Asb8 (ankyrin repeat and SOCS box-containing 8) - Rat Genome Database

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Gene: Asb8 (ankyrin repeat and SOCS box-containing 8) Rattus norvegicus
Analyze
Symbol: Asb8
Name: ankyrin repeat and SOCS box-containing 8
RGD ID: 1309246
Description: Predicted to be involved in intracellular signal transduction and protein ubiquitination. Orthologous to human ASB8 (ankyrin repeat and SOCS box containing 8); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; diuron.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ankyrin repeat and SOCS box protein 8; ankyrin repeat and SOCS box-containing protein 8; LOC315287
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27129,261,397 - 129,297,492 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,261,397 - 129,297,485 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7131,058,093 - 131,065,688 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07133,283,634 - 133,291,229 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07133,196,105 - 133,203,700 (-)NCBIRnor_WKY
Rnor_6.07139,724,337 - 139,760,410 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7139,724,346 - 139,734,568 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07138,859,481 - 138,869,943 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47136,848,245 - 136,855,784 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17136,924,681 - 136,934,885 (-)NCBI
Celera7125,753,211 - 125,760,752 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Asb8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27129,261,397 - 129,297,492 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,261,397 - 129,297,485 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7131,058,093 - 131,065,688 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07133,283,634 - 133,291,229 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07133,196,105 - 133,203,700 (-)NCBIRnor_WKY
Rnor_6.07139,724,337 - 139,760,410 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7139,724,346 - 139,734,568 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07138,859,481 - 138,869,943 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47136,848,245 - 136,855,784 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17136,924,681 - 136,934,885 (-)NCBI
Celera7125,753,211 - 125,760,752 (-)NCBICelera
Cytogenetic Map7q36NCBI
ASB8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,147,789 - 48,157,515 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1248,147,789 - 48,181,213 (-)EnsemblGRCh38hg38GRCh38
GRCh371248,541,572 - 48,551,298 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361246,827,839 - 46,837,644 (-)NCBINCBI36Build 36hg18NCBI36
Build 341246,827,840 - 46,837,644NCBI
Celera1247,339,076 - 47,348,938 (-)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1245,573,053 - 45,582,734 (-)NCBIHuRef
CHM1_11248,507,009 - 48,516,816 (-)NCBICHM1_1
T2T-CHM13v2.01248,109,134 - 48,118,862 (-)NCBIT2T-CHM13v2.0
Asb8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,032,518 - 98,063,476 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1598,032,518 - 98,063,506 (-)EnsemblGRCm39 Ensembl
GRCm381598,134,637 - 98,165,596 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,134,637 - 98,165,625 (-)EnsemblGRCm38mm10GRCm38
MGSCv371597,965,071 - 97,996,009 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361597,962,674 - 97,973,678 (-)NCBIMGSCv36mm8
Celera15100,264,279 - 100,294,933 (-)NCBICelera
Cytogenetic Map15F1NCBI
Asb8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555007,021,895 - 7,049,424 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555007,021,895 - 7,051,459 (-)NCBIChiLan1.0ChiLan1.0
ASB8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11241,448,039 - 41,457,662 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1241,448,039 - 41,457,662 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01240,572,795 - 40,582,635 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ASB8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,586,933 - 6,619,240 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,610,633 - 6,619,089 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2739,687,518 - 39,695,739 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0276,654,449 - 6,686,775 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl276,678,518 - 6,686,757 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1276,591,903 - 6,624,300 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0276,626,671 - 6,659,077 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02739,976,130 - 39,984,347 (-)NCBIUU_Cfam_GSD_1.0
Asb8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494567,078,283 - 67,130,344 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365126,034,469 - 6,042,827 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASB8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl578,526,105 - 78,534,474 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1578,526,105 - 78,534,810 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2581,696,303 - 81,728,537 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ASB8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11144,381,134 - 44,387,791 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1144,381,466 - 44,388,071 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037201,990,625 - 201,998,466 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asb8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248164,121,562 - 4,131,713 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248164,121,554 - 4,130,034 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH131407  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27129,261,493 - 129,261,703 (+)MAPPERmRatBN7.2
Rnor_6.07139,724,434 - 139,724,643NCBIRnor6.0
Rnor_5.07138,859,578 - 138,859,787UniSTSRnor5.0
RGSC_v3.47136,848,342 - 136,848,551UniSTSRGSC3.4
Celera7125,753,308 - 125,753,517UniSTS
RH 3.4 Map71088.4UniSTS
Cytogenetic Map7q36UniSTS
RH138842  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27129,268,222 - 129,268,359 (+)MAPPERmRatBN7.2
Rnor_6.07139,731,163 - 139,731,299NCBIRnor6.0
Rnor_5.07138,866,510 - 138,866,646UniSTSRnor5.0
RGSC_v3.47136,855,071 - 136,855,207UniSTSRGSC3.4
Celera7125,760,039 - 125,760,175UniSTS
RH 3.4 Map71088.3UniSTS
Cytogenetic Map7q36UniSTS
BF416235  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27129,270,727 - 129,270,974 (+)MAPPERmRatBN7.2
Rnor_6.07139,733,667 - 139,733,913NCBIRnor6.0
Rnor_5.07138,869,014 - 138,869,260UniSTSRnor5.0
RGSC_v3.47136,857,575 - 136,857,821UniSTSRGSC3.4
Celera7125,762,540 - 125,762,786UniSTS
RH 3.4 Map71088.7UniSTS
Cytogenetic Map7q36UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:460
Count of miRNA genes:250
Interacting mature miRNAs:290
Transcripts:ENSRNOT00000013704
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000013704   ⟹   ENSRNOP00000013704
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,261,397 - 129,271,654 (-)Ensembl
Rnor_6.0 Ensembl7139,724,346 - 139,731,876 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079377   ⟹   ENSRNOP00000069835
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,261,397 - 129,297,485 (-)Ensembl
Rnor_6.0 Ensembl7139,725,430 - 139,734,568 (-)Ensembl
RefSeq Acc Id: NM_001108109   ⟹   NP_001101579
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27129,261,397 - 129,268,936 (-)NCBI
Rnor_6.07139,724,337 - 139,731,876 (-)NCBI
Rnor_5.07138,859,481 - 138,869,943 (-)NCBI
RGSC_v3.47136,848,245 - 136,855,784 (-)RGD
Celera7125,753,211 - 125,760,752 (-)RGD
Sequence:
RefSeq Acc Id: XM_006242328   ⟹   XP_006242390
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27129,261,397 - 129,271,698 (-)NCBI
Rnor_6.07139,724,337 - 139,734,597 (-)NCBI
Rnor_5.07138,859,481 - 138,869,943 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006242329   ⟹   XP_006242391
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27129,261,397 - 129,271,698 (-)NCBI
Rnor_6.07139,724,337 - 139,734,596 (-)NCBI
Rnor_5.07138,859,481 - 138,869,943 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594889   ⟹   XP_017450378
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27129,261,397 - 129,297,492 (-)NCBI
Rnor_6.07139,724,337 - 139,760,410 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594890   ⟹   XP_017450379
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27129,261,397 - 129,271,671 (-)NCBI
Rnor_6.07139,724,337 - 139,734,593 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001101579   ⟸   NM_001108109
- UniProtKB: B5DF17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242390   ⟸   XM_006242328
- Peptide Label: isoform X2
- UniProtKB: B5DF17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242391   ⟸   XM_006242329
- Peptide Label: isoform X2
- UniProtKB: B5DF17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450378   ⟸   XM_017594889
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017450379   ⟸   XM_017594890
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000069835   ⟸   ENSRNOT00000079377
RefSeq Acc Id: ENSRNOP00000013704   ⟸   ENSRNOT00000013704
Protein Domains
SOCS box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DF17-F1-model_v2 AlphaFold B5DF17 1-288 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695634
Promoter ID:EPDNEW_R6147
Type:initiation region
Name:Asb8_1
Description:ankyrin repeat and SOCS box-containing 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07139,734,543 - 139,734,603EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309246 AgrOrtholog
BioCyc Gene G2FUF-32158 BioCyc
Ensembl Genes ENSRNOG00000010099 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000013704 ENTREZGENE
  ENSRNOP00000013704.4 UniProtKB/TrEMBL
  ENSRNOP00000069835 ENTREZGENE
  ENSRNOP00000069835.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013704 ENTREZGENE
  ENSRNOT00000013704.8 UniProtKB/TrEMBL
  ENSRNOT00000079377 ENTREZGENE
  ENSRNOT00000079377.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  ASB8_SOCS UniProtKB/TrEMBL
  SOCS_box_dom_like UniProtKB/TrEMBL
  SOCS_C UniProtKB/TrEMBL
KEGG Report rno:315287 UniProtKB/TrEMBL
NCBI Gene 315287 ENTREZGENE
Pfam Ank_2 UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
PhenoGen Asb8 PhenoGen
PROSITE ANK_REPEAT UniProtKB/TrEMBL
  SOCS UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
  SSF158235 UniProtKB/TrEMBL
UniProt A0A0G2JWD3_RAT UniProtKB/TrEMBL
  B5DF17 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-20 Asb8  ankyrin repeat and SOCS box-containing 8  Asb8  ankyrin repeat and SOCS box-containing protein 8  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Asb8  ankyrin repeat and SOCS box-containing protein 8   Asb8_predicted  ankyrin repeat and SOCS box-containing protein 8 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Asb8_predicted  ankyrin repeat and SOCS box-containing protein 8 (predicted)      Symbol and Name status set to approved 70820 APPROVED