Atf1 (activating transcription factor 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Atf1 (activating transcription factor 1) Rattus norvegicus
Analyze
Symbol: Atf1
Name: activating transcription factor 1
RGD ID: 1307360
Description: Enables DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in several processes, including positive regulation of neuron projection development; positive regulation of nucleobase-containing compound metabolic process; and response to cobalt ion. Located in nucleus. Part of transcription regulator complex. Biomarker of polycystic kidney disease. Orthologous to human ATF1 (activating transcription factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Atf-1; cyclic AMP-dependent transcription factor ATF-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27131,361,962 - 131,404,677 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7131,362,450 - 131,404,670 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7133,164,873 - 133,207,777 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07135,390,454 - 135,433,359 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07135,302,985 - 135,345,888 (+)NCBIRnor_WKY
Rnor_6.07141,882,261 - 141,924,790 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7141,882,251 - 141,924,788 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07139,692,651 - 139,735,616 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,971,063 - 139,014,690 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17139,039,700 - 139,089,879 (+)NCBI
Celera7127,839,929 - 127,882,623 (+)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-anisomycin  (ISO)
(S)-amphetamine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
6-propyl-2-thiouracil  (EXP)
arachidonic acid  (ISO)
Aroclor 1254  (ISO)
atenolol  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bucladesine  (ISO)
cadmium dichloride  (EXP,ISO)
cobalt dichloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
desferrioxamine B  (EXP)
dicrotophos  (ISO)
dioxygen  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
genistein  (ISO)
gentamycin  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
homocysteine  (EXP)
hydrogen peroxide  (ISO)
ketoconazole  (ISO)
L-mimosine  (EXP)
manganese atom  (EXP)
manganese(0)  (EXP)
manganese(II) chloride  (EXP)
mycophenolic acid  (ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (ISO)
N-methyl-N-nitrosourea  (ISO)
nefazodone  (EXP)
paracetamol  (ISO)
phorone  (EXP)
proanthocyanidin  (ISO)
prostaglandin E2  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 203580  (EXP,ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
tebufenpyrad  (ISO)
tetrachloromethane  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
tyrphostin AG 1478  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
Xamoterol  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ATF-1 mediates protease-activated receptor-1 but not receptor tyrosine kinase-induced DNA synthesis in vascular smooth muscle cells.PG - Ghosh SK, etal., J Biol Chem 2002 Jun 14;277(24):21325-31.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Red wine polyphenols inhibit proliferation of vascular smooth muscle cells and downregulate expression of cyclin A gene. Iijima K, etal., Circulation. 2000 Feb 22;101(7):805-11.
5. The cAMP-response element mediates induction of secretogranin II by CHX and FSK in GH4C1 cells. Jones LC and Scammell JG, Am J Physiol. 1998 Apr;274(4 Pt 1):E656-64.
6. Myocyte enhancer factor 2B is involved in the inducible expression of NOX1/NADPH oxidase, a vascular superoxide-producing enzyme. Katsuyama M, etal., FEBS J. 2007 Oct;274(19):5128-36. Epub 2007 Sep 5.
7. CREB-AP1 protein complexes regulate transcription of the collagen XXIV gene (Col24a1) in osteoblasts. Matsuo N, etal., J Biol Chem. 2006 Mar 3;281(9):5445-52. Epub 2005 Dec 22.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Transforming growth factor-beta1 down-regulation of major histocompatibility complex class I in thyrocytes: coordinate regulation of two separate elements by thyroid-specific as well as ubiquitous transcription factors. Napolitano G, etal., Mol Endocrinol. 2000 Apr;14(4):486-505.
10. GOA pipeline RGD automated data pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Dominant negative ATF1 blocks cyclic AMP-induced neurite outgrowth in PC12D cells. Shimomura A, etal., J Neurochem. 1998 Mar;70(3):1029-34.
13. Transfection of K-rasAsp12 cDNA markedly elevates IL-1beta- and lipopolysaccharide-mediated inducible nitric oxide synthase expression in rat intestinal epithelial cells. Takahashi M, etal., Oncogene. 2003 Oct 23;22(48):7667-76.
14. Cyclic nucleotide signaling in polycystic kidney disease. Wang X, etal., Kidney Int. 2010 Jan;77(2):129-40. Epub 2009 Nov 18.
15. Protection from oxidative stress-induced apoptosis in cortical neuronal cultures by iron chelators is associated with enhanced DNA binding of hypoxia-inducible factor-1 and ATF-1/CREB and increased expression of glycolytic enzymes, p21(waf1/cip1), and erythropoietin. Zaman K, etal., J Neurosci. 1999 Nov 15;19(22):9821-30.
16. Ref-1/Ape is critical for formation of the hypoxia-inducible transcriptional complex on the hypoxic response element of the rat pulmonary artery endothelial cell VEGF gene. Ziel KA, etal., FASEB J. 2004 Jun;18(9):986-8. Epub 2004 Apr 14.
Additional References at PubMed
PMID:1655749   PMID:8798441   PMID:8889548   PMID:11354513   PMID:12477932   PMID:12871976   PMID:15710429   PMID:20102225   PMID:21045134  


Genomics

Comparative Map Data
Atf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27131,361,962 - 131,404,677 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7131,362,450 - 131,404,670 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7133,164,873 - 133,207,777 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07135,390,454 - 135,433,359 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07135,302,985 - 135,345,888 (+)NCBIRnor_WKY
Rnor_6.07141,882,261 - 141,924,790 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7141,882,251 - 141,924,788 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07139,692,651 - 139,735,616 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,971,063 - 139,014,690 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17139,039,700 - 139,089,879 (+)NCBI
Celera7127,839,929 - 127,882,623 (+)NCBICelera
Cytogenetic Map7q36NCBI
ATF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381250,763,459 - 50,821,162 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1250,763,710 - 50,821,162 (+)EnsemblGRCh38hg38GRCh38
GRCh371251,157,884 - 51,214,945 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361249,444,086 - 49,501,174 (+)NCBINCBI36Build 36hg18NCBI36
Build 341249,444,127 - 49,500,327NCBI
Celera1249,959,051 - 50,016,446 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1248,190,680 - 48,247,722 (+)NCBIHuRef
CHM1_11251,124,299 - 51,181,471 (+)NCBICHM1_1
T2T-CHM13v2.01250,727,262 - 50,784,323 (+)NCBIT2T-CHM13v2.0
Atf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915100,125,740 - 100,159,129 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15100,125,700 - 100,159,125 (+)EnsemblGRCm39 Ensembl
GRCm3815100,227,859 - 100,261,248 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15100,227,819 - 100,261,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715100,058,290 - 100,091,679 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615100,055,893 - 100,089,282 (+)NCBIMGSCv36mm8
Celera15102,384,029 - 102,412,594 (+)NCBICelera
Cytogenetic Map15F1NCBI
Atf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555471,257,944 - 1,299,519 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555471,263,288 - 1,299,525 (+)NCBIChiLan1.0ChiLan1.0
ATF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11238,832,318 - 38,888,157 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1238,832,318 - 38,888,204 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01237,930,383 - 37,988,476 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ATF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,904,635 - 3,993,387 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,877,355 - 3,992,904 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2742,264,552 - 42,352,571 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,965,558 - 4,040,154 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl273,965,553 - 4,040,102 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,918,858 - 4,006,920 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0273,906,679 - 3,994,477 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02742,659,869 - 42,734,156 (+)NCBIUU_Cfam_GSD_1.0
Atf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494564,738,987 - 64,785,934 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365128,379,797 - 8,426,186 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365128,379,802 - 8,426,574 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl516,618,643 - 16,681,380 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1516,619,130 - 16,681,391 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2517,197,022 - 17,198,589 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,992,068 - 47,049,142 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1147,003,621 - 47,049,381 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037199,054,422 - 199,112,143 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248161,527,620 - 1,596,066 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248161,529,082 - 1,592,932 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atf1
227 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:107
Count of miRNA genes:94
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000055390
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat

Markers in Region
D7Got138  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.07139,739,694 - 139,739,840NCBIRnor5.0
RGSC_v3.47139,019,268 - 139,019,428UniSTSRGSC3.4
RGSC_v3.47139,019,267 - 139,019,428RGDRGSC3.4
RGSC_v3.17139,095,705 - 139,095,865RGD
Celera7127,887,019 - 127,887,169UniSTS
RH 3.4 Map71081.3UniSTS
RH 3.4 Map71081.3RGD
RH 2.0 Map7812.1RGD
Cytogenetic Map7q36UniSTS
RH140584  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27131,404,122 - 131,404,325 (+)MAPPERmRatBN7.2
Rnor_6.07141,924,236 - 141,924,438NCBIRnor6.0
Rnor_5.07139,735,062 - 139,735,264UniSTSRnor5.0
RGSC_v3.47139,014,136 - 139,014,338UniSTSRGSC3.4
Celera7127,882,069 - 127,882,271UniSTS
RH 3.4 Map71076.0UniSTS
Cytogenetic Map7q36UniSTS
AI409936  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27131,352,218 - 131,352,391 (+)MAPPERmRatBN7.2
Rnor_6.07141,881,590 - 141,881,763NCBIRnor6.0
Rnor_6.07139,547,902 - 139,548,074NCBIRnor6.0
Rnor_5.07139,682,909 - 139,683,081UniSTSRnor5.0
RGSC_v3.47138,961,321 - 138,961,493UniSTSRGSC3.4
Celera7127,830,217 - 127,830,389UniSTS
RH 3.4 Map71076.0UniSTS
Cytogenetic Map7q36UniSTS
BM389484  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27131,418,457 - 131,418,668 (+)MAPPERmRatBN7.2
Rnor_6.07141,938,574 - 141,938,784NCBIRnor6.0
Rnor_5.07139,748,986 - 139,749,196UniSTSRnor5.0
RGSC_v3.47139,027,595 - 139,027,805UniSTSRGSC3.4
Celera7127,896,395 - 127,896,605UniSTS
RH 3.4 Map71077.4UniSTS
Cytogenetic Map7q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 10 74 35 41 11 8
Low 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000079011   ⟹   ENSRNOP00000073249
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7141,889,444 - 141,924,785 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087298   ⟹   ENSRNOP00000073278
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7131,362,450 - 131,404,670 (+)Ensembl
Rnor_6.0 Ensembl7141,882,251 - 141,924,788 (+)Ensembl
RefSeq Acc Id: NM_001100895   ⟹   NP_001094365
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27131,361,962 - 131,404,677 (+)NCBI
Rnor_6.07141,882,261 - 141,924,790 (+)NCBI
Rnor_5.07139,692,651 - 139,735,616 (+)NCBI
RGSC_v3.47138,971,063 - 139,014,690 (+)RGD
Celera7127,839,929 - 127,882,623 (+)RGD
Sequence:
RefSeq Acc Id: XM_039079332   ⟹   XP_038935260
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27131,362,563 - 131,404,677 (+)NCBI
RefSeq Acc Id: XM_039079333   ⟹   XP_038935261
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27131,361,994 - 131,404,677 (+)NCBI
RefSeq Acc Id: XM_039079334   ⟹   XP_038935262
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27131,385,352 - 131,404,677 (+)NCBI
RefSeq Acc Id: XM_039079335   ⟹   XP_038935263
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27131,369,416 - 131,404,677 (+)NCBI
RefSeq Acc Id: XM_039079336   ⟹   XP_038935264
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27131,362,082 - 131,404,677 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001094365   ⟸   NM_001100895
- UniProtKB: F7FD47 (UniProtKB/TrEMBL),   Q5BK34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073249   ⟸   ENSRNOT00000079011
RefSeq Acc Id: ENSRNOP00000073278   ⟸   ENSRNOT00000087298
RefSeq Acc Id: XP_038935261   ⟸   XM_039079333
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038935264   ⟸   XM_039079336
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038935260   ⟸   XM_039079332
- Peptide Label: isoform X1
- UniProtKB: F7FD47 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935263   ⟸   XM_039079335
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038935262   ⟸   XM_039079334
- Peptide Label: isoform X3
Protein Domains
bZIP   KID

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7FD47-F1-model_v2 AlphaFold F7FD47 1-268 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307360 AgrOrtholog
BioCyc Gene G2FUF-32033 BioCyc
Ensembl Genes ENSRNOG00000061088 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000073278 ENTREZGENE
  ENSRNOP00000073278.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000087298 ENTREZGENE
  ENSRNOT00000087298.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7125615 IMAGE-MGC_LOAD
  IMAGE:7453603 IMAGE-MGC_LOAD
InterPro ATF1 UniProtKB/TrEMBL
  bZIP_sf UniProtKB/TrEMBL
  Coactivator_CBP_pKID UniProtKB/TrEMBL
  Leuzip_CREB UniProtKB/TrEMBL
  TF_bZIP UniProtKB/TrEMBL
KEGG Report rno:315305 UniProtKB/TrEMBL
MGC_CLONE MGC:108957 IMAGE-MGC_LOAD
  MGC:125091 IMAGE-MGC_LOAD
NCBI Gene 315305 ENTREZGENE
PANTHER PTHR45879 UniProtKB/TrEMBL
  PTHR45879:SF2 UniProtKB/TrEMBL
Pfam bZIP_1 UniProtKB/TrEMBL
  pKID UniProtKB/TrEMBL
PharmGKB ATF1 RGD
PhenoGen Atf1 PhenoGen
PROSITE BZIP UniProtKB/TrEMBL
  BZIP_BASIC UniProtKB/TrEMBL
  KID UniProtKB/TrEMBL
SMART BRLZ UniProtKB/TrEMBL
Superfamily-SCOP SSF57959 UniProtKB/TrEMBL
UniProt F7FD47 ENTREZGENE, UniProtKB/TrEMBL
  Q3KR79_RAT UniProtKB/TrEMBL
  Q5BK34 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Atf1  activating transcription factor 1  Atf1_predicted  activating transcription factor 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Atf1_predicted  activating transcription factor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED