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Gene: Gxylt1 (glucoside xylosyltransferase 1) Rattus norvegicus

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Symbol:

Gxylt1

Name:

glucoside xylosyltransferase 1

RGD ID:

1563062

Description:

Predicted to enable UDP-xylosyltransferase activity. Predicted to be involved in O-glycan processing. Predicted to be located in membrane. Orthologous to human GXYLT1 (glucoside xylosyltransferase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cefaloridine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Glt8d3; glycosyltransferase 8 domain containing 3; glycosyltransferase 8 domain-containing protein 3; LOC300173; S33-D; similar to CG9996-PA

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GXYLT1 (glucoside xylosyltransferase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Gxylt1 (glucoside xylosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gxylt1 (glucoside xylosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GXYLT1 (glucoside xylosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GXYLT1 (glucoside xylosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gxylt1 (glucoside xylosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GXYLT1 (glucoside xylosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GXYLT1 (glucoside xylosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gxylt1 (glucoside xylosyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GXYLT1 (glucoside xylosyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gxylt1 (glucoside xylosyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gxylt1a (glucoside xylosyltransferase 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	shams	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gxylt1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	126,280,349 - 126,320,803 (-)	NCBI		GRCr8
mRatBN7.2	7	124,400,896 - 124,434,682 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	124,400,896 - 124,434,699 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	126,175,473 - 126,208,851 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	128,401,325 - 128,434,702 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	128,322,920 - 128,356,490 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	134,447,578 - 134,495,858 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	134,447,578 - 134,495,835 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	134,118,984 - 134,166,045 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	131,726,969 - 131,761,134 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	120,799,137 - 120,832,731 (-)	NCBI		Celera
Cytogenetic Map	7	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amenorrhea (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

captan (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

CGP 52608 (ISO)

choline (ISO)

crotonaldehyde (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

folpet (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

gentamycin (EXP)

indole-3-methanol (EXP)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

leflunomide (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

picoxystrobin (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

testosterone (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

O-glycan processing (IBA,ISO,ISS)

Cellular Component

membrane (IEA)

Molecular Function

UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase activity (IEA)

UDP-glycosyltransferase activity (IEA)

UDP-xylosyltransferase activity (IBA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16288221	PMID:19940119	PMID:30169771

Genomics

Comparative Map Data

Gxylt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	126,280,349 - 126,320,803 (-)	NCBI		GRCr8
mRatBN7.2	7	124,400,896 - 124,434,682 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	124,400,896 - 124,434,699 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	126,175,473 - 126,208,851 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	128,401,325 - 128,434,702 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	128,322,920 - 128,356,490 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	134,447,578 - 134,495,858 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	134,447,578 - 134,495,835 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	134,118,984 - 134,166,045 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	131,726,969 - 131,761,134 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	120,799,137 - 120,832,731 (-)	NCBI		Celera
Cytogenetic Map	7	q35	NCBI

GXYLT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	42,081,845 - 42,144,874 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	42,081,845 - 42,144,874 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	42,475,647 - 42,538,676 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	40,761,914 - 40,824,940 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	41,277,461 - 41,340,510 (-)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI
HuRef	12	39,502,946 - 39,566,034 (-)	NCBI		HuRef
CHM1_1	12	42,441,063 - 42,504,087 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	42,039,739 - 42,102,776 (-)	NCBI		T2T-CHM13v2.0

Gxylt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	93,137,611 - 93,173,060 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	93,137,623 - 93,173,060 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	93,239,730 - 93,275,336 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	93,239,742 - 93,275,179 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	93,070,173 - 93,105,515 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	93,067,922 - 93,103,264 (-)	NCBI		MGSCv36	mm8
Celera	15	95,381,488 - 95,418,772 (-)	NCBI		Celera
Cytogenetic Map	15	E3	NCBI
cM Map	15	47.34	NCBI

Gxylt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955500	1,479,159 - 1,511,731 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955500	1,479,159 - 1,511,385 (-)	NCBI	ChiLan1.0	ChiLan1.0

GXYLT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	51,998,816 - 52,075,968 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	51,995,551 - 52,072,729 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	46,570,205 - 46,631,899 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	47,445,059 - 47,496,939 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	47,448,871 - 47,491,021 (+)	Ensembl	panpan1.1		panPan2

GXYLT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	11,754,609 - 11,810,245 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	11,765,072 - 11,807,787 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	34,493,350 - 34,548,355 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	11,951,517 - 12,006,551 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	11,951,375 - 12,089,405 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	11,769,474 - 11,824,431 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	11,800,377 - 11,855,383 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	34,743,882 - 34,794,670 (-)	NCBI		UU_Cfam_GSD_1.0

Gxylt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	72,256,180 - 72,289,848 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	880,999 - 908,683 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	880,458 - 929,833 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GXYLT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	73,358,769 - 73,408,365 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	73,274,165 - 73,408,359 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

GXYLT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	38,320,163 - 38,377,157 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	38,321,991 - 38,377,166 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	208,196,085 - 208,257,506 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gxylt1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624917	1,909,156 - 1,968,608 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624917	1,904,987 - 1,968,657 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	907
Count of miRNA genes:	328
Interacting mature miRNAs:	455
Transcripts:	ENSRNOT00000058349
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631529	Tls2	T-lymphoma susceptibility QTL 2	0	0.001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	7	82111382	132099989	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	121393075	137014596	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	98549867	137014596	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	119280025	135560836	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	104186212	135371468	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	93302009	131686183	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	110725024	135371468	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	100548246	137014596	Rat
61397	Bw17	Body weight QTL 17	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	7	95485047	137014596	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	82111245	134948181	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	115313999	136544683	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	116269196	132020414	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	85043242	130043242	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	85497398	130497398	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	92362341	137014596	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	83626689	128626689	Rat

Markers in Region

D7Got125

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	124,429,308 - 124,429,503 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	134,490,327 - 134,490,521	NCBI	Rnor6.0
Rnor_5.0	7	134,160,537 - 134,160,731	UniSTS	Rnor5.0
RGSC_v3.4	7	131,755,807 - 131,756,002	RGD	RGSC3.4
RGSC_v3.4	7	131,755,808 - 131,756,002	UniSTS	RGSC3.4
RGSC_v3.1	7	131,832,245 - 131,832,439	RGD
Celera	7	120,827,406 - 120,827,600	UniSTS
RH 3.4 Map	7	1021.8	UniSTS
RH 3.4 Map	7	1021.8	RGD
RH 2.0 Map	7	742.5	RGD
Cytogenetic Map	7	q35	UniSTS

BF389068

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	124,402,248 - 124,402,401 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	134,448,931 - 134,449,083	NCBI	Rnor6.0
Rnor_5.0	7	134,120,337 - 134,120,489	UniSTS	Rnor5.0
RGSC_v3.4	7	131,728,322 - 131,728,474	UniSTS	RGSC3.4
Celera	7	120,800,494 - 120,800,646	UniSTS
RH 3.4 Map	7	1021.4	UniSTS
Cytogenetic Map	7	q35	UniSTS

RH131635

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	124,400,952 - 124,401,164 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	134,447,635 - 134,447,846	NCBI	Rnor6.0
Rnor_5.0	7	134,119,041 - 134,119,252	UniSTS	Rnor5.0
RGSC_v3.4	7	131,727,026 - 131,727,237	UniSTS	RGSC3.4
Celera	7	120,799,194 - 120,799,405	UniSTS
RH 3.4 Map	7	1021.1	UniSTS
Cytogenetic Map	7	q35	UniSTS

RH138193

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	124,410,980 - 124,411,106 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	134,471,848 - 134,471,973	NCBI	Rnor6.0
Rnor_5.0	7	134,142,058 - 134,142,183	UniSTS	Rnor5.0
RGSC_v3.4	7	131,737,482 - 131,737,607	UniSTS	RGSC3.4
Celera	7	120,809,216 - 120,809,341	UniSTS
RH 3.4 Map	7	1021.1	UniSTS
Cytogenetic Map	7	q35	UniSTS

AI231622

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	124,403,024 - 124,403,174 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	134,449,707 - 134,449,856	NCBI	Rnor6.0
Rnor_5.0	7	134,121,113 - 134,121,262	UniSTS	Rnor5.0
RGSC_v3.4	7	131,729,098 - 131,729,247	UniSTS	RGSC3.4
Celera	7	120,801,270 - 120,801,419	UniSTS
RH 3.4 Map	7	1018.9	UniSTS
Cytogenetic Map	7	q35	UniSTS

AI412638

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	124,436,930 - 124,437,132 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	134,498,131 - 134,498,332	NCBI	Rnor6.0
Rnor_5.0	7	134,168,341 - 134,168,542	UniSTS	Rnor5.0
RGSC_v3.4	7	131,763,430 - 131,763,631	UniSTS	RGSC3.4
Celera	7	120,835,027 - 120,835,228	UniSTS
RH 3.4 Map	7	1017.7	UniSTS
Cytogenetic Map	7	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY623033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY623034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY623035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY623036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC167068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000058349 ⟹ ENSRNOP00000055150

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	124,400,896 - 124,434,636 (-)	Ensembl
Rnor_6.0 Ensembl	7	134,447,578 - 134,495,835 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081104 ⟹ ENSRNOP00000073028

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	124,405,776 - 124,421,589 (-)	Ensembl
Rnor_6.0 Ensembl	7	134,452,458 - 134,482,607 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099240 ⟹ ENSRNOP00000091433

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	124,405,775 - 124,434,699 (-)	Ensembl

RefSeq Acc Id:

NM_001100887 ⟹ NP_001094357

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,280,349 - 126,314,087 (-)	NCBI
mRatBN7.2	7	124,400,896 - 124,434,636 (-)	NCBI
Rnor_6.0	7	134,447,578 - 134,495,835 (-)	NCBI
Rnor_5.0	7	134,118,984 - 134,166,045 (-)	NCBI
RGSC_v3.4	7	131,726,969 - 131,761,134 (-)	RGD
Celera	7	120,799,137 - 120,832,731 (-)	RGD

Sequence:

show sequence

GGCGGCGGCGGTGAGGGCGGCAGCGGCGGTGGCGGTAGCGCGGGCCGGGATGCGGCGCTACCTG
CGGGTCGTAGGGCTGTGCCTGGCCTGCGGCTTCTGCTCGCTGCTGTACGCCTTCAGCCAGCTCG
CAGTGTCCTTGGAGGAAGGAGCGGCCGTAGGCCGCAGGCCGCAGGCCGCGGTGGCTTCCTGGCT
GGCGGACGGCGGACGCGGCACCGGGAGAGGCGCGGGCAGCGCGGGCCCGGGCCGGACCGGCAGG
TGTAAGGAGGTCTCTCTGTCTTACTGGAATCCCTACTGGATGCTGCCCTCTGATGTTTGTGGAG
TGAACTGCTTTTGGGAAGCGGCTTTTAGGTATGGTCTGAAAACAAGGCCCACTGAGAAAATGCA
CCTTGCCGTTGTCGCCTGTGGTGACAGACTGGAAGAAACTGTGACCATGCTGAAGTCGGCTCTG
ATTTTCAGCATCAAGCCACTGCACGTCCACATTTTTGCTGAAGACCAACTACACGATAGCTTTA
AAGACAGACTCGACAGCTGGTCATTTCTACAGAGATTCAACTATAGCCTGTATCCCATCACCTT
CCCAAGCGACAGTGCCATGGAGTGGAAGAAGCTCTTCAAGCCCTGTGCTTCCCAGAGGCTGTTC
TTGCCATTGATACTGAAAGGGGTTGACTCGCTGTTGTACGTCGACACGGATGTCCTCTTCCTGC
GACCTGTTGATGACATCTGGTCGCTGCTGGAGAGATTCAACTCCACACAAATCGCCGCCATGGC
GCCGGAGCACGAGGAGCCCAGGGTCGGATGGTACAACCGCTTCGCCCGGCACCCGTACTACGGG
CGCACAGGCGTGAACTCGGGAGTGATGCTCATGAACATGACCCGGATGAGGAGAAAGTACTTCA
AGAACGATATGACCACTGCACGGCTACAATGGGGAGACATACTTATGCCACTGCTTAAAAAGTA
CAAACTGAACATCACATGGGGTGACCAAGATCTGCTAAATATCATGTTTTATCATAATCCAGAA
AGCCTTTTTGTCTTCCCGTGTCAGTGGAATTACCGGCCAGATCACTGTATATATGGAAGCAATT
GCCGAGAAGCAGAAGAGGAAGGAGTCTTCATTCTTCATGGAAACAGAGGGGTTTACCATGACGA
CAAGCAGCCAGCTTTCAGAGCTATGTATGAAGCACTAAGAAATTGTTCTCTTGAGGATGATTCC
GTCCGTTCCTTACTCAAACCTTTAGAACTGGAACTACAGAAGACAGTTCACACGTATTGTGGAA
AAACTTACAAAATATTTATCAAGCAGTTGGCGAAAAGCATAAGAAACCGTTACGACACACCACC
AAAGGAAAGGTGATTCTTCATGACGAAGTACACTGAAGAAACAGTAATGCCTCAGGAGATATGA
AGGAATGGTATTGGAAAAGGATTTAGGGGGCGTTTCTGTCTCCAGAATAATCCTCTTCGGAAGA
ATTAAATGAGCAGTATATTCATGCCATGAAGAATAAGTTAAACTCTGGTGCTGCAGTAAGAAGA
TGGTTTGTAACATTACTTGGTGTCTTTCCAGCATTAGTGAACGCATTGGACAGTGTGGGCTGTG
GGGCTGGGTTGGCTCGTGATCAAGTAAGTAAGGACTGGGAGGATGGGGAGAAAGTGTACCTCGG
ACATAGTGGAGACATTCAAGCTGTGAGTGTAGCAATAATTTATGTCAGCACTAACCTCACTTTA
AGTGTGAGAAAAGTTTACAGGAGCAGAAAGGTTCTGTTTCTTAAGAAATGTGATGTAACCAATG
TTAACTGTTGACAATCTATGTACCACATACATTTCATCTCTGCTCTATGACATTTGGTGACAAT
CATGTTTGAGATTATTTGTAGATTTTACGTAAGCTGCACATTTAAAAATTAGCTGTATGAGGAA
GGAGAAAATAGTAAAACTTAAAAGGAGGCAGTGTGTGTGTGCCAGTGTGTGAGTGTGAGTGAGA
GTGTGTGAGTGTGTATGTATGTGAGTATGTGTGTGTGAGTGTGGTGGGTGTGTATGTATGTGTG
TGTGTGTGTATGAGTGTGGTGTGTGTATATGTATGTGTGTGTTTGTGCGTGTGTGAGTGTGGTG
TGTGTATATGTATGTGTGTGTGTATGAGTGTGGTGTGTATATGTGTGTGTGTGTGAGAGTGCTG
TGTGTGCGTGTGCACGTGTGTGTTGACAAATGAAGTGTGTTCATTTTGTATGTATTAAACTGTC
TTGCCAAACCTAAGCTCTAAGATATTTGGGGACATTTTAAAAATCACTTTAAGTGAAAAATTTC
AGCTTTACTGGGCATTCTGGAAGCAAAATATATTATGCTGAGAATAAAGTAAGAACCTAGTCGC
AACACTACCAGGATGGTGGAAAATGCAGCGGACCAAATGCATAAGCCTGTGAGATTAGCAGTGG
TCCTTTCAGCTTTCCTTCTACCTCAAAGTGCATTTCCAGGATCCGTCTGAAGAGGGAGGCAGAT
GCAGACAGAGCCTTACTTAGAGTAGATTAGACAGCTGTGGTGGATGGTTTGGAGGAAGAAGATT
TTTACATCTAGCTGTAGAAAAAGGCGTTTTGGTTTGGGTAAATATGCGTATTTTTTACTTTGAA
CACCATTGAAGATAGTTCCTTTTTAATATCTGGACCTTCACTCCTTGTCCATCTTGCCTTGACA
CTTACTGTATTCTGAGTGGGTAGCGTGTGCCATTCTGGGGCAGTTTCTTCCTACCAGGTGCTTC
TGAGGCCCGGGCTGTATTCTGTTTCTCTTGGACCTTAACGCTCACCCAGAGAAGGGGAAGTTAA
TGAAGGAGCAGTATCAGCTGTGACGGTCCCGGATCCTCTGTAGGAAGCGATCAGTGCAGTTGCT
CCAACTTCAGTAGTTCAGCCAGAGACAGACCAAGAGAAGGTTTAAAATGCCATCAAAGTATCTG
CGCCCAGGAGAGGAATTGTTATTAGCTCAGTACGCAGATAGGTTGAGGGAGCAGCAGCCATGAT
TCCTTGGCAGAATGTCATCATGAAGTTAGATTCTGTGGCCTGTGTTCAAGTTTAGCTTGTTAGG
TGGAAACATGAGAACCTTAGCCTTTGAAGTTTGGCTTATAATGTGAGAGAGCTTGCCAAAAACA
AGTCCTACATATACTGTATCTAGGAAGGAGTCTTTAAGAAATTTTTTAAATGAAGAGATTAAAA
ATTATATCAAAGTAGACTAGGGCCATACCTCAATAGTCAGAGTGCTTACTTCATGTGCTCAAGA
ACCAGCAGTGCAGAAAATAATAGGAGATGAGAAGGAAGTAAGATCTTAGTGCAGCGCTCTCACT
GGTCATGTCTGTTACCAGTCAGGATCTTGCCACATTTACGTCATCTGTTCCTTTTTTATATTAA
AGTCTCAGGCATCATTCTGTGTCCCTGCAGTAAATGGTTTGGTACTTACAGGTAACCACGGCAA
CTACATCATCCTTAGCAACAGCAGCAGCTGCCTTTGGTCTGTCTTACATACGCTTGGTGCACGA
TGGTTCTGCTTTGAGTGAGTTCCTCAGAAGGTTCCGATGTAGCTAGTTTAGGAAGCACTGGAAA
TTCTTATGCCATCCTTAAGGTTGGAGTTAGGATGTCACAGTTATTGGCACAATTGCTAACTTAT
AAGTGCCATTTTCAGATAGAGGAAGCACTTGGGGTTATTGACGAGAGAGGGACTCATGAGTACC
TTTAGATGCAATTTTCTCAGTAGCCGAAGCCTCAACCCCATGCGCTCCACTCTGATTGGTTGAG
GCCGTTTAGAGAAAGAATCTTAAAATGCATCAAACCTCTAGAAAGTCTGTTTTAAGAAAATGCA
GTTTGCCTTTATGAGGATGAGCTCATGAGCTATGCCATGCTTGCCTTGGACACTGCTTCCTCAT
GGCTCTCATCGGCTTATGTCAAGTGTCAGTGTCATGACGAGAACAGATGGGGACTGGCCTGCTT
TCCCTTTGTGGGCTTGAGGGGTGTGCTGACCACACCGTGCTAGAGCGGCGAGGAGGTGTGGAAG
GGGTGGCTGGAGGGACGCATGTAGCTCCTCAGCCATGCCAGTGTTGATGGCATCCAGTTTTGCC
AGGGGCTGGGCTGCCTCCTGAGGCTGAGAGCTTTTTGTCTGTCTTCTCCAGGGTGGATTTGTTG
ATGGTATGTGGAAGGAACAGATTTTAAGGAAGAGAGGAAGAGAAGAAAAGGATGAAGCAAATGA
ATAGTCAAGAAAGGAGAGAGAGAGAGGTAAAAGAATGACAGAAGGCTAAGTGAGCGAAAGATGA
AGGAAGGGGGGAGATGGGTAGGTGCAGATGAAGGGAACTGGAAACATGGGGTCCCCTGCCTAGG
TCAGTGCTTGCCCTACACTGCCTGGAGCCTGCGGCTGGGGATAGCAGAGCCAGTCTTGTTGGAG
TCATTGATAACAGACACGTTTTTTGGTCACCTTGTTCATTGAGTGGTAGTTGTCCTTTTATTTT
CTTTGCCTGTGGAAACACACATACTTTCCATTTTAATGTCCTTTAGCTTATCCAGGGTAAGTCT
GTGAAGGAAACAGCTTTGTAATGTCTAAATCTCTCCTATCCGTTTTTCCCTAGCACTGCTAATT
AGAGGCCAGTATGACCATTTTGTTTGTTTGTTTGTTTACTTTTAAGTATAGCTATTTCCAACTT
ATATATAAAAATCTCCTCAGGGAGAACTGAAATATTATAAAATAATCCTTAGCTTGCGGCGTTG
CCTAGAATGGTGGCTAGGGCAGTGGTTACACCTACCTGTTCCTCCCCGTCCCAGTGGGGATACT
TTCAGTGGAACTGGTGAGTGACTCAGGAGACAGATGGTGGAAACATTAAAAGCAAACCTTTAAA
GAATACTCATTGTCAGGACAGAGAGTTTGCTCAATGATTCTGAGCACTTGGTCCCAGCACCCAC
ATGGTGGTCCACAACTACCTATAACTCCAATTCCAAGGGATCCAACACCCTCTTCTAACCTCTG
GGCACCAGACCCATATGTGGTGCACATGCACACACACAGGCAACACATACATATAATCTAAAAA
CATTTAAAAATACTCACTGTCCTTTCCAGTTGCTTATAATAAATAGCACAAGCACAGTTCGCTC
CTTTGAGATGTTCTTATTAATGTGGTTGAGCTGTCTTTTCAAAAATGTTTCTGGTTTGTTTTTT
GTTTTTGTTTTTGAATAGAGAAGAAAAATAGAATGTGCAATATGTCCGGCGTGGGGCCAGTTAT
CCATTTATTAAGTGTAATTTCAAGTGTCTTAAAGTAATAACCACCTTACTGCATTTTAATACCC
GGTGGAAGTAACCGAGGTGGCCAGTTTTGCCGTGGTCATCCTTTACACTGCCAAAGCAGCCCCT
TTCTTCTAGAATCTACCTAACTTGTTCTGATAGTTGTAGTTTTTTTAATTCATTGAAGATAAGA
TTAAAAAAAAAACAAAACCCTGAGGTATATAGATTTGAGACCGATGTCTAAAAGCTGTTATAAG
GATCACAACTGGGCGTGGTGGCACATGACCTGTTACCCAGTACTTGGGAAATTGAGGTGCATGC
AAGGGCAGTATGGCCTTTGTTGAGATTTTTGTCTCAAGAAGCAAAATAAAAACAACAAAAAAAC
AAAACAAAACAAAAAACCCAAAACAGAAAAACCTCTACAAGTGTGTGCTAATCAGATATGTAGT
CCTTAGAGAATCGTGAGACAGTGTGTGCCTGTTGGCCTGGCAATCTACACCAGGTTACATACCA
GTGTCAGGATTACTTTTCAGAACTTGTCACCTCATCCTGGCCAATAATTACAAGTATCTCCTGT
GATTTCCTTAGACTTTTCTATAATTTTATGTTTCAAACAGTCAGGAGTTTTGTAGTGAATTTCT
CTCAGTAATGCTGTGAATACCAGATATTTTCCTATCAAACTTGAGAACTGATTGGGACATTTGA
CCTGTGTAGATAAAACATGCAGTCAGACTATTGGAGCATCTTCACACACAGCACACCATGACCG
CACCTTCTGAAAGTTCATTTAGAGATTTCGACCACCTATGCCATTTAAACAGTAAATCGTTCCC
CTGGGGTAATACTTCTGTCTGAACTGTTACAAGTCCAACTGTTACAAGTGGACTTTTTAAAAAC
ACAAAACTAATAGCTGTTTTCAGCTTTTGTATTAAATCTCTTCAGGGAATATTGAAATGTTATA
AAATAATCCATAGCTGTGGCGTTGTTCTAGACCGTGCCTGTTCTGAATACAGCAGAACATGCCC
TTGTCGCACGATTACCGTTATATGTGAGGGCTGATCAGAGGGATTTGATGCGCTCTGTATCAGA
AGGTGTCTGAGATGGAAATGAGAGCCTGGAACCAGCTGCAGGGGCTCACGTCTGCCAAGCATTT
GCTTGGGTCTGTTACTGTGCTGAGCACAGTGGCCTGCGGCTGCGGGAAGGCATCGTGATGAACC
ATGCTATGTAGACATTACTGCCTCGAAACTGCTTTTACCTTAAAAATATTTTGGTTTTTATAAT
AATGTGAATATTTTAAGTCATTTGTGTATCTTGAGAACTCTTAATGGGGAGTATAAAAGTATGA
ATTTGGGGTCTAGCTTACCAGTATTGGAAGATGCCTTGCTCTGTTCTGGAAGGTTCAGCTCAGG
TGTTTCTTGAGAAGCTGTATGCTGTTACTAAATATGTACTCAATAAATGTTGGATTTCCTCA

hide sequence

RefSeq Acc Id:

XM_006242192 ⟹ XP_006242254

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,280,349 - 126,320,803 (-)	NCBI
mRatBN7.2	7	124,400,896 - 124,434,674 (-)	NCBI
Rnor_6.0	7	134,447,578 - 134,495,858 (-)	NCBI
Rnor_5.0	7	134,118,984 - 134,166,045 (-)	NCBI

Sequence:

show sequence

TAGTTCGCCCGGGCGGGAGAGGCGGCGGCGGCGGTGAGGGCGGCAGCGGCGGTGGCGGTAGCGC
GGGCCGGGATGCGGCGCTACCTGCGGGTCGTAGGGCTGTGCCTGGCCTGCGGCTTCTGCTCGCT
GCTGTACGCCTTCAGCCAGCTCGCAGTGTCCTTGGAGGAAGGAGCGGCCGTAGGCCGCAGGCCG
CAGGCCGCGGTGGCTTCCTGGCTGGCGGACGGCGGACGCGGCACCGGGAGAGGCGCGGGCAGCG
CGGGCCCGGGCCGGACCGGCAGGTATGGTCTGAAAACAAGGCCCACTGAGAAAATGCACCTTGC
CGTTGTCGCCTGTGGTGACAGACTGGAAGAAACTGTGACCATGCTGAAGTCGGCTCTGATTTTC
AGCATCAAGCCACTGCACGTCCACATTTTTGCTGAAGACCAACTACACGATAGCTTTAAAGACA
GACTCGACAGCTGGTCATTTCTACAGAGATTCAACTATAGCCTGTATCCCATCACCTTCCCAAG
CGACAGTGCCATGGAGTGGAAGAAGCTCTTCAAGCCCTGTGCTTCCCAGAGGCTGTTCTTGCCA
TTGATACTGAAAGGGGTTGACTCGCTGTTGTACGTCGACACGGATGTCCTCTTCCTGCGACCTG
TTGATGACATCTGGTCGCTGCTGGAGAGATTCAACTCCACACAAATCGCCGCCATGGCGCCGGA
GCACGAGGAGCCCAGGGTCGGATGGTACAACCGCTTCGCCCGGCACCCGTACTACGGGCGCACA
GGCGTGAACTCGGGAGTGATGCTCATGAACATGACCCGGATGAGGAGAAAGTACTTCAAGAACG
ATATGACCACTGCACGGCTACAATGGGGAGACATACTTATGCCACTGCTTAAAAAGTACAAACT
GAACATCACATGGGGTGACCAAGATCTGCTAAATATCATGTTTTATCATAATCCAGAAAGCCTT
TTTGTCTTCCCGTGTCAGTGGAATTACCGGCCAGATCACTGTATATATGGAAGCAATTGCCGAG
AAGCAGAAGAGGAAGGAGTCTTCATTCTTCATGGAAACAGAGGGGTTTACCATGACGACAAGCA
GCCAGCTTTCAGAGCTATGTATGAAGCACTAAGAAATTGTTCTCTTGAGGATGATTCCGTCCGT
TCCTTACTCAAACCTTTAGAACTGGAACTACAGAAGACAGTTCACACGTATTGTGGAAAAACTT
ACAAAATATTTATCAAGCAGTTGGCGAAAAGCATAAGAAACCGTTACGACACACCACCAAAGGA
AAGGTGATTCTTCATGACGAAGTACACTGAAGAAACAGTAATGCCTCAGGAGATATGAAGGAAT
GGTATTGGAAAAGGATTTAGGGGGCGTTTCTGTCTCCAGAATAATCCTCTTCGGAAGAATTAAA
TGAGCAGTATATTCATGCCATGAAGAATAAGTTAAACTCTGGTGCTGCAGTAAGAAGATGGTTT
GTAACATTACTTGGTGTCTTTCCAGCATTAGTGAACGCATTGGACAGTGTGGGCTGTGGGGCTG
GGTTGGCTCGTGATCAAGTAAGTAAGGACTGGGAGGATGGGGAGAAAGTGTACCTCGGACATAG
TGGAGACATTCAAGCTGTGAGTGTAGCAATAATTTATGTCAGCACTAACCTCACTTTAAGTGTG
AGAAAAGTTTACAGGAGCAGAAAGGTTCTGTTTCTTAAGAAATGTGATGTAACCAATGTTAACT
GTTGACAATCTATGTACCACATACATTTCATCTCTGCTCTATGACATTTGGTGACAATCATGTT
TGAGATTATTTGTAGATTTTACGTAAGCTGCACATTTAAAAATTAGCTGTATGAGGAAGGAGAA
AATAGTAAAACTTAAAAGGAGGCAGTGTGTGTGTGCCAGTGTGTGAGTGTGAGTGAGAGTGTGT
GAGTGTGTATGTATGTGAGTATGTGTGTGTGAGTGTGGTGGGTGTGTATGTATGTGTGTGTGTG
TGTATGAGTGTGGTGTGTGTATATGTATGTGTGTGTTTGTGCGTGTGTGAGTGTGGTGTGTGTA
TATGTATGTGTGTGTGTATGAGTGTGGTGTGTATATGTGTGTGTGTGTGAGAGTGCTGTGTGTG
CGTGTGCACGTGTGTGTTGACAAATGAAGTGTGTTCATTTTGTATGTATTAAACTGTCTTGCCA
AACCTAAGCTCTAAGATATTTGGGGACATTTTAAAAATCACTTTAAGTGAAAAATTTCAGCTTT
ACTGGGCATTCTGGAAGCAAAATATATTATGCTGAGAATAAAGTAAGAACCTAGTCGCAACACT
ACCAGGATGGTGGAAAATGCAGCGGACCAAATGCATAAGCCTGTGAGATTAGCAGTGGTCCTTT
CAGCTTTCCTTCTACCTCAAAGTGCATTTCCAGGATCCGTCTGAAGAGGGAGGCAGATGCAGAC
AGAGCCTTACTTAGAGTAGATTAGACAGCTGTGGTGGATGGTTTGGAGGAAGAAGATTTTTACA
TCTAGCTGTAGAAAAAGGCGTTTTGGTTTGGGTAAATATGCGTATTTTTTACTTTGAACACCAT
TGAAGATAGTTCCTTTTTAATATCTGGACCTTCACTCCTTGTCCATCTTGCCTTGACACTTACT
GTATTCTGAGTGGGTAGCGTGTGCCATTCTGGGGCAGTTTCTTCCTACCAGGTGCTTCTGAGGC
CCGGGCTGTATTCTGTTTCTCTTGGACCTTAACGCTCACCCAGAGAAGGGGAAGTTAATGAAGG
AGCAGTATCAGCTGTGACGGTCCCGGATCCTCTGTAGGAAGCGATCAGTGCAGTTGCTCCAACT
TCAGTAGTTCAGCCAGAGACAGACCAAGAGAAGGTTTAAAATGCCATCAAAGTATCTGCGCCCA
GGAGAGGAATTGTTATTAGCTCAGTACGCAGATAGGTTGAGGGAGCAGCAGCCATGATTCCTTG
GCAGAATGTCATCATGAAGTTAGATTCTGTGGCCTGTGTTCAAGTTTAGCTTGTTAGGTGGAAA
CATGAGAACCTTAGCCTTTGAAGTTTGGCTTATAATGTGAGAGAGCTTGCCAAAAACAAGTCCT
ACATATACTGTATCTAGGAAGGAGTCTTTAAGAAATTTTTTAAATGAAGAGATTAAAAATTATA
TCAAAGTAGACTAGGGCCATACCTCAATAGTCAGAGTGCTTACTTCATGTGCTCAAGAACCAGC
AGTGCAGAAAATAATAGGAGATGAGAAGGAAGTAAGATCTTAGTGCAGCGCTCTCACTGGTCAT
GTCTGTTACCAGTCAGGATCTTGCCACATTTACGTCATCTGTTCCTTTTTTATATTAAAGTCTC
AGGCATCATTCTGTGTCCCTGCAGTAAATGGTTTGGTACTTACAGGTAACCACGGCAACTACAT
CATCCTTAGCAACAGCAGCAGCTGCCTTTGGTCTGTCTTACATACGCTTGGTGCACGATGGTTC
TGCTTTGAGTGAGTTCCTCAGAAGGTTCCGATGTAGCTAGTTTAGGAAGCACTGGAAATTCTTA
TGCCATCCTTAAGGTTGGAGTTAGGATGTCACAGTTATTGGCACAATTGCTAACTTATAAGTGC
CATTTTCAGATAGAGGAAGCACTTGGGGTTATTGACGAGAGAGGGACTCATGAGTACCTTTAGA
TGCAATTTTCTCAGTAGCCGAAGCCTCAACCCCATGCGCTCCACTCTGATTGGTTGAGGCCGTT
TAGAGAAAGAATCTTAAAATGCATCAAACCTCTAGAAAGTCTGTTTTAAGAAAATGCAGTTTGC
CTTTATGAGGATGAGCTCATGAGCTATGCCATGCTTGCCTTGGACACTGCTTCCTCATGGCTCT
CATCGGCTTATGTCAAGTGTCAGTGTCATGACGAGAACAGATGGGGACTGGCCTGCTTTCCCTT
TGTGGGCTTGAGGGGTGTGCTGACCACACCGTGCTAGAGCGGCGAGGAGGTGTGGAAGGGGTGG
CTGGAGGGACGCATGTAGCTCCTCAGCCATGCCAGTGTTGATGGCATCCAGTTTTGCCAGGGGC
TGGGCTGCCTCCTGAGGCTGAGAGCTTTTTGTCTGTCTTCTCCAGGGTGGATTTGTTGATGGTA
TGTGGAAGGAACAGATTTTAAGGAAGAGAGGAAGAGAAGAAAAGGATGAAGCAAATGAATAGTC
AAGAAAGGAGAGAGAGAGAGGTAAAAGAATGACAGAAGGCTAAGTGAGCGAAAGATGAAGGAAG
GGGGGAGATGGGTAGGTGCAGATGAAGGGAACTGGAAACATGGGGTCCCCTGCCTAGGTCAGTG
CTTGCCCTACACTGCCTGGAGCCTGCGGCTGGGGATAGCAGAGCCAGTCTTGTTGGAGTCATTG
ATAACAGACACGTTTTTTGGTCACCTTGTTCATTGAGTGGTAGTTGTCCTTTTATTTTCTTTGC
CTGTGGAAACACACATACTTTCCATTTTAATGTCCTTTAGCTTATCCAGGGTAAGTCTGTGAAG
GAAACAGCTTTGTAATGTCTAAATCTCTCCTATCCGTTTTTCCCTAGCACTGCTAATTAGAGGC
CAGTATGACCATTTTGTTTGTTTGTTTGTTTACTTTTAAGTATAGCTATTTCCAACTTATATAT
AAAAATCTCCTCAGGGAGAACTGAAATATTATAAAATAATCCTTAGCTTGCGGCGTTGCCTAGA
ATGGTGGCTAGGGCAGTGGTTACACCTACCTGTTCCTCCCCGTCCCAGTGGGGATACTTTCAGT
GGAACTGGTGAGTGACTCAGGAGACAGATGGTGGAAACATTAAAAGCAAACCTTTAAAGAATAC
TCATTGTCAGGACAGAGAGTTTGCTCAATGATTCTGAGCACTTGGTCCCAGCACCCACATGGTG
GTCCACAACTACCTATAACTCCAATTCCAAGGGATCCAACACCCTCTTCTAACCTCTGGGCACC
AGACCCATATGTGGTGCACATGCACACACACAGGCAACACATACATATAATCTAAAAACATTTA
AAAATACTCACTGTCCTTTCCAGTTGCTTATAATAAATAGCACAAGCACAGTTCGCTCCTTTGA
GATGTTCTTATTAATGTGGTTGAGCTGTCTTTTCAAAAATGTTTCTGGTTTGTTTTTTGTTTTT
GTTTTTGAATAGAGAAGAAAAATAGAATGTGCAATATGTCCGGCGTGGGGCCAGTTATCCATTT
ATTAAGTGTAATTTCAAGTGTCTTAAAGTAATAACCACCTTACTGCATTTTAATACCCGGTGGA
AGTAACCGAGGTGGCCAGTTTTGCCGTGGTCATCCTTTACACTGCCAAAGCAGCCCCTTTCTTC
TAGAATCTACCTAACTTGTTCTGATAGTTGTAGTTTTTTTAATTCATTGAAGATAAGATTAAAA
AAAAAACAAAACCCTGAGGTATATAGATTTGAGACCGATGTCTAAAAGCTGTTATAAGGATCAC
AACTGGGCGTGGTGGCACATGACCTGTTACCCAGTACTTGGGAAATTGAGGTGCATGCAAGGGC
AGTATGGCCTTTGTTGAGATTTTTGTCTCAAGAAGCAAAATAAAAACAACAAAAAAACAAAACA
AAACAAAAAACCCAAAACAGAAAAACCTCTACAAGTGTGTGCTAATCAGATATGTAGTCCTTAG
AGAATCGTGAGACAGTGTGTGCCTGTTGGCCTGGCAATCTACACCAGGTTACATACCAGTGTCA
GGATTACTTTTCAGAACTTGTCACCTCATCCTGGCCAATAATTACAAGTATCTCCTGTGATTTC
CTTAGACTTTTCTATAATTTTATGTTTCAAACAGTCAGGAGTTTTGTAGTGAATTTCTCTCAGT
AATGCTGTGAATACCAGATATTTTCCTATCAAACTTGAGAACTGATTGGGACATTTGACCTGTG
TAGATAAAACATGCAGTCAGACTATTGGAGCATCTTCACACACAGCACACCATGACCGCACCTT
CTGAAAGTTCATTTAGAGATTTCGACCACCTATGCCATTTAAACAGTAAATCGTTCCCCTGGGG
TAATACTTCTGTCTGAACTGTTACAAGTCCAACTGTTACAAGTGGACTTTTTAAAAACACAAAA
CTAATAGCTGTTTTCAGCTTTTGTATTAAATCTCTTCAGGGAATATTGAAATGTTATAAAATAA
TCCATAGCTGTGGCGTTGTTCTAGACCGTGCCTGTTCTGAATACAGCAGAACATGCCCTTGTCG
CACGATTACCGTTATATGTGAGGGCTGATCAGAGGGATTTGATGCGCTCTGTATCAGAAGGTGT
CTGAGATGGAAATGAGAGCCTGGAACCAGCTGCAGGGGCTCACGTCTGCCAAGCATTTGCTTGG
GTCTGTTACTGTGCTGAGCACAGTGGCCTGCGGCTGCGGGAAGGCATCGTGATGAACCATGCTA
TGTAGACATTACTGCCTCGAAACTGCTTTTACCTTAAAAATATTTTGGTTTTTATAATAATGTG
AATATTTTAAGTCATTTGTGTATCTTGAGAACTCTTAATGGGGAGTATAAAAGTATGAATTTGG
GGTCTAGCTTACCAGTATTGGAAGATGCCTTGCTCTGTTCTGGAAGGTTCAGCTCAGGTGTTTC
TTGAGAAGCTGTATGCTGTTACTAAATATGTACTCAATAAATGTTGGATTTCCTCA

hide sequence

RefSeq Acc Id:

XM_039078904 ⟹ XP_038934832

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,280,349 - 126,305,304 (-)	NCBI
mRatBN7.2	7	124,400,896 - 124,434,399 (-)	NCBI

RefSeq Acc Id:

XM_039078905 ⟹ XP_038934833

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,289,726 - 126,314,125 (-)	NCBI
mRatBN7.2	7	124,410,735 - 124,434,682 (-)	NCBI

RefSeq Acc Id:

XM_039078906 ⟹ XP_038934834

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,289,726 - 126,314,125 (-)	NCBI
mRatBN7.2	7	124,410,735 - 124,434,680 (-)	NCBI

RefSeq Acc Id:

XM_039078907 ⟹ XP_038934835

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,280,349 - 126,298,532 (-)	NCBI
mRatBN7.2	7	124,405,667 - 124,419,083 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094357	(Get FASTA)	NCBI Sequence Viewer
	XP_006242254	(Get FASTA)	NCBI Sequence Viewer
	XP_038934832	(Get FASTA)	NCBI Sequence Viewer
	XP_038934833	(Get FASTA)	NCBI Sequence Viewer
	XP_038934834	(Get FASTA)	NCBI Sequence Viewer
	XP_038934835	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67068	(Get FASTA)	NCBI Sequence Viewer
	AAT46050	(Get FASTA)	NCBI Sequence Viewer
	EDL76618	(Get FASTA)	NCBI Sequence Viewer
	EDL76619	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000055150.2
	ENSRNOP00000073028.1
	ENSRNOP00000091433.1
	ENSRNOP00055016084
	ENSRNOP00060007896
	ENSRNOP00065021964
GenBank Protein	Q6GX83	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001094357 ⟸ NM_001100887

- UniProtKB:

Q6GX83 (UniProtKB/Swiss-Prot), A6K7S6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRRYLRVVGLCLACGFCSLLYAFSQLAVSLEEGAAVGRRPQAAVASWLADGGRGTGRGAGSAGP
GRTGRCKEVSLSYWNPYWMLPSDVCGVNCFWEAAFRYGLKTRPTEKMHLAVVACGDRLEETVTM
LKSALIFSIKPLHVHIFAEDQLHDSFKDRLDSWSFLQRFNYSLYPITFPSDSAMEWKKLFKPCA
SQRLFLPLILKGVDSLLYVDTDVLFLRPVDDIWSLLERFNSTQIAAMAPEHEEPRVGWYNRFAR
HPYYGRTGVNSGVMLMNMTRMRRKYFKNDMTTARLQWGDILMPLLKKYKLNITWGDQDLLNIMF
YHNPESLFVFPCQWNYRPDHCIYGSNCREAEEEGVFILHGNRGVYHDDKQPAFRAMYEALRNCS
LEDDSVRSLLKPLELELQKTVHTYCGKTYKIFIKQLAKSIRNRYDTPPKER

hide sequence

RefSeq Acc Id:	XP_006242254 ⟸ XM_006242192
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AFF2 (UniProtKB/TrEMBL), A6K7S5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRYLRVVGLCLACGFCSLLYAFSQLAVSLEEGAAVGRRPQAAVASWLADGGRGTGRGAGSAGP GRTGRYGLKTRPTEKMHLAVVACGDRLEETVTMLKSALIFSIKPLHVHIFAEDQLHDSFKDRLD SWSFLQRFNYSLYPITFPSDSAMEWKKLFKPCASQRLFLPLILKGVDSLLYVDTDVLFLRPVDD IWSLLERFNSTQIAAMAPEHEEPRVGWYNRFARHPYYGRTGVNSGVMLMNMTRMRRKYFKNDMT TARLQWGDILMPLLKKYKLNITWGDQDLLNIMFYHNPESLFVFPCQWNYRPDHCIYGSNCREAE EEGVFILHGNRGVYHDDKQPAFRAMYEALRNCSLEDDSVRSLLKPLELELQKTVHTYCGKTYKI FIKQLAKSIRNRYDTPPKER hide sequence

Ensembl Acc Id:

ENSRNOP00000055150 ⟸ ENSRNOT00000058349

Ensembl Acc Id:

ENSRNOP00000073028 ⟸ ENSRNOT00000081104

RefSeq Acc Id:	XP_038934832 ⟸ XM_039078904
- Peptide Label:	isoform X2
- UniProtKB:	B2RZ91 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934835 ⟸ XM_039078907
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038934833 ⟸ XM_039078905
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038934834 ⟸ XM_039078906
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000091433 ⟸ ENSRNOT00000099240

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6GX83-F1-model_v2	AlphaFold	Q6GX83	1-435	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695600

Promoter ID:

EPDNEW_R6125

Type:

multiple initiation site

Name:

Gxylt1_1

Description:

glucoside xylosyltransferase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	134,495,859 - 134,495,919	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563062	AgrOrtholog
BioCyc Gene	G2FUF-32340	BioCyc
Ensembl Genes	ENSRNOG00000005234	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055011748	UniProtKB/Swiss-Prot
	ENSRNOG00060006500	UniProtKB/Swiss-Prot
	ENSRNOG00065016694	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000058349.4	UniProtKB/Swiss-Prot
	ENSRNOT00000081104.2	UniProtKB/TrEMBL
	ENSRNOT00000099240.1	UniProtKB/TrEMBL
	ENSRNOT00055019968	UniProtKB/Swiss-Prot
	ENSRNOT00060010653	UniProtKB/Swiss-Prot
	ENSRNOT00065027844	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:8363586	IMAGE-MGC_LOAD
InterPro	Glyco_trans_8	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glycosyltransferase_8	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Nucleotide-diphossugar_trans	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:300173	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:189392	IMAGE-MGC_LOAD
NCBI Gene	300173	ENTREZGENE
PANTHER	GLUCOSIDE XYLOSYLTRANSFERASE 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	IP22168P	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Glyco_transf_8	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Gxylt1	PhenoGen
RatGTEx	ENSRNOG00000005234	RatGTEx
	ENSRNOG00055011748	RatGTEx
	ENSRNOG00060006500	RatGTEx
	ENSRNOG00065016694	RatGTEx
Superfamily-SCOP	SSF53448	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6AFF2	ENTREZGENE, UniProtKB/TrEMBL
	A6K7S5	ENTREZGENE, UniProtKB/TrEMBL
	A6K7S6	ENTREZGENE, UniProtKB/TrEMBL
	B2RZ91	ENTREZGENE, UniProtKB/TrEMBL
	GXLT1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Gxylt1	glucoside xylosyltransferase 1	Glt8d3	glycosyltransferase 8 domain containing 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-04	Glt8d3	glycosyltransferase 8 domain containing 3	LOC300173	similar to CG9996-PA	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC300173	similar to CG9996-PA			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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