KIF21A (kinesin family member 21A) - Rat Genome Database

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Gene: KIF21A (kinesin family member 21A) Chlorocebus sabaeus
Analyze
Symbol: KIF21A
Name: kinesin family member 21A
RGD ID: 18422265
Description: ENCODES a protein that exhibits ankyrin repeat binding (inferred); ATP binding (inferred); cytoskeletal motor activity (inferred); INVOLVED IN microtubule-based movement (inferred); mitotic spindle organization (inferred); spindle elongation (inferred); ASSOCIATED WITH aniridia (ortholog); congenital fibrosis of the extraocular muscles (ortholog); congenital fibrosis of the extraocular muscles 1 (ortholog); FOUND IN cytoplasm (inferred); cytoskeleton (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kinesin-like protein KIF21A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11135,552,583 - 35,709,117 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1135,552,398 - 35,709,070 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KIF21A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11135,552,583 - 35,709,117 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1135,552,398 - 35,709,070 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
KIF21A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381239,293,228 - 39,443,120 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1239,293,228 - 39,443,390 (-)EnsemblGRCh38hg38GRCh38
GRCh371239,687,030 - 39,836,922 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361237,973,297 - 38,123,185 (-)NCBINCBI36Build 36hg18NCBI36
Build 341237,973,297 - 38,123,185NCBI
Celera1238,491,506 - 38,641,417 (-)NCBICelera
Cytogenetic Map12q12NCBI
HuRef1236,712,926 - 36,863,016 (-)NCBIHuRef
CHM1_11239,653,038 - 39,803,195 (-)NCBICHM1_1
T2T-CHM13v2.01239,243,102 - 39,393,006 (-)NCBIT2T-CHM13v2.0
Kif21a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391590,817,478 - 90,934,547 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1590,817,479 - 90,934,151 (-)EnsemblGRCm39 Ensembl
GRCm381590,933,275 - 91,050,382 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1590,933,276 - 91,049,948 (-)EnsemblGRCm38mm10GRCm38
MGSCv371590,763,707 - 90,880,379 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361590,762,150 - 90,877,578 (-)NCBIMGSCv36mm8
Celera1593,057,433 - 93,174,641 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1545.86NCBI
Kif21a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87123,942,079 - 124,058,594 (-)NCBIGRCr8
mRatBN7.27122,062,523 - 122,179,051 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7122,062,537 - 122,178,999 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7123,854,939 - 123,970,301 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07126,081,032 - 126,196,407 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07126,006,588 - 126,123,573 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07132,069,962 - 132,200,947 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7132,071,116 - 132,143,470 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07131,745,370 - 131,874,205 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47129,337,712 - 129,456,728 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17129,372,341 - 129,490,867 (-)NCBI
Celera7118,514,265 - 118,629,868 (-)NCBICelera
Cytogenetic Map7q35NCBI
Kif21a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955505933,270 - 998,853 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955505933,254 - 1,000,039 (+)NCBIChiLan1.0ChiLan1.0
KIF21A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21054,703,810 - 54,853,692 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11254,700,566 - 54,850,429 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01249,260,728 - 49,410,599 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11250,119,602 - 50,268,857 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1250,120,004 - 50,267,664 (+)Ensemblpanpan1.1panPan2
KIF21A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12714,205,980 - 14,328,281 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2714,181,837 - 14,327,492 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2732,106,413 - 32,253,458 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02714,349,652 - 14,496,915 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2714,349,861 - 14,496,908 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12714,158,284 - 14,305,216 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02714,196,495 - 14,343,909 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02732,254,554 - 32,401,776 (-)NCBIUU_Cfam_GSD_1.0
Kif21a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494574,589,439 - 74,734,072 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366071,423,217 - 1,566,268 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366071,422,801 - 1,567,442 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF21A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl570,889,000 - 71,029,809 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1570,888,999 - 71,029,832 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2573,379,320 - 73,586,144 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Kif21a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247781,040,468 - 1,186,831 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247781,040,829 - 1,184,417 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20 60
Low 16 15
Below cutoff 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008002842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037997284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037997285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037997286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037997287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037997288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037997289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037997290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005240013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC239459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACDXN010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCSAT00000005354   ⟹   ENSCSAP00000003578
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1135,552,398 - 35,709,070 (-)Ensembl
RefSeq Acc Id: XM_008002848   ⟹   XP_008001039
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11135,552,583 - 35,709,034 (-)NCBI
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008002849   ⟹   XP_008001040
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11135,552,583 - 35,709,117 (-)NCBI
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008002851   ⟹   XP_008001042
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11135,552,583 - 35,709,034 (-)NCBI
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008002852   ⟹   XP_008001043
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11135,552,583 - 35,709,034 (-)NCBI
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008002853   ⟹   XP_008001044
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11135,552,583 - 35,709,117 (-)NCBI
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008002856   ⟹   XP_008001047
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11135,552,583 - 35,709,034 (-)NCBI
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008002860   ⟹   XP_008001051
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11135,552,583 - 35,709,117 (-)NCBI
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008002862   ⟹   XP_008001053
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11135,552,583 - 35,709,034 (-)NCBI
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008002863   ⟹   XP_008001054
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11135,552,583 - 35,709,034 (-)NCBI
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037997284   ⟹   XP_037853212
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
RefSeq Acc Id: XM_037997285   ⟹   XP_037853213
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
RefSeq Acc Id: XM_037997286   ⟹   XP_037853214
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
RefSeq Acc Id: XM_037997287   ⟹   XP_037853215
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
RefSeq Acc Id: XM_037997288   ⟹   XP_037853216
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
RefSeq Acc Id: XM_037997289   ⟹   XP_037853217
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037211,087,796 - 211,244,317 (+)NCBI
RefSeq Acc Id: XM_037997290   ⟹   XP_037853218
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037211,088,276 - 211,244,317 (+)NCBI
RefSeq Acc Id: XR_005240013
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037211,087,796 - 211,235,282 (+)NCBI
RefSeq Acc Id: XP_008001051   ⟸   XM_008002860
- Peptide Label: isoform X9
RefSeq Acc Id: XP_008001044   ⟸   XM_008002853
- Peptide Label: isoform X6
RefSeq Acc Id: XP_008001040   ⟸   XM_008002849
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008001053   ⟸   XM_008002862
- Peptide Label: isoform X14
RefSeq Acc Id: XP_008001047   ⟸   XM_008002856
- Peptide Label: isoform X8
RefSeq Acc Id: XP_008001054   ⟸   XM_008002863
- Peptide Label: isoform X16
RefSeq Acc Id: XP_008001043   ⟸   XM_008002852
- Peptide Label: isoform X5
RefSeq Acc Id: XP_008001042   ⟸   XM_008002851
- Peptide Label: isoform X3
RefSeq Acc Id: XP_008001039   ⟸   XM_008002848
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R4N9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000003578   ⟸   ENSCSAT00000005354
RefSeq Acc Id: XP_037853213   ⟸   XM_037997285
- Peptide Label: isoform X7
RefSeq Acc Id: XP_037853214   ⟸   XM_037997286
- Peptide Label: isoform X10
RefSeq Acc Id: XP_037853215   ⟸   XM_037997287
- Peptide Label: isoform X11
RefSeq Acc Id: XP_037853216   ⟸   XM_037997288
- Peptide Label: isoform X12
RefSeq Acc Id: XP_037853217   ⟸   XM_037997289
- Peptide Label: isoform X13
RefSeq Acc Id: XP_037853212   ⟸   XM_037997284
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037853218   ⟸   XM_037997290
- Peptide Label: isoform X15


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007316 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005354.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
InterPro Kinesin-like_fam UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene KIF21A ENTREZGENE
PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED UniProtKB/TrEMBL
  KINESIN MOTOR DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Kinesin UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART KISc UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP Prefoldin UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9R4N9 ENTREZGENE, UniProtKB/TrEMBL