568
- Peptide Label: isoform X33
- Sequence:
RefSeq Acc Id: XP_008774789   ⟸   XM_008776567
- Peptide Label: isoform X32
- Sequence:
RefSeq Acc Id: XP_008774788   ⟸   XM_008776566
- Peptide Label: isoform X30
- Sequence:
RefSeq Acc Id: XP_008774786   ⟸   XM_008776564
- Peptide Label: isoform X28
- Sequence:
RefSeq Acc Id: XP_008774784   ⟸   XM_008776562
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_008774783   ⟸   XM_008776561
- Peptide Label: isoform X21
- Sequence:
RefSeq Acc Id: XP_008764056   ⟸   XM_008765834
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_008764052   ⟸   XM_008765830
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_008764057   ⟸   XM_008765835
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_008764055   ⟸   XM_008765833
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_008764054   ⟸   XM_008765832
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_008764053   ⟸   XM_008765831
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_008764051   ⟸   XM_008765829
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_008764050   ⟸   XM_008765828
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017458976   ⟸   XM_017603487
- Peptide Label: isoform X27
- Sequence:
RefSeq Acc Id: XP_017458975   ⟸   XM_017603486
- Peptide Label: isoform X26
- Sequence:
RefSeq Acc Id: XP_017458974   ⟸   XM_017603485
- Peptide Label: isoform X24
- Sequence:
RefSeq Acc Id: XP_017458978   ⟸   XM_017603489
- Peptide Label: isoform X35
- Sequence:
RefSeq Acc Id: XP_017458977   ⟸   XM_017603488
- Peptide Label: isoform X31
- Sequence:
RefSeq Acc Id: XP_017458973   ⟸   XM_017603484
- Peptide Label: isoform X23
- Sequence:
RefSeq Acc Id: XP_017458972   ⟸   XM_017603483
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_017450784   ⟸   XM_017595295
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017450783   ⟸   XM_017595294
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017450782   ⟸   XM_017595293
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017450781   ⟸   XM_017595292
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017450788   ⟸   XM_017595299
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017450787   ⟸   XM_017595298
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017450786   ⟸   XM_017595297
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017450785   ⟸   XM_017595296
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017450780   ⟸   XM_017595291
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017450779   ⟸   XM_017595290
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017450778   ⟸   XM_017595289
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000052600   ⟸   ENSRNOT00000055742
RefSeq Acc Id: ENSRNOP00000039402   ⟸   ENSRNOT00000045553
RefSeq Acc Id: ENSRNOP00000031911   ⟸   ENSRNOT00000038946
RefSeq Acc Id: ENSRNOP00000059755   ⟸   ENSRNOT00000066528
RefSeq Acc Id: ENSRNOP00000040915   ⟸   ENSRNOT00000046744
RefSeq Acc Id: ENSRNOP00000044677   ⟸   ENSRNOT00000044092
RefSeq Acc Id: XP_038934809   ⟸   XM_039078881
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038934825   ⟸   XM_039078897
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038934826   ⟸   XM_039078898
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038934816   ⟸   XM_039078888
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038934814   ⟸   XM_039078886
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038934813   ⟸   XM_039078885
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038934827   ⟸   XM_039078899
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038934824   ⟸   XM_039078896
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038934823   ⟸   XM_039078895
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038934822   ⟸   XM_039078894
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038934821   ⟸   XM_039078893
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038934820   ⟸   XM_039078892
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038934819   ⟸   XM_039078891
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038934818   ⟸   XM_039078890
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038934815   ⟸   XM_039078887
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038934812   ⟸   XM_039078884
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038934811   ⟸   XM_039078883
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038934810   ⟸   XM_039078882
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038934808   ⟸   XM_039078880
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001358467   ⟸   NM_001371538
Protein Domains
Kinesin motor   WD_REPEATS_REGION

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305126 AgrOrtholog
Ensembl Genes ENSRNOG00000014844 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000031911 UniProtKB/TrEMBL
  ENSRNOP00000039402 UniProtKB/TrEMBL
  ENSRNOP00000040915 UniProtKB/TrEMBL
  ENSRNOP00000044677 UniProtKB/TrEMBL
  ENSRNOP00000052600 UniProtKB/TrEMBL
  ENSRNOP00000059755 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038946 UniProtKB/TrEMBL
  ENSRNOT00000044092 UniProtKB/TrEMBL
  ENSRNOT00000045553 UniProtKB/TrEMBL
  ENSRNOT00000046744 UniProtKB/TrEMBL
  ENSRNOT00000055742 UniProtKB/TrEMBL
  ENSRNOT00000066528 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
InterPro Kinesin-like_fam UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene 300158 ENTREZGENE
PANTHER PTHR24115 UniProtKB/TrEMBL
Pfam Kinesin UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PhenoGen Kif21a PhenoGen
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_DOMAIN1 UniProtKB/TrEMBL
  KINESIN_MOTOR_DOMAIN2 UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART KISc UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  WD40_like UniProtKB/TrEMBL
UniProt D3ZCG2_RAT UniProtKB/TrEMBL
  D3ZJJ7_RAT UniProtKB/TrEMBL
  D3ZSN6_RAT UniProtKB/TrEMBL
  D3ZYN2_RAT UniProtKB/TrEMBL
  D4A1V5_RAT UniProtKB/TrEMBL
  D4ADI4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Kif21a  kinesin family member 21A   Kif21a_predicted  kinesin family member 21A (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Kif21a_predicted  kinesin family member 21A (predicted)      Symbol and Name status set to approved 70820 APPROVED