Csad (cysteine sulfinic acid decarboxylase)

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Gene: Csad (cysteine sulfinic acid decarboxylase) Rattus norvegicus

Analyze

Symbol:

Csad

Name:

cysteine sulfinic acid decarboxylase

RGD ID:

621030

Description:

Enables sulfinoalanine decarboxylase activity. Involved in L-cysteine catabolic process to hypotaurine and L-cysteine catabolic process to taurine. Located in cytoplasm. Orthologous to human CSAD (cysteine sulfinic acid decarboxylase); PARTICIPATES IN taurine and hypotaurine metabolic pathway; transsulfuration pathway of homocysteine metabolism; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3,3',5-triiodo-L-thyronine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

aspartate 1-decarboxylase; cysteine-sulfinate decarboxylase; sulfinoalanine decarboxylase

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	133,308,571 - 133,337,914 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	133,308,574 - 133,337,615 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	135,069,925 - 135,098,194 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	137,299,292 - 137,327,561 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	137,283,882 - 137,312,672 (-)	NCBI	Rnor_WKY
Rnor_6.0	7	143,781,520 - 143,810,880 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	143,781,702 - 143,793,970 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	141,579,061 - 141,608,043 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	140,917,995 - 140,944,405 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	140,994,262 - 141,036,798 (-)	NCBI
Celera	7	129,743,152 - 129,755,012 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2,4-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,3',5-triiodo-L-thyronine (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (EXP,ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

Benzo[k]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

bromobenzene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

chlorohydrocarbon (EXP)

clobetasol (ISO)

clofibrate (ISO)

cocaine (EXP)

coumarin (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

dioxygen (ISO)

endosulfan (EXP)

entinostat (ISO)

epoxiconazole (ISO)

finasteride (EXP)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP,ISO)

gentamycin (EXP)

glycidol (EXP)

indometacin (ISO)

lead(0) (ISO)

lead(2+) (ISO)

linezolid (EXP)

lipopolysaccharide (ISO)

methapyrilene (EXP)

methyl methanesulfonate (ISO)

Muraglitazar (EXP)

N,N-diethyl-m-toluamide (EXP)

N-nitrosodiethylamine (ISO)

N-nitrosodimethylamine (EXP)

naphthalenes (EXP)

nickel atom (ISO)

nimesulide (EXP)

paracetamol (EXP,ISO)

paraquat (EXP)

parathion (ISO)

perfluorooctanoic acid (ISO)

permethrin (EXP,ISO)

phenformin (EXP)

phenobarbital (EXP,ISO)

pirinixic acid (EXP,ISO)

pravastatin (EXP,ISO)

propiconazole (ISO)

Propiverine (EXP)

quercetin (ISO)

quinolin-8-ol (ISO)

rac-lactic acid (ISO)

ritodrine (ISO)

sodium arsenite (EXP)

sotorasib (ISO)

succimer (ISO)

tamoxifen (ISO)

tauroursodeoxycholic acid (EXP)

Tesaglitazar (EXP)

testosterone (EXP,ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trametinib (ISO)

trovafloxacin (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vancomycin (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carboxylic acid metabolic process (IEA)

L-cysteine catabolic process to hypotaurine (IDA)

L-cysteine catabolic process to taurine (IDA)

taurine biosynthetic process (IBA,IEA,ISO,TAS)

Cellular Component

cytoplasm (IBA,IDA)

cytosol (TAS)

Molecular Function

aspartate 1-decarboxylase activity (IEA)

carboxy-lyase activity (IEA)

pyridoxal phosphate binding (IEA)

sulfinoalanine decarboxylase activity (IBA,IDA)

Molecular Pathway Annotations Click to see Annotation Detail View

taurine and hypotaurine metabolic pathway (IEA,ISO)

transsulfuration pathway of homocysteine metabolism (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	A novel growth-inducible gene that encodes a protein with a conserved cold-shock domain.	Ito K, etal., Nucleic Acids Res 1994 Jun 11;22(11):2036-41.
3.	Cloning and characterization of rat cysteine sulfinic acid decarboxylase.	Kaisaki PJ, etal., Biochim Biophys Acta 1995 May 17;1262(1):79-82.
4.	KEGG: Kyoto Encyclopedia of Genes and Genomes	KEGG
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
9.	Molecular cloning and sequence analysis of the cDNA encoding rat liver cysteine sulfinate decarboxylase (CSD).	Reymond I, etal., Biochim Biophys Acta 1996 Jun 7;1307(2):152-6.
10.	Immunocytochemical localization of cysteine sulfinate decarboxylase in astrocytes in the cerebellum and hippocampus: a quantitative double immunofluorescence study with glial fibrillary acidic protein and S-100 protein.	Reymond I, etal., Neuroscience. 1996 Nov;75(2):619-33.
11.	GOA pipeline	RGD automated data pipeline
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	Dealing with methionine/homocysteine sulfur: cysteine metabolism to taurine and inorganic sulfur.	Stipanuk MH and Ueki I, J Inherit Metab Dis. 2011 Feb;34(1):17-32. doi: 10.1007/s10545-009-9006-9. Epub 2010 Feb 17.
14.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
15.	Cysteine sulfinate decarboxylase (CSD): molecular cloning, sequence and genomic expression in brain.	Tappaz M, etal., Adv Exp Med Biol. 1998;442:25-32.
16.	Characterization of the cDNA coding for rat brain cysteine sulfinate decarboxylase: brain and liver enzymes are identical proteins encoded by two distinct mRNAs.	Tappaz M, etal., J Neurochem 1999 Sep;73(3):903-12.

Additional References at PubMed

PMID:15489334	PMID:17634260	PMID:24639894

Genomics

Comparative Map Data

Csad
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	133,308,571 - 133,337,914 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	133,308,574 - 133,337,615 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	135,069,925 - 135,098,194 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	137,299,292 - 137,327,561 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	137,283,882 - 137,312,672 (-)	NCBI	Rnor_WKY
Rnor_6.0	7	143,781,520 - 143,810,880 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	143,781,702 - 143,793,970 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	141,579,061 - 141,608,043 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	140,917,995 - 140,944,405 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	140,994,262 - 141,036,798 (-)	NCBI
Celera	7	129,743,152 - 129,755,012 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

CSAD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	53,157,663 - 53,181,351 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	12	53,157,663 - 53,180,925 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	53,551,447 - 53,574,709 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	51,837,714 - 51,860,647 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	51,837,714 - 51,860,647	NCBI
Celera	12	53,200,050 - 53,223,033 (-)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	50,594,015 - 50,617,263 (-)	NCBI		HuRef
CHM1_1	12	53,517,875 - 53,541,124 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	53,123,259 - 53,146,521 (-)	NCBI		T2T-CHM13v2.0

Csad
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	102,085,432 - 102,113,487 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	102,085,434 - 102,113,159 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	102,176,997 - 102,205,052 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	102,176,999 - 102,204,724 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	102,007,429 - 102,019,474 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	102,005,032 - 102,017,077 (-)	NCBI		MGSCv36	mm8
Celera	15	104,331,920 - 104,345,992 (-)	NCBI		Celera
Cytogenetic Map	15	F2	NCBI

Csad
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	423,085 - 433,429 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	423,156 - 449,763 (-)	NCBI	ChiLan1.0	ChiLan1.0

CSAD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	36,354,360 - 36,379,738 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	36,354,437 - 36,379,738 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	35,572,064 - 35,598,077 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

CSAD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	2,005,482 - 2,036,703 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	2,005,355 - 2,036,228 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	44,212,975 - 44,245,324 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	2,008,554 - 2,041,174 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	2,028,291 - 2,041,167 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	2,027,628 - 2,058,651 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	2,011,598 - 2,043,893 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	44,613,914 - 44,645,943 (-)	NCBI		UU_Cfam_GSD_1.0

Csad
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	62,689,751 - 62,717,369 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	10,447,461 - 10,474,985 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936512	10,447,457 - 10,475,231 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CSAD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	18,379,288 - 18,410,646 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	18,379,340 - 18,410,446 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	18,793,689 - 18,805,868 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CSAD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	49,256,629 - 49,288,367 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	49,256,628 - 49,288,112 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	196,772,440 - 196,805,680 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Csad
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624904	1,189,366 - 1,228,566 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624904	1,190,393 - 1,228,337 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Csad
148 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	373
Count of miRNA genes:	209
Interacting mature miRNAs:	229
Transcripts:	ENSRNOT00000016205
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	102297359	133492884	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat
631663	Bw6	Body weight QTL 6	3.4		body mass (VT:0001259)	body weight (CMO:0000012)	7	111075573	134976056	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	111182207	135012528	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	112308254	133492884	Rat
1357339	Stl14	Serum triglyceride level QTL 14	3.45	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	112729683	133492707	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	119513385	135012528	Rat

Markers in Region

AI576585

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	133,309,191 - 133,309,408 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	143,782,141 - 143,782,357	NCBI	Rnor6.0
Rnor_5.0	7	141,579,682 - 141,579,898	UniSTS	Rnor5.0
RGSC_v3.4	7	140,918,446 - 140,918,662	UniSTS	RGSC3.4
Celera	7	129,743,603 - 129,743,819	UniSTS
RH 3.4 Map	7	1062.1	UniSTS
Cytogenetic Map	7	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1	26	51	35	14	35	1	1	74	35	34	11	1
Low	2	17	6	6	5	6	7	10			7		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_021750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC110347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AH008061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ132615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ132661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU786150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU906909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M64755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U74492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X94152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000016205 ⟹ ENSRNOP00000016205

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	133,309,011 - 133,337,615 (-)	Ensembl
Rnor_6.0 Ensembl	7	143,781,781 - 143,793,970 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079678 ⟹ ENSRNOP00000073508

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	133,308,574 - 133,336,981 (-)	Ensembl
Rnor_6.0 Ensembl	7	143,781,702 - 143,793,774 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102299 ⟹ ENSRNOP00000087863

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	133,308,574 - 133,323,786 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110884 ⟹ ENSRNOP00000093937

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	133,308,574 - 133,336,981 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113521 ⟹ ENSRNOP00000080923

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	133,309,346 - 133,337,615 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117956 ⟹ ENSRNOP00000085105

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	133,308,574 - 133,336,981 (-)	Ensembl

RefSeq Acc Id:

NM_021750 ⟹ NP_068518

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,308,571 - 133,336,981 (-)	NCBI
Rnor_6.0	7	143,781,747 - 143,793,970 (-)	NCBI
Rnor_5.0	7	141,579,061 - 141,608,043 (-)	NCBI
RGSC_v3.4	7	140,917,995 - 140,944,405 (-)	RGD
Celera	7	129,743,209 - 129,755,012 (-)	NCBI

Sequence:

show sequence

CTTCCTGAAGCTGGAAGATTTCACCCTGATGGCTGACTCAAAACCACTCAGAACCCTGGATGGG
GACCCTGTGGCTGTGGAGGCTTTGCTCCGGGACGTGTTTGGGATTGTCGTAGATGAGGCCATTC
GGAAGGGGACCAATGCCTCTGAGAAGGTCTGCGAATGGAAGGAGCCTGAAGAGCTCAAGCAGCT
GCTGGACTTGGAGCTGCAGAGCCAGGGCGAGTCTAGGGAGCGGATCCTGGAGCGCTGCCGGGCT
GTGATTCATTACAGTGTCAAGACTGGTCACCCCCGGTTCTTCAACCAGCTCTTCTCAGGATTAG
ATCCCCATGCTCTGGCCGGGCGCATCATTACGGAGAGCCTCAATACCAGCCAGTACACATATGA
GATTGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAAGAAACTCCGTGCCCTTGTGGGC
TGGAACACTGGGGATGGGGTCTTCTGTCCTGGTGGTTCCATCTCTAACATGTACGCCATAAACC
TGGCCCGCTTTCAGCGCTACCCAGACTGCAAGCAGAGGGGCCTCCGGGCCCTGCCACCCTTGGC
CCTCTTCACTTCAAAGGAGTGCCACTACTCCATCACCAAGGGAGCTGCTTTTCTGGGACTTGGC
ACCGACAGTGTCCGAGTGGTCAAGGCTGATGAGAGAGGGAAGATGATCCCTGAGGATCTGGAGA
GGCAGATCAGTCTGGCAGAGGCTGAGGGCTCGGTGCCATTTCTGGTCAGTGCCACCTCTGGTAC
CACCGTGCTAGGGGCCTTTGACCCCCTGGATGCAATTGCCGATGTTTGCCAGCGTCACGGGCTG
TGGTTACACGTGGATGCCGCCTGGGGTGGGAGCGTCCTGCTGTCCCGGACACACAGGCATCTCC
TGGATGGGATCCAGAGGGCTGACTCCGTGGCCTGGAACCCTCACAAGCTTCTCGCCGCGGGGCT
GCAGTGCTCTGCTCTTCTTCTCCGGGACACCTCGAACCTGCTCAAGCGCTGCCACGGGTCCCAG
GCCAGCTACCTCTTCCAGCAAGACAAGTTCTACAACGTGGCTCTGGACACCGGAGACAAGGTGG
TGCAGTGTGGCCGCCGCGTGGACTGTCTGAAGCTGTGGCTCATGTGGAAGGCGCAGGGTGGGCA
AGGGCTGGAGTGGCGCATCGACCAGGCCTTTGCTCTCACTCGGTACTTGGTGGAGGAGATAAAA
AAGCGGGAAGGATTTGAGTTGGTCATGGAGCCCGAGTTCGTCAACGTGTGCTTCTGGTTTGTGC
CTCCCAGCCTGCGGGGGAAGAAGGAGAGCCCAGATTACAGCCAGAGGCTGTCTCAGGTGGCCCC
TGTGCTCAAGGAGCGCATGGTGAAGAAGGGAACCATGATGATCGGCTACCAGCCCCATGGGACC
CGGGCCAACTTCTTCCGAATGGTGGTGGCCAACCCCATACTGGTCCAGGCCGATATAGACTTCC
TTCTGGGCGAGCTGGAGCGTCTGGGCCAGGACCTGTGAGCTGCTTCCTCTCTCTGCCCCACCCA
AGCTCTGCATAAGCTCCTGGGTTCCCAAAAGCGACCTTTCTAGGAAACAGTGGCCTTGACTGTG
TGAGCCCCCACACACTAACTCTCCTAGCTAAGTATTGGCTGCCAGGACGGTGTCTAAGCACACT
ACAGTCTGTTCTTACGAAATGTGCTTCTTTTAAGTCGGTCATAGTGGTACACACCGTTAATACC
AGCACTGGGGAGGCAGAGGCAGACACAAGCAGATCTCTTGAGTTTGAGGCCAGCCTGGTCTACA
GAGCTGGCCTACACAGAAAAAAAACCTGTCTCAAAAAAAAAGAAAGGAAGGAAGAAAGAAAGGA
AAAGAAAGAAATATTTTTCATTAAGATTATGTCTATAAAAAATTGTTATTAATATGAGAGATAT
GGTACGATGTATTAAGAAAGCTAGATATGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCCCTTG
CCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCACAAAAAAAAAA
AAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242438 ⟹ XP_006242500

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,308,571 - 133,337,911 (-)	NCBI
Rnor_6.0	7	143,781,520 - 143,810,880 (-)	NCBI
Rnor_5.0	7	141,579,061 - 141,608,043 (-)	NCBI

Sequence:

show sequence

GAAAGGGAGATGAGGCCCTCAGGTGCAACATCCTCAGGCCATACACCGAGAGAAGCTCTCTCAA
CTTATTTTGCTGGACGTTCTGAAGCTCGAAAGGAGGACATGAGTCAAGAGCTTTCTTTCTAGGT
CAGTAGAAGAAATTGGCCTTCTGGGCCAGAACAAACAGCCAACAGGAGCAAAAGTAAGTTGGGC
CTCCTATAGAGAGGATCTGCCAACGGAGTTAGTGCTGGGATTTGCCATCTTAGGAACGGAAGAA
GGGGGCGGAGGCCCTTTGGGGCTTTTGTGCGGAGTGGGCCGGCCTGCAAAGCTGGCACTCCACA
GACGAGGGCAGAACCGTGGTGGGAGGAAGCTCGGGGGCCTCCGCCGAGCACCGAGGTGGCTGGC
AGTGCCCGCACGTGAGCGTCACTCGGAGCTCCCCCGAAGATTTCACCCTGATGGCTGACTCAAA
ACCACTCAGAACCCTGGATGGGGACCCTGTGGCTGTGGAGGCTTTGCTCCGGGACGTGTTTGGG
ATTGTCGTAGATGAGGCCATTCGGAAGGGGACCAATGCCTCTGAGAAGGTCTGCGAATGGAAGG
AGCCTGAAGAGCTCAAGCAGCTGCTGGACTTGGAGCTGCAGAGCCAGGGCGAGTCTAGGGAGCG
GATCCTGGAGCGCTGCCGGGCTGTGATTCATTACAGTGTCAAGACTGGTCACCCCCGGTTCTTC
AACCAGCTCTTCTCAGGATTAGATCCCCATGCTCTGGCCGGGCGCATCATTACGGAGAGCCTCA
ATACCAGCCAGTACACATATGAGATTGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAA
GAAACTCCGTGCCCTTGTGGGCTGGAACACTGGGGATGGGGTCTTCTGTCCTGGTGGTTCCATC
TCTAACATGTACGCCATAAACCTGGCCCGCTTTCAGCGCTACCCAGACTGCAAGCAGAGGGGCC
TCCGGGCCCTGCCACCCTTGGCCCTCTTCACTTCAAAGGAGTGCCACTACTCCATCACCAAGGG
AGCTGCTTTTCTGGGACTTGGCACCGACAGTGTCCGAGTGGTCAAGGCTGATGAGAGAGGGAAG
ATGATCCCTGAGGATCTGGAGAGGCAGATCAGTCTGGCAGAGGCTGAGGGCTCGGTGCCATTTC
TGGTCAGTGCCACCTCTGGTACCACCGTGCTAGGGGCCTTTGACCCCCTGGATGCAATTGCCGA
TGTTTGCCAGCGTCACGGGCTGTGGTTACACGTGGATGCCGCCTGGGGTGGGAGCGTCCTGCTG
TCCCGGACACACAGGCATCTCCTGGATGGGATCCAGAGGGCTGACTCCGTGGCCTGGAACCCTC
ACAAGCTTCTCGCCGCGGGGCTGCAGTGCTCTGCTCTTCTTCTCCGGGACACCTCGAACCTGCT
CAAGCGCTGCCACGGGTCCCAGGCCAGCTACCTCTTCCAGCAAGACAAGTTCTACAACGTGGCT
CTGGACACCGGAGACAAGGTGGTGCAGTGTGGCCGCCGCGTGGACTGTCTGAAGCTGTGGCTCA
TGTGGAAGGCGCAGGGTGGGCAAGGGCTGGAGTGGCGCATCGACCAGGCCTTTGCTCTCACTCG
GTACTTGGTGGAGGAGATAAAAAAGCGGGAAGGATTTGAGTTGGTCATGGAGCCCGAGTTCGTC
AACGTGTGCTTCTGGTTTGTGCCTCCCAGCCTGCGGGGGAAGAAGGAGAGCCCAGATTACAGCC
AGAGGCTGTCTCAGGTGGCCCCTGTGCTCAAGGAGCGCATGGTGAAGAAGGGAACCATGATGAT
CGGCTACCAGCCCCATGGGACCCGGGCCAACTTCTTCCGAATGGTGGTGGCCAACCCCATACTG
GTCCAGGCCGATATAGACTTCCTTCTGGGCGAGCTGGAGCGTCTGGGCCAGGACCTGTGAGCTG
CTTCCTCTCTCTGCCCCACCCAAGCTCTGCATAAGCTCCTGGGTTCCCAAAAGCGACCTTTCTA
GGAAACAGTGGCCTTGACTGTGTGAGCCCCCACACACTAACTCTCCTAGCTAAGTATTGGCTGC
CAGGACGGTGTCTAAGCACACTACAGTCTGTTCTTACGAAATGTGCTTCTTTTAAGTCGGTCAT
AGTGGTACACACCGTTAATACCAGCACTGGGGAGGCAGAGGCAGACACAAGCAGATCTCTTGAG
TTTGAGGCCAGCCTGGTCTACAGAGCTGGCCTACACAGAAAAAAAACCTGTCTCAAAAAAAAAG
AAAGGAAGGAAGAAAGAAAGGAAAAGAAAGAAATATTTTTCATTAAGATTATGTCTATAAAAAA
TTGTTATTAATATGAGAGATATGGTACGATGTATTAAGAAAGCTAGATATGGGGGTTGGGGATT
TAGCTCAGTGGTAGAGCCCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAA
AAAAAGAACCACAAAAAAAAAAAAAAAAAAAAGAAAGCTAGATATGAGTTTATATATCATGGTA
TCTGAGTTAAACTAAAAAAAAAAAATACATAGGAAAAGGCGGTGAGTGGAACTGTGCCAAAGGT
CAGCAGTTTTCCCTGGAAGAGGATAACAGGCTGTTCCTAAGTCAGCCTCTCAGACCTTCCCTGC
TTCCCCACTTTATTATGTAACCACATCACCTACTTCTGAGATACAACAATAAAGCTTTGTCACT
ATA

hide sequence

RefSeq Acc Id:

XM_006242439 ⟹ XP_006242501

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,308,571 - 133,337,196 (-)	NCBI
Rnor_6.0	7	143,781,520 - 143,810,087 (-)	NCBI
Rnor_5.0	7	141,579,061 - 141,608,043 (-)	NCBI

Sequence:

show sequence

CGCGCGGCGCCCCCTCCAGGCCCCAGGCGCCCCGTGCCAAGCCCGCGGCCGCCGCTGCTCGCGC
CGGGACCGAGATTTCACCCTGATGGCTGACTCAAAACCACTCAGAACCCTGGATGGGGACCCTG
TGGCTGTGGAGGCTTTGCTCCGGGACGTGTTTGGGATTGTCGTAGATGAGGCCATTCGGAAGGG
GACCAATGCCTCTGAGAAGGTCTGCGAATGGAAGGAGCCTGAAGAGCTCAAGCAGCTGCTGGAC
TTGGAGCTGCAGAGCCAGGGCGAGTCTAGGGAGCGGATCCTGGAGCGCTGCCGGGCTGTGATTC
ATTACAGTGTCAAGACTGGTCACCCCCGGTTCTTCAACCAGCTCTTCTCAGGATTAGATCCCCA
TGCTCTGGCCGGGCGCATCATTACGGAGAGCCTCAATACCAGCCAGTACACATATGAGATTGCC
CCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAAGAAACTCCGTGCCCTTGTGGGCTGGAACA
CTGGGGATGGGGTCTTCTGTCCTGGTGGTTCCATCTCTAACATGTACGCCATAAACCTGGCCCG
CTTTCAGCGCTACCCAGACTGCAAGCAGAGGGGCCTCCGGGCCCTGCCACCCTTGGCCCTCTTC
ACTTCAAAGGAGTGCCACTACTCCATCACCAAGGGAGCTGCTTTTCTGGGACTTGGCACCGACA
GTGTCCGAGTGGTCAAGGCTGATGAGAGAGGGAAGATGATCCCTGAGGATCTGGAGAGGCAGAT
CAGTCTGGCAGAGGCTGAGGGCTCGGTGCCATTTCTGGTCAGTGCCACCTCTGGTACCACCGTG
CTAGGGGCCTTTGACCCCCTGGATGCAATTGCCGATGTTTGCCAGCGTCACGGGCTGTGGTTAC
ACGTGGATGCCGCCTGGGGTGGGAGCGTCCTGCTGTCCCGGACACACAGGCATCTCCTGGATGG
GATCCAGAGGGCTGACTCCGTGGCCTGGAACCCTCACAAGCTTCTCGCCGCGGGGCTGCAGTGC
TCTGCTCTTCTTCTCCGGGACACCTCGAACCTGCTCAAGCGCTGCCACGGGTCCCAGGCCAGCT
ACCTCTTCCAGCAAGACAAGTTCTACAACGTGGCTCTGGACACCGGAGACAAGGTGGTGCAGTG
TGGCCGCCGCGTGGACTGTCTGAAGCTGTGGCTCATGTGGAAGGCGCAGGGTGGGCAAGGGCTG
GAGTGGCGCATCGACCAGGCCTTTGCTCTCACTCGGTACTTGGTGGAGGAGATAAAAAAGCGGG
AAGGATTTGAGTTGGTCATGGAGCCCGAGTTCGTCAACGTGTGCTTCTGGTTTGTGCCTCCCAG
CCTGCGGGGGAAGAAGGAGAGCCCAGATTACAGCCAGAGGCTGTCTCAGGTGGCCCCTGTGCTC
AAGGAGCGCATGGTGAAGAAGGGAACCATGATGATCGGCTACCAGCCCCATGGGACCCGGGCCA
ACTTCTTCCGAATGGTGGTGGCCAACCCCATACTGGTCCAGGCCGATATAGACTTCCTTCTGGG
CGAGCTGGAGCGTCTGGGCCAGGACCTGTGAGCTGCTTCCTCTCTCTGCCCCACCCAAGCTCTG
CATAAGCTCCTGGGTTCCCAAAAGCGACCTTTCTAGGAAACAGTGGCCTTGACTGTGTGAGCCC
CCACACACTAACTCTCCTAGCTAAGTATTGGCTGCCAGGACGGTGTCTAAGCACACTACAGTCT
GTTCTTACGAAATGTGCTTCTTTTAAGTCGGTCATAGTGGTACACACCGTTAATACCAGCACTG
GGGAGGCAGAGGCAGACACAAGCAGATCTCTTGAGTTTGAGGCCAGCCTGGTCTACAGAGCTGG
CCTACACAGAAAAAAAACCTGTCTCAAAAAAAAAGAAAGGAAGGAAGAAAGAAAGGAAAAGAAA
GAAATATTTTTCATTAAGATTATGTCTATAAAAAATTGTTATTAATATGAGAGATATGGTACGA
TGTATTAAGAAAGCTAGATATGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCCCTTGCCTAGGA
AGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCACAAAAAAAAAAAAAAAAA
AAAGAAAGCTAGATATGAGTTTATATATCATGGTATCTGAGTTAAACTAAAAAAAAAAAATACA
TAGGAAAAGGCGGTGAGTGGAACTGTGCCAAAGGTCAGCAGTTTTCCCTGGAAGAGGATAACAG
GCTGTTCCTAAGTCAGCCTCTCAGACCTTCCCTGCTTCCCCACTTTATTATGTAACCACATCAC
CTACTTCTGAGATACAACAATAAAGCTTTGTCACTATA

hide sequence

RefSeq Acc Id:

XM_006242440 ⟹ XP_006242502

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,308,571 - 133,337,910 (-)	NCBI
Rnor_6.0	7	143,781,520 - 143,810,880 (-)	NCBI
Rnor_5.0	7	141,579,061 - 141,608,043 (-)	NCBI

Sequence:

show sequence

GAAAGGGAGATGAGGCCCTCAGGTGCAACATCCTCAGGCCATACACCGAGAGAAGCTCTCTCAA
CTTATTTTGCTGGACGTTCTGAAGCTCGAAAGGAGGACATGAGTCAAGAGCTTTCTTTCTAGGT
CAGTAGAAGAAATTGGCCTTCTGGGCCAGAACAAACAGCCAACAGGAGCAAAAGTAAGTTGGGC
CTCCTATAGAGAGGATCTGCCAACGGAGTTAGTGCTGGGATTTGCCATCTTAGGAACGGAAGAA
GGGGGCGGAGGCCCTTTGGGGCTTTTGTGCGGAGTGGGCCGGCCTGCAAAGCTGGCACTCCACA
GACGAGGGCAGAACCGTGGTGGGAGGAAGCTCGGGGGCCTCCGCCGAGCACCGAGGTGGCTGGC
AGTGCCCGCACGTGAGCGTCACTCGGAGCTCCCCCGAAGTCCTGTTCTGAGAAGTCCATTGTGT
ACCTTGTCACCAGCGCGTCTGAACCCTCTCTGAACCTTCCTGAAGCTGGAAGATTTCACCCTGA
TGGCTGACTCAAAACCACTCAGAACCCTGGATGGGGACCCTGTGGCTGTGGAGGCTTTGCTCCG
GGACGTGTTTGGGATTGTCGTAGATGAGGCCATTCGGAAGGGGACCAATGCCTCTGAGAAGGTC
TGCGAATGGAAGGAGCCTGAAGAGCTCAAGCAGCTGCTGGACTTGGAGCTGCAGAGCCAGGGCG
AGTCTAGGGAGCGGATCCTGGAGCGCTGCCGGGCTGTGATTCATTACAGTGTCAAGACTGGTCA
CCCCCGGTTCTTCAACCAGCTCTTCTCAGGATTAGATCCCCATGCTCTGGCCGGGCGCATCATT
ACGGAGAGCCTCAATACCAGCCAGTACACATATGAGATTGCCCCCGTGTTTGTGCTCATGGAAG
AGGAGGTGCTGAAGAAACTCCGTGCCCTTGTGGGCTGGAACACTGGGGATGGGGTCTTCTGTCC
TGGTGGTTCCATCTCTAACATGTACGCCATAAACCTGGCCCGCTTTCAGCGCTACCCAGACTGC
AAGCAGAGGGGCCTCCGGGCCCTGCCACCCTTGGCCCTCTTCACTTCAAAGGAGTGCCACTACT
CCATCACCAAGGGAGCTGCTTTTCTGGGACTTGGCACCGACAGTGTCCGAGTGGTCAAGGCTGA
TGAGAGAGGGAAGATGATCCCTGAGGATCTGGAGAGGCAGATCAGTCTGGCAGAGGCTGAGGGC
TCGGTGCCATTTCTGGTCAGTGCCACCTCTGGTACCACCGTGCTAGGGGCCTTTGACCCCCTGG
ATGCAATTGCCGATGTTTGCCAGCGTCACGGGCTGTGGTTACACGTGGATGCCGCCTGGGGTGG
GAGCGTCCTGCTGTCCCGGACACACAGGCATCTCCTGGATGGGATCCAGAGGGCTGACTCCGTG
GCCTGGAACCCTCACAAGCTTCTCGCCGCGGGGCTGCAGTGCTCTGCTCTTCTTCTCCGGGACA
CCTCGAACCTGCTCAAGCGCTGCCACGGGTCCCAGGCCAGCTACCTCTTCCAGCAAGACAAGTT
CTACAACGTGGCTCTGGACACCGGAGACAAGGTGGTGCAGTGTGGCCGCCGCGTGGACTGTCTG
AAGCTGTGGCTCATGTGGAAGGCGCAGGGTGGGCAAGGGCTGGAGTGGCGCATCGACCAGGCCT
TTGCTCTCACTCGGTACTTGGTGGAGGAGATAAAAAAGCGGGAAGGATTTGAGTTGGTCATGGA
GCCCGAGTTCGTCAACGTGTGCTTCTGGTTTGTGCCTCCCAGCCTGCGGGGGAAGAAGGAGAGC
CCAGATTACAGCCAGAGGCTGTCTCAGGTGGCCCCTGTGCTCAAGGAGCGCATGGTGAAGAAGG
GAACCATGATGATCGGCTACCAGCCCCATGGGACCCGGGCCAACTTCTTCCGAATGGTGGTGGC
CAACCCCATACTGGTCCAGGCCGATATAGACTTCCTTCTGGGCGAGCTGGAGCGTCTGGGCCAG
GACCTGTGAGCTGCTTCCTCTCTCTGCCCCACCCAAGCTCTGCATAAGCTCCTGGGTTCCCAAA
AGCGACCTTTCTAGGAAACAGTGGCCTTGACTGTGTGAGCCCCCACACACTAACTCTCCTAGCT
AAGTATTGGCTGCCAGGACGGTGTCTAAGCACACTACAGTCTGTTCTTACGAAATGTGCTTCTT
TTAAGTCGGTCATAGTGGTACACACCGTTAATACCAGCACTGGGGAGGCAGAGGCAGACACAAG
CAGATCTCTTGAGTTTGAGGCCAGCCTGGTCTACAGAGCTGGCCTACACAGAAAAAAAACCTGT
CTCAAAAAAAAAGAAAGGAAGGAAGAAAGAAAGGAAAAGAAAGAAATATTTTTCATTAAGATTA
TGTCTATAAAAAATTGTTATTAATATGAGAGATATGGTACGATGTATTAAGAAAGCTAGATATG
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCCCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGT
CCCCAGCTCCGAAAAAAAGAACCACAAAAAAAAAAAAAAAAAAAAGAAAGCTAGATATGAGTTT
ATATATCATGGTATCTGAGTTAAACTAAAAAAAAAAAATACATAGGAAAAGGCGGTGAGTGGAA
CTGTGCCAAAGGTCAGCAGTTTTCCCTGGAAGAGGATAACAGGCTGTTCCTAAGTCAGCCTCTC
AGACCTTCCCTGCTTCCCCACTTTATTATGTAACCACATCACCTACTTCTGAGATACAACAATA
AAGCTTTGTCACTATA

hide sequence

RefSeq Acc Id:

XM_039079834 ⟹ XP_038935762

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,308,571 - 133,336,708 (-)	NCBI

RefSeq Acc Id:

XM_039079835 ⟹ XP_038935763

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,308,571 - 133,337,132 (-)	NCBI

RefSeq Acc Id:

XM_039079836 ⟹ XP_038935764

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,308,571 - 133,322,342 (-)	NCBI

RefSeq Acc Id:

XM_039079837 ⟹ XP_038935765

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,308,571 - 133,321,088 (-)	NCBI

RefSeq Acc Id:

XM_039079838 ⟹ XP_038935766

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,308,571 - 133,337,914 (-)	NCBI

RefSeq Acc Id:

XM_039079839 ⟹ XP_038935767

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,308,571 - 133,336,708 (-)	NCBI

RefSeq Acc Id:

XR_005486716

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,308,571 - 133,321,088 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_068518	(Get FASTA)	NCBI Sequence Viewer
	XP_006242500	(Get FASTA)	NCBI Sequence Viewer
	XP_006242501	(Get FASTA)	NCBI Sequence Viewer
	XP_006242502	(Get FASTA)	NCBI Sequence Viewer
	XP_038935762	(Get FASTA)	NCBI Sequence Viewer
	XP_038935763	(Get FASTA)	NCBI Sequence Viewer
	XP_038935764	(Get FASTA)	NCBI Sequence Viewer
	XP_038935765	(Get FASTA)	NCBI Sequence Viewer
	XP_038935766	(Get FASTA)	NCBI Sequence Viewer
	XP_038935767	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB18332	(Get FASTA)	NCBI Sequence Viewer
	AAC42063	(Get FASTA)	NCBI Sequence Viewer
	AAD47908	(Get FASTA)	NCBI Sequence Viewer
	AAD47909	(Get FASTA)	NCBI Sequence Viewer
	AAH81804	(Get FASTA)	NCBI Sequence Viewer
	ACF07922	(Get FASTA)	NCBI Sequence Viewer
	ACG80587	(Get FASTA)	NCBI Sequence Viewer
	CAA63868	(Get FASTA)	NCBI Sequence Viewer
	CAB54560	(Get FASTA)	NCBI Sequence Viewer
	CAB54561	(Get FASTA)	NCBI Sequence Viewer
	EDL86857	(Get FASTA)	NCBI Sequence Viewer
	EDL86858	(Get FASTA)	NCBI Sequence Viewer
	EDL86859	(Get FASTA)	NCBI Sequence Viewer
	EDL86860	(Get FASTA)	NCBI Sequence Viewer
	EDL86861	(Get FASTA)	NCBI Sequence Viewer
	Q64611	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_068518 ⟸ NM_021750

- UniProtKB:

Q9R1F6 (UniProtKB/Swiss-Prot), Q64611 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MADSKPLRTLDGDPVAVEALLRDVFGIVVDEAIRKGTNASEKVCEWKEPEELKQLLDLELQSQG
ESRERILERCRAVIHYSVKTGHPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLME
EEVLKKLRALVGWNTGDGVFCPGGSISNMYAINLARFQRYPDCKQRGLRALPPLALFTSKECHY
SITKGAAFLGLGTDSVRVVKADERGKMIPEDLERQISLAEAEGSVPFLVSATSGTTVLGAFDPL
DAIADVCQRHGLWLHVDAAWGGSVLLSRTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLRD
TSNLLKRCHGSQASYLFQQDKFYNVALDTGDKVVQCGRRVDCLKLWLMWKAQGGQGLEWRIDQA
FALTRYLVEEIKKREGFELVMEPEFVNVCFWFVPPSLRGKKESPDYSQRLSQVAPVLKERMVKK
GTMMIGYQPHGTRANFFRMVVANPILVQADIDFLLGELERLGQDL

hide sequence

RefSeq Acc Id:	XP_006242500 ⟸ XM_006242438
- Peptide Label:	isoform X1
- UniProtKB:	Q9R1F6 (UniProtKB/Swiss-Prot), Q64611 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MADSKPLRTLDGDPVAVEALLRDVFGIVVDEAIRKGTNASEKVCEWKEPEELKQLLDLELQSQG ESRERILERCRAVIHYSVKTGHPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLME EEVLKKLRALVGWNTGDGVFCPGGSISNMYAINLARFQRYPDCKQRGLRALPPLALFTSKECHY SITKGAAFLGLGTDSVRVVKADERGKMIPEDLERQISLAEAEGSVPFLVSATSGTTVLGAFDPL DAIADVCQRHGLWLHVDAAWGGSVLLSRTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLRD TSNLLKRCHGSQASYLFQQDKFYNVALDTGDKVVQCGRRVDCLKLWLMWKAQGGQGLEWRIDQA FALTRYLVEEIKKREGFELVMEPEFVNVCFWFVPPSLRGKKESPDYSQRLSQVAPVLKERMVKK GTMMIGYQPHGTRANFFRMVVANPILVQADIDFLLGELERLGQDL hide sequence

RefSeq Acc Id:	XP_006242502 ⟸ XM_006242440
- Peptide Label:	isoform X1
- UniProtKB:	Q9R1F6 (UniProtKB/Swiss-Prot), Q64611 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MADSKPLRTLDGDPVAVEALLRDVFGIVVDEAIRKGTNASEKVCEWKEPEELKQLLDLELQSQG ESRERILERCRAVIHYSVKTGHPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLME EEVLKKLRALVGWNTGDGVFCPGGSISNMYAINLARFQRYPDCKQRGLRALPPLALFTSKECHY SITKGAAFLGLGTDSVRVVKADERGKMIPEDLERQISLAEAEGSVPFLVSATSGTTVLGAFDPL DAIADVCQRHGLWLHVDAAWGGSVLLSRTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLRD TSNLLKRCHGSQASYLFQQDKFYNVALDTGDKVVQCGRRVDCLKLWLMWKAQGGQGLEWRIDQA FALTRYLVEEIKKREGFELVMEPEFVNVCFWFVPPSLRGKKESPDYSQRLSQVAPVLKERMVKK GTMMIGYQPHGTRANFFRMVVANPILVQADIDFLLGELERLGQDL hide sequence

RefSeq Acc Id:	XP_006242501 ⟸ XM_006242439
- Peptide Label:	isoform X1
- UniProtKB:	Q9R1F6 (UniProtKB/Swiss-Prot), Q64611 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MADSKPLRTLDGDPVAVEALLRDVFGIVVDEAIRKGTNASEKVCEWKEPEELKQLLDLELQSQG ESRERILERCRAVIHYSVKTGHPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLME EEVLKKLRALVGWNTGDGVFCPGGSISNMYAINLARFQRYPDCKQRGLRALPPLALFTSKECHY SITKGAAFLGLGTDSVRVVKADERGKMIPEDLERQISLAEAEGSVPFLVSATSGTTVLGAFDPL DAIADVCQRHGLWLHVDAAWGGSVLLSRTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLRD TSNLLKRCHGSQASYLFQQDKFYNVALDTGDKVVQCGRRVDCLKLWLMWKAQGGQGLEWRIDQA FALTRYLVEEIKKREGFELVMEPEFVNVCFWFVPPSLRGKKESPDYSQRLSQVAPVLKERMVKK GTMMIGYQPHGTRANFFRMVVANPILVQADIDFLLGELERLGQDL hide sequence

RefSeq Acc Id:

ENSRNOP00000016205 ⟸ ENSRNOT00000016205

RefSeq Acc Id:

ENSRNOP00000073508 ⟸ ENSRNOT00000079678

RefSeq Acc Id:	XP_038935766 ⟸ XM_039079838
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2Q7U2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935763 ⟸ XM_039079835
- Peptide Label:	isoform X1
- UniProtKB:	Q9R1F6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038935767 ⟸ XM_039079839
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038935762 ⟸ XM_039079834
- Peptide Label:	isoform X1
- UniProtKB:	Q9R1F6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038935764 ⟸ XM_039079836
- Peptide Label:	isoform X1
- UniProtKB:	Q9R1F6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038935765 ⟸ XM_039079837
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2Q7U2 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000087863 ⟸ ENSRNOT00000102299

RefSeq Acc Id:

ENSRNOP00000080923 ⟸ ENSRNOT00000113521

RefSeq Acc Id:

ENSRNOP00000093937 ⟸ ENSRNOT00000110884

RefSeq Acc Id:

ENSRNOP00000085105 ⟸ ENSRNOT00000117956

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q64611-F1-model_v2	AlphaFold	Q64611	1-493	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695692

Promoter ID:

EPDNEW_R6217

Type:

initiation region

Name:

Csad_1

Description:

cysteine sulfinic acid decarboxylase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	143,794,012 - 143,794,072	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621030	AgrOrtholog
BioCyc Gene	G2FUF-31947	BioCyc
BioCyc Pathway	PWY-5331 [taurine biosynthesis I]	BioCyc
Ensembl Genes	ENSRNOG00000011573	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000016205	ENTREZGENE
	ENSRNOP00000016205.5	UniProtKB/TrEMBL
	ENSRNOP00000073508	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000073508.2	UniProtKB/Swiss-Prot
	ENSRNOP00000080923	ENTREZGENE
	ENSRNOP00000080923.1	UniProtKB/TrEMBL
	ENSRNOP00000085105.1	UniProtKB/TrEMBL
	ENSRNOP00000087863	ENTREZGENE
	ENSRNOP00000087863.1	UniProtKB/TrEMBL
	ENSRNOP00000093937.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016205	ENTREZGENE
	ENSRNOT00000016205.7	UniProtKB/TrEMBL
	ENSRNOT00000079678	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000079678.2	UniProtKB/Swiss-Prot
	ENSRNOT00000102299	ENTREZGENE
	ENSRNOT00000102299.1	UniProtKB/TrEMBL
	ENSRNOT00000110884.1	UniProtKB/TrEMBL
	ENSRNOT00000113521	ENTREZGENE
	ENSRNOT00000113521.1	UniProtKB/TrEMBL
	ENSRNOT00000117956.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.640.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.90.1150.10	UniProtKB/TrEMBL
	3.90.1150.170	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7106840	IMAGE-MGC_LOAD
InterPro	PyrdxlP-dep_de-COase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PyrdxlP-dep_Trfase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PyrdxlP-dep_Trfase_major	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PyrdxlP-dep_Trfase_small	UniProtKB/TrEMBL
	Pyridoxal-P_BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:60356	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93461	IMAGE-MGC_LOAD
NCBI Gene	60356	ENTREZGENE
PANTHER	CYSTEINE SULFINIC ACID DECARBOXYLASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GLUTAMATE DECARBOXYLASE-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Pyridoxal_deC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Csad	PhenoGen
PROSITE	DDC_GAD_HDC_YDC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF53383	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K5P7_RAT	UniProtKB/TrEMBL
	A0A8I5ZQK7_RAT	UniProtKB/TrEMBL
	A0A8I6A6P6_RAT	UniProtKB/TrEMBL
	A0A8I6AMR0_RAT	UniProtKB/TrEMBL
	A0A8I6GBN4_RAT	UniProtKB/TrEMBL
	A0A8L2Q7U2	ENTREZGENE, UniProtKB/TrEMBL
	B3VPA7_RAT	UniProtKB/TrEMBL
	B5LSW7_RAT	UniProtKB/TrEMBL
	CSAD_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q9R1F5_RAT	UniProtKB/TrEMBL
	Q9R1F6	ENTREZGENE
UniProt Secondary	Q546T1	UniProtKB/Swiss-Prot
	Q64577	UniProtKB/Swiss-Prot
	Q9R1F6	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-01-20	Csad	cysteine sulfinic acid decarboxylase		cysteine-sulfinate decarboxylase	Name updated	1299863	APPROVED
2002-08-07	Csad	cysteine-sulfinate decarboxylase			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_regulation	expression and activity are inhibited by triiodothyronine and estrogen	632596

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)