Scaf11 (SR-related CTD-associated factor 11) - Rat Genome Database

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Gene: Scaf11 (SR-related CTD-associated factor 11) Rattus norvegicus
Analyze
Symbol: Scaf11
Name: SR-related CTD-associated factor 11
RGD ID: 1598325
Description: Predicted to enable metal ion binding activity. Predicted to be involved in spliceosomal complex assembly. Predicted to be located in nuclear body and nucleolus. Orthologous to human SCAF11 (SR-related CTD associated factor 11); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; diuron.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC312030; serine/arginine-rich splicing factor 2, interacting protein; SFRS2-interacting protein; Sfrs2ip; similar to splicing factor, arginine/serine-rich 2, interacting protein; splicing factor, arginine/serine-rich 2, interacting protein; Srsf2ip
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Scaf11-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27127,571,678 - 127,623,915 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7127,574,463 - 127,624,101 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7129,372,444 - 129,424,839 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07131,597,961 - 131,650,354 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07131,518,839 - 131,571,169 (-)NCBIRnor_WKY
Rnor_6.07137,804,019 - 137,856,337 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7137,804,019 - 137,856,485 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07137,436,043 - 137,488,361 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47135,088,641 - 135,138,269 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7124,076,710 - 124,128,927 (-)NCBICelera
Cytogenetic Map7q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear body  (IEA,ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9447963   PMID:22658674   PMID:22681889   PMID:25931508   PMID:30361391  


Genomics

Comparative Map Data
Scaf11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27127,571,678 - 127,623,915 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7127,574,463 - 127,624,101 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7129,372,444 - 129,424,839 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07131,597,961 - 131,650,354 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07131,518,839 - 131,571,169 (-)NCBIRnor_WKY
Rnor_6.07137,804,019 - 137,856,337 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7137,804,019 - 137,856,485 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07137,436,043 - 137,488,361 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47135,088,641 - 135,138,269 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7124,076,710 - 124,128,927 (-)NCBICelera
Cytogenetic Map7q35NCBI
SCAF11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381245,919,131 - 45,992,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1245,919,131 - 45,992,120 (-)EnsemblGRCh38hg38GRCh38
GRCh371246,312,914 - 46,384,357 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361244,599,181 - 44,670,668 (-)NCBINCBI36Build 36hg18NCBI36
Build 341244,601,458 - 44,610,015NCBI
Celera1245,110,253 - 45,181,745 (-)NCBICelera
Cytogenetic Map12q12NCBI
HuRef1243,343,703 - 43,415,274 (-)NCBIHuRef
CHM1_11246,277,803 - 46,349,280 (-)NCBICHM1_1
T2T-CHM13v2.01245,878,717 - 45,950,122 (-)NCBIT2T-CHM13v2.0
Scaf11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391596,309,579 - 96,358,886 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1596,309,580 - 96,358,724 (-)EnsemblGRCm39 Ensembl
GRCm381596,411,698 - 96,460,988 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1596,411,699 - 96,460,843 (-)EnsemblGRCm38mm10GRCm38
MGSCv371596,242,129 - 96,291,274 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361596,242,610 - 96,288,858 (-)NCBIMGSCv36mm8
Celera1598,562,854 - 98,597,741 (-)NCBICelera
Cytogenetic Map15F1NCBI
Scaf11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555005,186,954 - 5,229,887 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555005,187,112 - 5,229,929 (-)NCBIChiLan1.0ChiLan1.0
SCAF11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11243,603,961 - 43,678,883 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1243,633,640 - 43,675,988 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01242,732,783 - 42,810,650 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SCAF11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,343,501 - 8,396,735 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,324,170 - 8,395,285 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2737,915,498 - 37,989,388 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0278,518,372 - 8,592,412 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl278,518,096 - 8,717,938 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,326,196 - 8,400,075 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0278,365,392 - 8,439,240 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02738,154,509 - 38,228,437 (-)NCBIUU_Cfam_GSD_1.0
Scaf11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494568,878,610 - 68,957,625 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365124,209,231 - 4,286,227 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCAF11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl576,809,514 - 76,848,660 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1576,809,441 - 76,876,653 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2579,736,662 - 79,785,643 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCAF11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11142,132,550 - 42,209,387 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1142,129,779 - 42,209,402 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037204,227,981 - 204,311,573 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scaf11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248166,233,587 - 6,314,926 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
BE110221  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27127,625,403 - 127,625,558 (+)MAPPERmRatBN7.2
Rnor_6.07137,857,973 - 137,858,127NCBIRnor6.0
Rnor_5.07137,489,997 - 137,490,151UniSTSRnor5.0
RGSC_v3.47135,139,584 - 135,139,738UniSTSRGSC3.4
Celera7124,130,726 - 124,130,880UniSTS
RH 3.4 Map71095.3UniSTS
Cytogenetic Map7q35UniSTS
RH140182  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27127,573,739 - 127,573,957 (+)MAPPERmRatBN7.2
Rnor_6.07137,806,081 - 137,806,298NCBIRnor6.0
Rnor_5.07137,438,105 - 137,438,322UniSTSRnor5.0
RGSC_v3.47135,087,905 - 135,088,122UniSTSRGSC3.4
Celera7124,078,772 - 124,078,989UniSTS
RH 3.4 Map71094.3UniSTS
Cytogenetic Map7q35UniSTS
RH128657  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27127,574,595 - 127,574,792 (+)MAPPERmRatBN7.2
Rnor_6.07137,807,027 - 137,807,223NCBIRnor6.0
Rnor_5.07137,439,051 - 137,439,247UniSTSRnor5.0
RGSC_v3.47135,088,761 - 135,088,957UniSTSRGSC3.4
Celera7124,079,628 - 124,079,824UniSTS
RH 3.4 Map71094.0UniSTS
Cytogenetic Map7q35UniSTS
RH136978  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27127,571,743 - 127,571,951 (+)MAPPERmRatBN7.2
Rnor_6.07137,804,085 - 137,804,292NCBIRnor6.0
Rnor_5.07137,436,109 - 137,436,316UniSTSRnor5.0
RGSC_v3.47135,085,909 - 135,086,116UniSTSRGSC3.4
Celera7124,076,776 - 124,076,983UniSTS
RH 3.4 Map71127.6UniSTS
Cytogenetic Map7q35UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:32
Interacting mature miRNAs:34
Transcripts:ENSRNOT00000007003
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 40 55 39 19 39 8 10 74 35 36 11 8
Low 3 2 2 2 1 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000007003   ⟹   ENSRNOP00000007003
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7127,574,480 - 127,624,101 (-)Ensembl
Rnor_6.0 Ensembl7137,804,019 - 137,856,485 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109436   ⟹   ENSRNOP00000092745
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7127,574,463 - 127,624,101 (-)Ensembl
RefSeq Acc Id: NM_001271170   ⟹   NP_001258099
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27127,571,678 - 127,623,915 (-)NCBI
Rnor_6.07137,804,019 - 137,856,337 (-)NCBI
Rnor_5.07137,436,043 - 137,488,361 (-)NCBI
Celera7124,076,710 - 124,128,927 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001258099 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL87121 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001258099   ⟸   NM_001271170
- Sequence:
RefSeq Acc Id: ENSRNOP00000007003   ⟸   ENSRNOT00000007003
RefSeq Acc Id: ENSRNOP00000092745   ⟸   ENSRNOT00000109436
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ABH1-F1-model_v2 AlphaFold D4ABH1 1-1439 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1598325 AgrOrtholog
BioCyc Gene G2FUF-32259 BioCyc
Ensembl Genes ENSRNOG00000005263 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000007003 ENTREZGENE
  ENSRNOP00000007003.8 UniProtKB/TrEMBL
  ENSRNOP00000092745.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007003 ENTREZGENE
  ENSRNOT00000007003.8 UniProtKB/TrEMBL
  ENSRNOT00000109436.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene 312030 ENTREZGENE
PhenoGen Scaf11 PhenoGen
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
UniProt A0A8I6GKB6_RAT UniProtKB/TrEMBL
  D4ABH1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Scaf11  SR-related CTD-associated factor 11  LOC681974  similar to splicing factor, arginine/serine-rich 2, interacting protein  Data Merged 1643240 APPROVED
2011-08-01 Scaf11  SR-related CTD-associated factor 11  Sfrs2ip  splicing factor, arginine/serine-rich 2, interacting protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-22 Sfrs2ip  splicing factor, arginine/serine-rich 2, interacting protein  Scaf11  SR-related CTD-associated factor 11   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-13 Scaf11  SR-related CTD-associated factor 11   Sfrs2ip  splicing factor, arginine/serine-rich 2, interacting protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-09-20 Sfrs2ip  splicing factor, arginine/serine-rich 2, interacting protein  Srsf2ip  serine/arginine-rich splicing factor 2, interacting protein   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-09-14 Srsf2ip  serine/arginine-rich splicing factor 2, interacting protein   Sfrs2ip  splicing factor, arginine/serine-rich 2, interacting protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Sfrs2ip  splicing factor, arginine/serine-rich 2, interacting protein  LOC312030  similar to splicing factor, arginine/serine-rich 2, interacting protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC312030  similar to splicing factor, arginine/serine-rich 2, interacting protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC681974  similar to splicing factor, arginine/serine-rich 2, interacting protein      Symbol and Name status set to provisional 70820 PROVISIONAL