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Gene: Ncaph2 (non-SMC condensin II complex, subunit H2) Rattus norvegicus

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Symbol:

Ncaph2

Name:

non-SMC condensin II complex, subunit H2

RGD ID:

1565937

Description:

Predicted to enable chromatin binding activity. Predicted to be involved in meiotic chromosome condensation; nuclear chromosome segregation; and regulation of chromosome segregation. Predicted to act upstream of or within T cell differentiation in thymus. Predicted to be located in cell junction; intercellular bridge; and nuclear lumen. Predicted to be part of condensin complex. Predicted to be active in chromosome and nucleus. Orthologous to human NCAPH2 (non-SMC condensin II complex subunit H2); INTERACTS WITH 17alpha-ethynylestradiol; acrylamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

condensin-2 complex subunit H2; MGC114417; non-SMC condensin II complex subunit H2; similar to hypothetical protein D15Ertd785e

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	122,302,550 - 122,319,570 (+)	NCBI		GRCr8
mRatBN7.2	7	120,422,926 - 120,439,942 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	120,422,956 - 120,439,938 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	122,173,646 - 122,191,436 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	124,399,800 - 124,417,590 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	124,362,467 - 124,380,299 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	130,326,597 - 130,343,655 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	130,326,600 - 130,342,493 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	130,011,904 - 130,028,836 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	127,650,768 - 127,666,461 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	116,890,045 - 116,911,675 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

chromosome 22q13 duplication syndrome (ISO)

congenital disorder of glycosylation Ig (ISO)

COX deficiency, infantile mitochondrial myopathy (ISO)

cytochrome-c oxidase deficiency disease (ISO)

dilated cardiomyopathy (ISO)

epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

megaconial type congenital muscular dystrophy (ISO)

metachromatic leukodystrophy (ISO)

mitochondrial complex IV deficiency nuclear type 1 (ISO)

mitochondrial complex IV deficiency nuclear type 2 (ISO)

mitochondrial DNA depletion syndrome 1 (ISO)

mitochondrial DNA depletion syndrome 8A (ISO)

Mitochondrial DNA Depletion Syndrome, MNGIE Type (ISO)

Myopia 6 (ISO)

Phelan-McDermid syndrome (ISO)

visual epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

Aroclor 1254 (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (EXP,ISO)

chromium(6+) (ISO)

cisplatin (ISO)

corticosterone (EXP)

coumarin (ISO)

coumestrol (ISO)

DDE (ISO)

ethanol (ISO)

fenthion (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

glyphosate (EXP)

hydrogen cyanide (ISO)

hydrogen peroxide (ISO)

hypochlorous acid (ISO)

ivermectin (ISO)

methyl methanesulfonate (ISO)

N-ethyl-N-nitrosourea (ISO)

nickel atom (ISO)

nitrates (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

potassium cyanide (ISO)

quercetin (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

tributylstannane (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromosome condensation (IEA)

female meiosis chromosome separation (IEA,ISO)

female meiotic nuclear division (IEA,ISO)

meiotic chromosome condensation (IBA,IEA,ISO)

mitotic chromosome condensation (IEA,ISO,ISS)

mitotic sister chromatid separation (IBA,IEA,ISO)

positive regulation of chromosome segregation (IEA,ISO)

positive regulation of chromosome separation (IEA,ISO)

T cell differentiation in thymus (IEA,ISO)

Cellular Component

cell junction (IEA,ISO)

chromosome (IEA,ISO)

condensed chromosome (IEA,ISO)

condensed nuclear chromosome (IEA,ISO)

condensin complex (IBA,IEA,ISO)

intercellular bridge (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

chromatin binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:17640884	PMID:19946888	PMID:21795393	PMID:25474630	PMID:25961503	PMID:27737959	PMID:27737961

Genomics

Comparative Map Data

Ncaph2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	122,302,550 - 122,319,570 (+)	NCBI		GRCr8
mRatBN7.2	7	120,422,926 - 120,439,942 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	120,422,956 - 120,439,938 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	122,173,646 - 122,191,436 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	124,399,800 - 124,417,590 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	124,362,467 - 124,380,299 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	130,326,597 - 130,343,655 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	130,326,600 - 130,342,493 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	130,011,904 - 130,028,836 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	127,650,768 - 127,666,461 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	116,890,045 - 116,911,675 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

NCAPH2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	50,508,224 - 50,524,780 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	50,508,224 - 50,524,780 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	50,946,653 - 50,963,209 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	49,293,511 - 49,308,782 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	34,822,672 - 34,839,236 (+)	NCBI		Celera
Cytogenetic Map	22	q13.33	NCBI
HuRef	22	33,837,777 - 33,854,227 (+)	NCBI		HuRef
CHM1_1	22	50,905,383 - 50,921,946 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	51,018,752 - 51,035,345 (+)	NCBI		T2T-CHM13v2.0

Ncaph2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	89,239,920 - 89,257,030 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	89,239,922 - 89,257,029 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	89,355,719 - 89,372,850 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	89,355,719 - 89,372,826 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	89,186,153 - 89,203,259 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	89,183,539 - 89,200,593 (+)	NCBI		MGSCv36	mm8
Celera	15	91,484,861 - 91,501,969 (+)	NCBI		Celera
Cytogenetic Map	15	E3	NCBI
cM Map	15	44.84	NCBI

Ncaph2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955413	33,492,348 - 33,503,804 (+)	NCBI	ChiLan1.0	ChiLan1.0

NCAPH2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	60,428,408 - 60,444,629 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	63,119,266 - 63,134,153 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	30,754,994 - 30,771,103 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	49,872,496 - 49,881,027 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	49,873,223 - 49,881,027 (+)	Ensembl	panpan1.1		panPan2

NCAPH2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	16,790,137 - 16,801,851 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	16,741,761 - 16,801,824 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	16,767,846 - 16,779,558 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	17,516,609 - 17,528,431 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	17,515,284 - 17,528,433 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	17,240,896 - 17,252,608 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	17,563,917 - 17,575,625 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	17,696,140 - 17,707,852 (-)	NCBI		UU_Cfam_GSD_1.0

Ncaph2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	320,877 - 332,110 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936629	321,011 - 327,607 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936629	320,885 - 327,290 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NCAPH2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	221,471 - 233,475 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	222,784 - 233,491 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	110,546,808 - 110,557,516 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NCAPH2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	32,978,771 - 32,995,055 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	32,978,562 - 32,997,160 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	92,346,255 - 92,356,666 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ncaph2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	258,039 - 268,737 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	257,885 - 268,971 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ncaph2
99 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	62
Count of miRNA genes:	57
Interacting mature miRNAs:	61
Transcripts:	ENSRNOT00000055808
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	119513385	135012528	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	111182207	135012528	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	80221299	124373579	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	102297359	133492884	Rat
2298475	Eau6	Experimental allergic uveoretinitis QTL 6		0.0029	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	7	84257275	129257275	Rat
71114	Niddm14	Non-insulin dependent diabetes mellitus QTL 14	4.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	84257275	129257275	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	91412594	129807172	Rat
1357339	Stl14	Serum triglyceride level QTL 14	3.45	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	112729683	133492707	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	73829340	130221005	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	83153392	128153392	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	81737938	126737938	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat
631663	Bw6	Body weight QTL 6	3.4		body mass (VT:0001259)	body weight (CMO:0000012)	7	111075573	134976056	Rat
1558655	Swd4	Spike wave discharge measurement QTL 4	3.68	0.0002	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge severity grade (CMO:0001988)	7	86983365	131983365	Rat
631201	Panci1	Pancreas inflammation QTL 1	0	0.001	pancreas integrity trait (VT:0010560)	percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)	7	116677189	127103496	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	80221299	125221299	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	112308254	133492884	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
1582240	Sffal1	Serum free fatty acids level QTL 1	3.4	0.0021	blood free fatty acid amount (VT:0001553)	serum free fatty acids level (CMO:0000547)	7	116677010	124049952	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat

Markers in Region

RH128722

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	120,438,507 - 120,438,709 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	130,342,221 - 130,342,422	NCBI	Rnor6.0
Rnor_5.0	7	130,027,402 - 130,027,603	UniSTS	Rnor5.0
RGSC_v3.4	7	127,666,258 - 127,666,459	UniSTS	RGSC3.4
Celera	7	116,911,472 - 116,911,673	UniSTS
RH 3.4 Map	7	948.7	UniSTS
Cytogenetic Map	7	q34	UniSTS

RH133077

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	120,418,599 - 120,418,798 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	130,322,275 - 130,322,473	NCBI	Rnor6.0
Rnor_5.0	7	130,007,576 - 130,007,774	UniSTS	Rnor5.0
RGSC_v3.4	7	127,646,391 - 127,646,589	UniSTS	RGSC3.4
Celera	7	116,892,413 - 116,892,611	UniSTS
RH 3.4 Map	7	958.3	UniSTS
Cytogenetic Map	7	q34	UniSTS

RH139883

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	120,438,861 - 120,439,050 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	130,342,575 - 130,342,763	NCBI	Rnor6.0
Rnor_5.0	7	130,027,756 - 130,027,944	UniSTS	Rnor5.0
RGSC_v3.4	7	127,666,612 - 127,666,800	UniSTS	RGSC3.4
Celera	7	116,911,826 - 116,912,014	UniSTS
RH 3.4 Map	7	961.8	UniSTS
Cytogenetic Map	7	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC084702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC097379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000055808 ⟹ ENSRNOP00000052664

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	120,422,975 - 120,438,710 (+)	Ensembl
Rnor_6.0 Ensembl	7	130,326,650 - 130,342,423 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084776 ⟹ ENSRNOP00000073049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	120,422,956 - 120,439,938 (+)	Ensembl
Rnor_6.0 Ensembl	7	130,326,600 - 130,342,493 (+)	Ensembl

RefSeq Acc Id:

NM_001024877 ⟹ NP_001020048

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,302,579 - 122,319,570 (+)	NCBI
mRatBN7.2	7	120,422,951 - 120,439,942 (+)	NCBI
Rnor_6.0	7	130,326,650 - 130,342,424 (+)	NCBI
Rnor_5.0	7	130,011,904 - 130,028,836 (+)	NCBI
RGSC_v3.4	7	127,650,768 - 127,666,461 (+)	RGD
Celera	7	116,890,045 - 116,911,675 (+)	RGD

Sequence:

show sequence

CCAGTAGCAGGTTGAACCAAGTTTCCGGGCCTCTAGTCCCTTTCTGGACATGGAGGATGTGGAG
GTGCGCTTTGCTCACCTCTTGCAGCCCATCCGAGATCTCACTAAGAACTGGGAGGTGGACGTGG
CGGCTCAGCTGGGCGAGTATCTGGAGGAGTGTAAAGGGTCTGTCTGCTGTAGTTTGTCCCAGTT
GGCTTTTGACCTTGTGGGGGGCGCATGTACAATTTGGAGTGCTGGTGAGAGCTGCTGGACCAGA
TCTGCATTTCTTTTGATGAAGGTAAAACCACGATGAACTTCATTGAGGCAGCACTGTTGATCCA
GGGTTCAGCCTGTGTCTACAGTAAAAAGGTGGAATACCTCTACTCGCTGGTCTACCAGGCTCTC
GACTTTATCTCAGGCAAGAGGCGAGCCAAGCAGCTTTCTTTAGTGCAGGAAGATGGGAGCAACC
GGGCTGTCAACTCAGGGACTCCCTGTGAAACAGAGGATGAGTTCCTGTCACTGGATGACTTCCC
CGACTCCCGGGCTAACGTGGATCTGAAAAATGACCAGGCATCCAGTGAACTGCTTATCATTCCC
CTTCTGCCCATGGCCCTGGTGGCCCCTGATGAAGTGGAAAAGAGCAGCAACCCCTTGTACAGCT
GTCAGGGTGAGGTCTTGGCCAGCCGGAAGGATTTCAGGATGAACACATGTACCCCCGACCCCAG
AGGTTCCTTTATGTTGGATCCAGTGGGAATGTGTCCTGTGGAGCCTGTAGACGTGCACCCCATG
CCAAGGAGCCAGAAAGATGCTGAGGAGGCTGAGGAGCAGCCGATGGCAGTGTCGAGGAACGGGA
GTCCTGTGTCTGTGCGCAGCATCTCCCAAGAGCCAGATGGCCCAGCGCTCAGCAGTGGAGATGA
GGACGCAGAGGATGTAGCAGAGCTCCCGGAGGTTGCTCTAGAGCCTGCAGAGCCCAGGACCTCA
CAGCAGACTGCCATCTTGCCAAGGAGATACATGCTTCGGGAACGGCAAGGGGCCCCGGAACCTG
CCTCCCAGCCGCAGGAGACCCCAGACCCCTGGCAAAGCCTGGACCCTTTTGACTCCTTGGACTC
TAAGCTCTTCCAGAAAGGTAAACCCTATTCTGTGCCACCCGGTGTGGAGGAGGCTCCAGGACAG
AAGCGCAAAAGGAAGGGTGCCACCAAGTTGCAGGACTTCCACCAGTGGTACCTGGATGCCTATG
CTGAACACCCTGACGGCAGGAGGGCTCGGCGGAAGGGCCCAAGCTTTGCAGACATGGAAGTCCT
GTATTGGAAACACGTAAAAGAACAGCTCGAGACCCTTCAGAAGCTGCGGAGACGTAAGATGACC
GAGAGATGGCTACCTGGGGCCAAGCAGGACCTGTGGCCTGCAGAGGAGGAACGCTTGGAAGAGC
CCCTAGAAGACCTAGGGGTAGCAGATGACTTTCTAGAGGCCGAAGAGTACGTAGAAGAGTCTGA
GGGGGTGATGCCTAGGGAAGCTGCTGGCCTAGATGCAGAGGCCATACCAGAGTCCCTGAAATAC
GAGGAGCTGGTCCGAAGGAATGTGGAACTCTTCATTGCCACCTCCCAGAAGTTTATTCAGGAGA
CGGAGCTGAGCCAGCGCATCAGGGACTGGGAAGATACCATCCAGCCCCTGCTCCAGGAGCAGGA
GCAGCATGTGCCCTTTGATATCCACACCTACGGGGACCAGTTGGTTTCACGGTTCCCCCAGCTC
AATGAATGGTGCCCCTTTGCAGAGCTTGTGGCTGGGCAGCCTGCTTTTGAGGTGTGCCGCTCCA
TGCTGGCTTCCTTGCAACTGGCCAATGACTATACGGTGGAGATCACCCAGCAGCCAGGCCTGGA
GGCAGCTGTAGACACGATGTCTCTGAGACTGCTCACACATCAGCGAGCCCACATGCGCTTCCAG
ACCTATGCTGCCCCATCTATGGCCCAGCCTTGAGTGGACAGTGTTTAAGCAGGGGTAGAAGGTA
GTATATACCTGGAAGTCTTTGCCCGTTATGTGCTATAGGGCCATTCACTCCAGTGCTGCCTCCT
GGCTGGCCTAGCCTAATAAAGCGTTGCTACCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001399741 ⟹ NP_001386670

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,302,579 - 122,319,570 (+)	NCBI
mRatBN7.2	7	120,422,951 - 120,439,942 (+)	NCBI

RefSeq Acc Id:

XM_006242186 ⟹ XP_006242248

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,302,550 - 122,319,566 (+)	NCBI
mRatBN7.2	7	120,422,927 - 120,439,942 (+)	NCBI
Rnor_6.0	7	130,326,597 - 130,343,655 (+)	NCBI
Rnor_5.0	7	130,011,904 - 130,028,836 (+)	NCBI

Sequence:

show sequence

GCAGTGCCCTGGGTACGTACTTCCTGGGCGGGAACACCAAAATGGCGCCAGAACCAGTAGCAGG
TTGAACCAAGTTTCCGGGCCTCTAGTCCCTTTCTGGACATGGAGGATGTGGAGGTGCGCTTTGC
TCACCTCTTGCAGCCCATCCGAGATCTCACTAAGAACTGGGAGGTGGACGTGGCGGCTCAGCTG
GGCGAGTATCTGGAGGAGCTGGACCAGATCTGCATTTCTTTTGATGAAGGTAAAACCACGATGA
ACTTCATTGAGGCAGCACTGTTGATCCAGGGTTCAGCCTGTGTCTACAGTAAAAAGGTGGAATA
CCTCTACTCGCTGGTCTACCAGGCTCTCGACTTTATCTCAGGCAAGAGGCGAGCCAAGCAGCTT
TCTTTAGTGCAGGAAGATGGGAGCAACCGGGCTGTCAACTCAGGGACTCCCTGTGAAACAGAGG
ATGAGTTCCTGTCACTGGATGACTTCCCCGACTCCCGGGCTAACGTGGATCTGAAAAATGACCA
GGCATCCAGTGAACTGCTTATCATTCCCCTTCTGCCCATGGCCCTGGTGGCCCCTGATGAAGTG
GAAAAGAGCAGCAACCCCTTGTACAGCTGTCAGGGTGAGGTCTTGGCCAGCCGGAAGGATTTCA
GGATGAACACATGTACCCCCGACCCCAGAGGTTCCTTTATGTTGGATCCAGTGGGAATGTGTCC
TGTGGAGCCTGTAGACGTGCACCCCATGCCAAGGAGCCAGAAAGATGCTGAGGAGGCTGAGGAG
CAGCCGATGGCAGTGTCGAGGAACGGGAGTCCTGTGTCTGTGCGCAGCATCTCCCAAGAGCCAG
ATGGCCCAGCGCTCAGCAGTGGAGATGAGGACGCAGAGGATGTAGCAGAGCTCCCGGAGGTTGC
TCTAGAGCCTGCAGAGCCCAGGACCTCACAGCAGACTGCCATCTTGCCAAGGAGATACATGCTT
CGGGAACGGCAAGGGGCCCCGGAACCTGCCTCCCAGCCGCAGGAGACCCCAGACCCCTGGCAAA
GCCTGGACCCTTTTGACTCCTTGGACTCTAAGCTCTTCCAGAAAGGTAAACCCTATTCTGTGCC
ACCCGGTGTGGAGGAGGCTCCAGGACAGAAGCGCAAAAGGAAGGGTGCCACCAAGTTGCAGGAC
TTCCACCAGTGGTACCTGGATGCCTATGCTGAACACCCTGACGGCAGGAGGGCTCGGCGGAAGG
GCCCAAGCTTTGCAGACATGGAAGTCCTGTATTGGAAACACGTAAAAGAACAGCTCGAGACCCT
TCAGAAGCTGCGGAGACGTAAGATGACCGAGAGATGGCTACCTGGGGCCAAGCAGGACCTGTGG
CCTGCAGAGGAGGAACGCTTGGAAGAGCCCCTAGAAGACCTAGGGGTAGCAGCAGATGACTTTC
TAGAGGCCGAAGAGTACGTAGAAGAGTCTGAGGGGGTGATGCCTAGGGAAGCTGCTGGCCTAGA
TGCAGAGGCCATACCAGAGTCCCTGAAATACGAGGAGCTGGTCCGAAGGAATGTGGAACTCTTC
ATTGCCACCTCCCAGAAGTTTATTCAGGAGACGGAGCTGAGCCAGCGCATCAGGGACTGGGAAG
ATACCATCCAGCCCCTGCTCCAGGAGCAGGAGCAGCATGTGCCCTTTGATATCCACACCTACGG
GGACCAGTTGGTTTCACGGTTCCCCCAGCTCAATGAATGGTGCCCCTTTGCAGAGCTTGTGGCT
GGGCAGCCTGCTTTTGAGGTGTGCCGCTCCATGCTGGCTTCCTTGCAACTGGCCAATGACTATA
CGGTGGAGATCACCCAGCAGCCAGGCCTGGAGGCAGCTGTAGACACGATGTCTCTGAGACTGCT
CACACATCAGCGAGCCCACATGCGCTTCCAGACCTATGCTGCCCCATCTATGGCCCAGCCTTGA
GTGGACAGTGTTTAAGCAGGGGTAGAAGGTAGTATATACCTGGAAGTCTTTGCCCGTTATGTGC
TATAGGGCCATTCACTCCAGTGCTGCCTCCTGGCTGGCCTAGCCTAATAAAGCGTTGCTACCCC
ACCTGTTCACTCAACAAACCATTTAAATGGGCTGCTGGTACAGAGCATACACACAGATTAAGTA
CATCCATTTAATGACAGGGCCTAGGCAGTACACAGTTCAGGGCAGTATGCTATGGAAGGCAGCT
ATGTGCCGGCGTACACTCTCTACAATCTGCTCTGCTGACCTGCTACGACCATAGTAATCAGTGA
AGAGACCATCTGGGTTGAGCAAGTAGATGGCAATGGAATGGTCCACAATATAGTCCTGGTCCTC
GTCCTTGGGACCAGCGCTGTAGTATACACGGTAGTTGCGACTAGCATGGGCCACTTGTTCTGTA
GAACCAGTCAGACCCAGCAGCCTTGGGTGGAATTCTTGCACATATCGGGCCATGGCTGCCACGT
CATCTCGTTCTGGGTCCACAGTGACGAAGACAGGCTGCACCAGGGGCAGCTCAGGCTCTGCCTC
GAGCTTCTGCACTACCTGCACCAGCTTTTCCAGCTCATCGGGGCAAATATCAGGGCAGTGAGTA
AAACCAAAGTACATCAGCACCCACTGGCCTCGGAAGTCGGCTTTGCATCGAGGCTGGCCTTTGT
GGTCCAGTAGGCTGAAGTCACCCTGGCCCACAGCAGCCTGGCGCAGGGCCTCTGTCCGCTGTTG
TTGGCGCCACTGTTCCTTCTCAGCTCTAGCGGCCAGCCAGGCCCAGCCTAGCCCAGCCCCAAAC
AGGGCAGTGATCAACAGTCTAGTCCTTAGCCCAGGGCCTTGGTGTTGGCCTTGGCCTTGCCCCG
ACCAATGCCGGGAATTTATGTGCAGAGTTTCACCCCTTGAGATCCTGAGAAGGGGTTTGAACTG
AGAGAGCTTGGGCCAAGCTTTGGGCCCTAGAGCCAGTAGCATCATGGACCTGAAGCTCCTGAAA
AAAGAACAGAGGTGGCAGAAGTCAGAAAAGAACGGACAAGGTGCCTAGGCCTCCACTGCTGGAG
AAACATCTCCACATTCAACCAGGTTAGAGAGCTCCCTGCACTGGCTCGCCTGAACTCAGAACTG
CCCTGCCTTCAGCTGCACTTCAGGCAGCACCAAATATCCATAGCTGGTTTGCTCTAACTTAGTT
CTTTAACCAGGGACTCTCAGCCTCATTACCCACCCTATGGAGAACCCACACCACAACTGCCAGA
CTTCCCTGTGGGTGCCTGGAAGCACGGAGAGTATGAGTGCATGTCTCTATTTACAATAAATTGA
TTTTTTTAAAAAGGGA

hide sequence

RefSeq Acc Id:

XM_006242188 ⟹ XP_006242250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,302,578 - 122,319,566 (+)	NCBI
mRatBN7.2	7	120,422,958 - 120,439,942 (+)	NCBI
Rnor_6.0	7	130,326,632 - 130,343,655 (+)	NCBI
Rnor_5.0	7	130,011,904 - 130,028,836 (+)	NCBI

Sequence:

show sequence

ACCAAAATGGCGCCAGAACCAGTAGCAGGTTGAACCAAGTTTCCGGGCCTCTAGTCCCTTTCTG
GACATGGAGGATGTGGAGGTGCGCTTTGCTCACCTCTTGCAGCCCATCCGAGATCTCACTAAGA
ACTGGGAGGTGGACGTGGCGGCTCAGCTGGCTGGACCAGATCTGCATTTCTTTTGATGAAGGTA
AAACCACGATGAACTTCATTGAGGCAGCACTGTTGATCCAGGGTTCAGCCTGTGTCTACAGTAA
AAAGGTGGAATACCTCTACTCGCTGGTCTACCAGGCTCTCGACTTTATCTCAGGCAAGAGGCGA
GCCAAGCAGCTTTCTTTAGTGCAGGAAGATGGGAGCAACCGGGCTGTCAACTCAGGGACTCCCT
GTGAAACAGAGGATGAGTTCCTGTCACTGGATGACTTCCCCGACTCCCGGGCTAACGTGGATCT
GAAAAATGACCAGGCATCCAGTGAACTGCTTATCATTCCCCTTCTGCCCATGGCCCTGGTGGCC
CCTGATGAAGTGGAAAAGAGCAGCAACCCCTTGTACAGCTGTCAGGGTGAGGTCTTGGCCAGCC
GGAAGGATTTCAGGATGAACACATGTACCCCCGACCCCAGAGGTTCCTTTATGTTGGATCCAGT
GGGAATGTGTCCTGTGGAGCCTGTAGACGTGCACCCCATGCCAAGGAGCCAGAAAGATGCTGAG
GAGGCTGAGGAGCAGCCGATGGCAGTGTCGAGGAACGGGAGTCCTGTGTCTGTGCGCAGCATCT
CCCAAGAGCCAGATGGCCCAGCGCTCAGCAGTGGAGATGAGGACGCAGAGGATGTAGCAGAGCT
CCCGGAGGTTGCTCTAGAGCCTGCAGAGCCCAGGACCTCACAGCAGACTGCCATCTTGCCAAGG
AGATACATGCTTCGGGAACGGCAAGGGGCCCCGGAACCTGCCTCCCAGCCGCAGGAGACCCCAG
ACCCCTGGCAAAGCCTGGACCCTTTTGACTCCTTGGACTCTAAGCTCTTCCAGAAAGGTAAACC
CTATTCTGTGCCACCCGGTGTGGAGGAGGCTCCAGGACAGAAGCGCAAAAGGAAGGGTGCCACC
AAGTTGCAGGACTTCCACCAGTGGTACCTGGATGCCTATGCTGAACACCCTGACGGCAGGAGGG
CTCGGCGGAAGGGCCCAAGCTTTGCAGACATGGAAGTCCTGTATTGGAAACACGTAAAAGAACA
GCTCGAGACCCTTCAGAAGCTGCGGAGACGTAAGATGACCGAGAGATGGCTACCTGGGGCCAAG
CAGGACCTGTGGCCTGCAGAGGAGGAACGCTTGGAAGAGCCCCTAGAAGACCTAGGGGTAGCAG
CAGATGACTTTCTAGAGGCCGAAGAGTACGTAGAAGAGTCTGAGGGGGTGATGCCTAGGGAAGC
TGCTGGCCTAGATGCAGAGGCCATACCAGAGTCCCTGAAATACGAGGAGCTGGTCCGAAGGAAT
GTGGAACTCTTCATTGCCACCTCCCAGAAGTTTATTCAGGAGACGGAGCTGAGCCAGCGCATCA
GGGACTGGGAAGATACCATCCAGCCCCTGCTCCAGGAGCAGGAGCAGCATGTGCCCTTTGATAT
CCACACCTACGGGGACCAGTTGGTTTCACGGTTCCCCCAGCTCAATGAATGGTGCCCCTTTGCA
GAGCTTGTGGCTGGGCAGCCTGCTTTTGAGGTGTGCCGCTCCATGCTGGCTTCCTTGCAACTGG
CCAATGACTATACGGTGGAGATCACCCAGCAGCCAGGCCTGGAGGCAGCTGTAGACACGATGTC
TCTGAGACTGCTCACACATCAGCGAGCCCACATGCGCTTCCAGACCTATGCTGCCCCATCTATG
GCCCAGCCTTGAGTGGACAGTGTTTAAGCAGGGGTAGAAGGTAGTATATACCTGGAAGTCTTTG
CCCGTTATGTGCTATAGGGCCATTCACTCCAGTGCTGCCTCCTGGCTGGCCTAGCCTAATAAAG
CGTTGCTACCCCACCTGTTCACTCAACAAACCATTTAAATGGGCTGCTGGTACAGAGCATACAC
ACAGATTAAGTACATCCATTTAATGACAGGGCCTAGGCAGTACACAGTTCAGGGCAGTATGCTA
TGGAAGGCAGCTATGTGCCGGCGTACACTCTCTACAATCTGCTCTGCTGACCTGCTACGACCAT
AGTAATCAGTGAAGAGACCATCTGGGTTGAGCAAGTAGATGGCAATGGAATGGTCCACAATATA
GTCCTGGTCCTCGTCCTTGGGACCAGCGCTGTAGTATACACGGTAGTTGCGACTAGCATGGGCC
ACTTGTTCTGTAGAACCAGTCAGACCCAGCAGCCTTGGGTGGAATTCTTGCACATATCGGGCCA
TGGCTGCCACGTCATCTCGTTCTGGGTCCACAGTGACGAAGACAGGCTGCACCAGGGGCAGCTC
AGGCTCTGCCTCGAGCTTCTGCACTACCTGCACCAGCTTTTCCAGCTCATCGGGGCAAATATCA
GGGCAGTGAGTAAAACCAAAGTACATCAGCACCCACTGGCCTCGGAAGTCGGCTTTGCATCGAG
GCTGGCCTTTGTGGTCCAGTAGGCTGAAGTCACCCTGGCCCACAGCAGCCTGGCGCAGGGCCTC
TGTCCGCTGTTGTTGGCGCCACTGTTCCTTCTCAGCTCTAGCGGCCAGCCAGGCCCAGCCTAGC
CCAGCCCCAAACAGGGCAGTGATCAACAGTCTAGTCCTTAGCCCAGGGCCTTGGTGTTGGCCTT
GGCCTTGCCCCGACCAATGCCGGGAATTTATGTGCAGAGTTTCACCCCTTGAGATCCTGAGAAG
GGGTTTGAACTGAGAGAGCTTGGGCCAAGCTTTGGGCCCTAGAGCCAGTAGCATCATGGACCTG
AAGCTCCTGAAAAAAGAACAGAGGTGGCAGAAGTCAGAAAAGAACGGACAAGGTGCCTAGGCCT
CCACTGCTGGAGAAACATCTCCACATTCAACCAGGTTAGAGAGCTCCCTGCACTGGCTCGCCTG
AACTCAGAACTGCCCTGCCTTCAGCTGCACTTCAGGCAGCACCAAATATCCATAGCTGGTTTGC
TCTAACTTAGTTCTTTAACCAGGGACTCTCAGCCTCATTACCCACCCTATGGAGAACCCACACC
ACAACTGCCAGACTTCCCTGTGGGTGCCTGGAAGCACGGAGAGTATGAGTGCATGTCTCTATTT
ACAATAAATTGATTTTTTTAAAAAGGGA

hide sequence

RefSeq Acc Id:

XM_063263347 ⟹ XP_063119417

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,302,566 - 122,319,566 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020048	(Get FASTA)	NCBI Sequence Viewer
	NP_001386670	(Get FASTA)	NCBI Sequence Viewer
	XP_006242248	(Get FASTA)	NCBI Sequence Viewer
	XP_006242250	(Get FASTA)	NCBI Sequence Viewer
	XP_063119417	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97379	(Get FASTA)	NCBI Sequence Viewer
	EDL76561	(Get FASTA)	NCBI Sequence Viewer
	EDL76562	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000052664
	ENSRNOP00000052664.3
	ENSRNOP00000073049
	ENSRNOP00000073049.2
	ENSRNOP00000098486
GenBank Protein	Q4V8I2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001020048 ⟸ NM_001024877
- Peptide Label:	isoform 2
- UniProtKB:	Q4V8I2 (UniProtKB/Swiss-Prot), A0A8L2QQZ1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNFIEAALLIQGSACVYSKKVEYLYSLVYQALDFISGKRRAKQLSLVQEDGSNRAVNSGTPCET EDEFLSLDDFPDSRANVDLKNDQASSELLIIPLLPMALVAPDEVEKSSNPLYSCQGEVLASRKD FRMNTCTPDPRGSFMLDPVGMCPVEPVDVHPMPRSQKDAEEAEEQPMAVSRNGSPVSVRSISQE PDGPALSSGDEDAEDVAELPEVALEPAEPRTSQQTAILPRRYMLRERQGAPEPASQPQETPDPW QSLDPFDSLDSKLFQKGKPYSVPPGVEEAPGQKRKRKGATKLQDFHQWYLDAYAEHPDGRRARR KGPSFADMEVLYWKHVKEQLETLQKLRRRKMTERWLPGAKQDLWPAEEERLEEPLEDLGVADDF LEAEEYVEESEGVMPREAAGLDAEAIPESLKYEELVRRNVELFIATSQKFIQETELSQRIRDWE DTIQPLLQEQEQHVPFDIHTYGDQLVSRFPQLNEWCPFAELVAGQPAFEVCRSMLASLQLANDY TVEITQQPGLEAAVDTMSLRLLTHQRAHMRFQTYAAPSMAQP hide sequence

RefSeq Acc Id:	XP_006242248 ⟸ XM_006242186
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K4H8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDVEVRFAHLLQPIRDLTKNWEVDVAAQLGEYLEELDQICISFDEGKTTMNFIEAALLIQGSA CVYSKKVEYLYSLVYQALDFISGKRRAKQLSLVQEDGSNRAVNSGTPCETEDEFLSLDDFPDSR ANVDLKNDQASSELLIIPLLPMALVAPDEVEKSSNPLYSCQGEVLASRKDFRMNTCTPDPRGSF MLDPVGMCPVEPVDVHPMPRSQKDAEEAEEQPMAVSRNGSPVSVRSISQEPDGPALSSGDEDAE DVAELPEVALEPAEPRTSQQTAILPRRYMLRERQGAPEPASQPQETPDPWQSLDPFDSLDSKLF QKGKPYSVPPGVEEAPGQKRKRKGATKLQDFHQWYLDAYAEHPDGRRARRKGPSFADMEVLYWK HVKEQLETLQKLRRRKMTERWLPGAKQDLWPAEEERLEEPLEDLGVAADDFLEAEEYVEESEGV MPREAAGLDAEAIPESLKYEELVRRNVELFIATSQKFIQETELSQRIRDWEDTIQPLLQEQEQH VPFDIHTYGDQLVSRFPQLNEWCPFAELVAGQPAFEVCRSMLASLQLANDYTVEITQQPGLEAA VDTMSLRLLTHQRAHMRFQTYAAPSMAQP hide sequence

RefSeq Acc Id:	XP_006242250 ⟸ XM_006242188
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2QQZ1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWRCALLTSCSPSEISLRTGRWTWRLSWLDQICISFDEGKTTMNFIEAALLIQGSACVYSKKVE YLYSLVYQALDFISGKRRAKQLSLVQEDGSNRAVNSGTPCETEDEFLSLDDFPDSRANVDLKND QASSELLIIPLLPMALVAPDEVEKSSNPLYSCQGEVLASRKDFRMNTCTPDPRGSFMLDPVGMC PVEPVDVHPMPRSQKDAEEAEEQPMAVSRNGSPVSVRSISQEPDGPALSSGDEDAEDVAELPEV ALEPAEPRTSQQTAILPRRYMLRERQGAPEPASQPQETPDPWQSLDPFDSLDSKLFQKGKPYSV PPGVEEAPGQKRKRKGATKLQDFHQWYLDAYAEHPDGRRARRKGPSFADMEVLYWKHVKEQLET LQKLRRRKMTERWLPGAKQDLWPAEEERLEEPLEDLGVAADDFLEAEEYVEESEGVMPREAAGL DAEAIPESLKYEELVRRNVELFIATSQKFIQETELSQRIRDWEDTIQPLLQEQEQHVPFDIHTY GDQLVSRFPQLNEWCPFAELVAGQPAFEVCRSMLASLQLANDYTVEITQQPGLEAAVDTMSLRL LTHQRAHMRFQTYAAPSMAQP hide sequence

Ensembl Acc Id:

ENSRNOP00000052664 ⟸ ENSRNOT00000055808

Ensembl Acc Id:

ENSRNOP00000073049 ⟸ ENSRNOT00000084776

RefSeq Acc Id:	NP_001386670 ⟸ NM_001399741
- Peptide Label:	isoform 1
- UniProtKB:	A0A0G2K4H8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119417 ⟸ XM_063263347
- Peptide Label:	isoform X3
- UniProtKB:	A0A8L2QQZ1 (UniProtKB/TrEMBL)

Protein Domains

Condensin II complex subunit H2 middle Condensin II complex subunit H2 N-terminal Condensin-2 complex subunit H2 C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4V8I2-F1-model_v2	AlphaFold	Q4V8I2	1-554	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695593

Promoter ID:

EPDNEW_R6110

Type:

multiple initiation site

Name:

Ncaph2_1

Description:

non-SMC condensin II complex, subunit H2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	130,326,615 - 130,326,675	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565937	AgrOrtholog
BioCyc Gene	G2FUF-32440	BioCyc
Ensembl Genes	ENSRNOG00000009598	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000055808	ENTREZGENE
	ENSRNOT00000055808.3	UniProtKB/TrEMBL
	ENSRNOT00000084776	ENTREZGENE
	ENSRNOT00000084776.2	UniProtKB/TrEMBL
	ENSRNOT00000120877	ENTREZGENE
IMAGE_CLONE	IMAGE:7445599	IMAGE-MGC_LOAD
InterPro	CNDH2_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	H2_M	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	H2_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ncaph2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:300149	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:114417	IMAGE-MGC_LOAD
NCBI Gene	300149	ENTREZGENE
PANTHER	CONDENSIN-2 COMPLEX SUBUNIT H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR14324	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	CNDH2_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CNDH2_M	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CNDH2_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ncaph2	PhenoGen
RatGTEx	ENSRNOG00000009598	RatGTEx
UniProt	A0A0G2K4H8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QQZ1	ENTREZGENE, UniProtKB/TrEMBL
	CNDH2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Ncaph2	non-SMC condensin II complex, subunit H2	MGC114417	similar to hypothetical protein D15Ertd785e	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	MGC114417	similar to hypothetical protein D15Ertd785e			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar