Celsr1 (cadherin, EGF LAG seven-pass G-type receptor 1) - Rat Genome Database

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Gene: Celsr1 (cadherin, EGF LAG seven-pass G-type receptor 1) Rattus norvegicus
Analyze
Symbol: Celsr1
Name: cadherin, EGF LAG seven-pass G-type receptor 1
RGD ID: 1560078
Description: Predicted to enable G protein-coupled receptor activity and calcium ion binding activity. Predicted to be involved in cell-cell adhesion and establishment of planar polarity. Predicted to act upstream of or within several processes, including apical protein localization; morphogenesis of an epithelium; and motor neuron migration. Predicted to be located in nucleoplasm and plasma membrane. Human ortholog(s) of this gene implicated in hereditary lymphedema. Orthologous to human CELSR1 (cadherin EGF LAG seven-pass G-type receptor 1); PARTICIPATES IN Wnt signaling, the planar cell polarity pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cadherin EGF LAG seven-pass G-type receptor 1; cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila); flamingo-like protein celsr1; LOC300128
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27116,987,616 - 117,125,035 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7116,987,605 - 117,125,164 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07126,774,010 - 126,914,085 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7126,775,516 - 126,913,585 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07126,484,850 - 126,625,684 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47123,900,366 - 124,036,122 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7113,278,640 - 113,416,057 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
clobetasol  (ISO)
cobalt dichloride  (EXP,ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (EXP,ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fucoxanthin  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glucose  (ISO)
inulin  (ISO)
L-methionine  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (EXP,ISO)
N-ethyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
testosterone  (EXP)
tetrachloroethene  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (ISO)
nucleoplasm  (IEA,ISO)
plasma membrane  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Planar cell polarity signaling in vertebrates. Jones C and Chen P, Bioessays. 2007 Feb;29(2):120-32.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:10932191   PMID:12842012   PMID:15632090   PMID:15744052   PMID:15955893   PMID:16687519   PMID:17229766   PMID:18849982   PMID:19357712   PMID:20223754   PMID:20353824   PMID:20631168  
PMID:20643356   PMID:20704721   PMID:32070035  


Genomics

Comparative Map Data
Celsr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27116,987,616 - 117,125,035 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7116,987,605 - 117,125,164 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07126,774,010 - 126,914,085 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7126,775,516 - 126,913,585 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07126,484,850 - 126,625,684 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47123,900,366 - 124,036,122 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7113,278,640 - 113,416,057 (-)NCBICelera
Cytogenetic Map7q34NCBI
CELSR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382246,361,174 - 46,537,620 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2246,360,834 - 46,537,620 (-)EnsemblGRCh38hg38GRCh38
GRCh372246,757,071 - 46,933,517 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362245,135,395 - 45,311,731 (-)NCBINCBI36Build 36hg18NCBI36
Build 342245,077,249 - 45,253,586NCBI
Celera2230,664,148 - 30,840,512 (-)NCBICelera
Cytogenetic Map22q13.31NCBI
HuRef2229,700,771 - 29,879,343 (-)NCBIHuRef
CHM1_12246,715,504 - 46,891,675 (-)NCBICHM1_1
T2T-CHM13v2.02246,845,906 - 47,025,248 (-)NCBIT2T-CHM13v2.0
Celsr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391585,782,959 - 85,918,424 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1585,783,130 - 85,918,404 (-)EnsemblGRCm39 Ensembl
GRCm381585,898,758 - 86,034,223 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1585,898,929 - 86,034,203 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1585,898,929 - 86,033,777 (-)EnsemblGRCm38mm10GRCm38
MGSCv371585,729,188 - 85,864,207 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361585,726,695 - 85,861,543 (-)NCBIMGSCv36mm8
Celera1588,032,450 - 88,175,947 (-)NCBICelera
Cytogenetic Map15E2NCBI
cM Map1540.42NCBI
Celsr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541330,457,030 - 30,561,124 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541330,455,194 - 30,561,124 (-)NCBIChiLan1.0ChiLan1.0
CELSR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan12258,881,830 - 59,067,171 (-)NCBINHGRI_mPanPan1
PanPan1.12245,427,275 - 45,604,286 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2245,428,159 - 45,604,453 (-)Ensemblpanpan1.1panPan2
CELSR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11019,704,104 - 19,836,886 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1019,707,804 - 19,837,481 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1019,627,660 - 19,761,740 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01020,441,895 - 20,572,829 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1020,441,951 - 20,572,830 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11020,159,738 - 20,293,475 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01020,471,194 - 20,605,951 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01020,654,864 - 20,787,972 (+)NCBIUU_Cfam_GSD_1.0
Celsr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049453,453,384 - 3,570,250 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366293,455,887 - 3,568,566 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366293,453,384 - 3,570,250 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC102159820
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl52,980,351 - 3,203,381 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.153,114,410 - 3,203,378 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25586,808 - 596,547 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CELSR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11928,842,332 - 29,030,672 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1928,844,644 - 29,030,216 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604596,500,977 - 96,687,142 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Celsr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247523,425,901 - 3,535,400 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247523,426,317 - 3,537,219 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Celsr1
651 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:48
Interacting mature miRNAs:51
Transcripts:ENSRNOT00000036025
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1582240Sffal1Serum free fatty acids level QTL 13.40.0021blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)7116677010124049952Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)7116677189127103496Rat

Markers in Region
RH131921  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27116,987,647 - 116,987,828 (+)MAPPERmRatBN7.2
Rnor_6.07126,774,042 - 126,774,222NCBIRnor6.0
Rnor_5.07126,484,882 - 126,485,062UniSTSRnor5.0
RGSC_v3.47123,899,318 - 123,899,498UniSTSRGSC3.4
Celera7113,278,672 - 113,278,852UniSTS
RH 3.4 Map7922.9UniSTS
Cytogenetic Map7q34UniSTS
RH132102  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27116,987,483 - 116,987,675 (+)MAPPERmRatBN7.2
Rnor_6.07126,773,878 - 126,774,069NCBIRnor6.0
Rnor_5.07126,484,718 - 126,484,909UniSTSRnor5.0
RGSC_v3.47123,899,154 - 123,899,345UniSTSRGSC3.4
Celera7113,278,508 - 113,278,699UniSTS
RH 3.4 Map7922.4UniSTS
Cytogenetic Map7q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 26 1 1 35 22 26 6
Low 2 17 21 6 18 6 2 2 39 13 8 5 2
Below cutoff 1 33 33 33 6 8 7 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC135400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC141997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY212290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000036025   ⟹   ENSRNOP00000029944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7116,987,605 - 117,125,164 (-)Ensembl
Rnor_6.0 Ensembl7126,775,516 - 126,913,585 (-)Ensembl
RefSeq Acc Id: XM_006242167   ⟹   XP_006242229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27116,987,616 - 117,125,034 (-)NCBI
Rnor_6.07126,774,010 - 126,914,084 (-)NCBI
Rnor_5.07126,484,850 - 126,625,684 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039080317   ⟹   XP_038936245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27116,987,616 - 117,125,035 (-)NCBI
RefSeq Acc Id: XM_039080318   ⟹   XP_038936246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27116,987,616 - 117,125,034 (-)NCBI
RefSeq Acc Id: XP_006242229   ⟸   XM_006242167
- Peptide Label: isoform X1
- UniProtKB: A6HTF9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000029944   ⟸   ENSRNOT00000036025
RefSeq Acc Id: XP_038936245   ⟸   XM_039080317
- Peptide Label: isoform X2
- UniProtKB: A6HTF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936246   ⟸   XM_039080318
- Peptide Label: isoform X3
- UniProtKB: F1MAS4 (UniProtKB/TrEMBL),   A6HTF9 (UniProtKB/TrEMBL)
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560078 AgrOrtholog
BioCyc Gene G2FUF-32521 BioCyc
Ensembl Genes ENSRNOG00000021285 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036025 ENTREZGENE
  ENSRNOT00000036025.6 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
  2.60.220.50 UniProtKB/TrEMBL
  4.10.1240.10 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
  Tie2 ligand-binding domain superfamily UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  ConA-like_subgrp UniProtKB/TrEMBL
  EG-like_dom UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  GAIN_dom_N UniProtKB/TrEMBL
  GAIN_dom_sf UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/TrEMBL
  GPCR_2_extracell_dom_sf UniProtKB/TrEMBL
  GPCR_2_extracellular_dom UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  Growth_fac_rcpt_N_dom UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_G UniProtKB/TrEMBL
NCBI Gene 300128 ENTREZGENE
PANTHER CADHERIN EGF LAG SEVEN-PASS G-TYPE RECEPTOR 1 UniProtKB/TrEMBL
  FAT ATYPICAL CADHERIN-RELATED UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/TrEMBL
  Cadherin UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  GAIN UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  HRM UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_G_2 UniProtKB/TrEMBL
PhenoGen Celsr1 PhenoGen
PRINTS CADHERIN UniProtKB/TrEMBL
  GPCRSECRETIN UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_3 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  LAM_G_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000021285 RatGTEx
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  HormR UniProtKB/TrEMBL
  LamG UniProtKB/TrEMBL
  SM00112 UniProtKB/TrEMBL
Superfamily-SCOP Cadherin UniProtKB/TrEMBL
  ConA_like_lec_gl UniProtKB/TrEMBL
  EGF/Laminin UniProtKB/TrEMBL
  Family A G protein-coupled receptor-like UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A6HTF9 ENTREZGENE, UniProtKB/TrEMBL
  F1MAS4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-27 Celsr1  cadherin, EGF LAG seven-pass G-type receptor 1  Celsr1  cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-25 Celsr1  cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)  Celsr1  cadherin EGF LAG seven-pass G-type receptor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Celsr1  cadherin EGF LAG seven-pass G-type receptor 1  LOC300128  flamingo-like protein celsr1  Symbol and Name updated 1299863 APPROVED
2006-02-09 LOC300128  flamingo-like protein celsr1      Symbol and Name status set to provisional 70820 PROVISIONAL