Slc38a1 (solute carrier family 38, member 1)

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Gene: Slc38a1 (solute carrier family 38, member 1) Rattus norvegicus

Analyze

Symbol:

Slc38a1

Name:

solute carrier family 38, member 1

RGD ID:

69645

Description:

Enables alanine:sodium symporter activity; glycine:sodium symporter activity; and proline:sodium symporter activity. Involved in several processes, including amino acid transport; glutamine metabolic process; and positive regulation of L-glutamine import across plasma membrane. Located in external side of apical plasma membrane and neuronal cell body. Biomarker of visual epilepsy. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human SLC38A1 (solute carrier family 38 member 1); PARTICIPATES IN glutamate signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; acetamide; amphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

amino acid transporter A1; amino acid transporter system A1; Ata1; GlnT; glutamine transporter; N-system amino acid transporter 2; rATA1; Sat1; sodium-coupled neutral amino acid symporter 1; sodium-coupled neutral amino acid transporter 1; solute carrier family 38 member 1; system A amino acid transporter 1; system A transporter 2; system N amino acid transporter 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	127,733,230 - 127,802,541 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	127,738,226 - 127,802,218 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	129,539,154 - 129,603,112 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	131,764,672 - 131,828,633 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	131,682,822 - 131,746,754 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	137,970,555 - 138,040,098 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	137,975,549 - 138,039,984 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	137,598,311 - 137,667,871 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	135,252,257 - 135,316,256 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	135,328,704 - 135,392,693 (-)	NCBI
Celera	7	124,242,806 - 124,306,590 (-)	NCBI		Celera
Cytogenetic Map	7	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

hepatocellular carcinoma (ISO)

visual epilepsy (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

acetamide (EXP)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

cadmium sulfate (ISO)

calyculin a (ISO)

cannabidiol (ISO)

cannabigerol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloropicrin (ISO)

chlorpyrifos (EXP,ISO)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

deguelin (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

diazinon (ISO)

dieldrin (EXP)

endosulfan (EXP)

ethanol (ISO)

fenpyroximate (ISO)

fenvalerate (EXP,ISO)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

gamma-aminobutyric acid (EXP)

geldanamycin (ISO)

graphite (EXP)

heptachlor (EXP)

hydrogen chloride (ISO)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

manganese atom (EXP)

manganese(0) (EXP)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mirex (EXP)

N,N-diethyl-m-toluamide (EXP)

nickel dichloride (ISO)

oxaliplatin (ISO)

paracetamol (EXP,ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

permethrin (EXP)

phytoestrogen (ISO)

pirinixic acid (ISO)

progesterone (EXP)

Pyridostigmine bromide (EXP)

quercetin (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sunitinib (ISO)

T-2 toxin (ISO)

temozolomide (ISO)

thapsigargin (ISO)

thifluzamide (ISO)

thimerosal (ISO)

thioacetamide (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vorinostat (ISO)

zearalenone (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alanine transport (IEA)

amino acid import (IDA)

amino acid transmembrane transport (IBA)

female pregnancy (IEP)

gamma-aminobutyric acid biosynthetic process (ISO,ISS)

glutamine metabolic process (IDA)

glutamine transport (IBA,ISO,ISS)

glycine transport (IEA)

inorganic cation transmembrane transport (IEA)

L-alpha-amino acid transmembrane transport (IDA)

monoatomic cation transmembrane transport (IEA)

neutral amino acid transport (IDA)

positive regulation of L-glutamine import across plasma membrane (IDA)

regulation of synaptic plasticity (ISO,ISS)

regulation of synaptic transmission, GABAergic (ISO,ISS)

sodium ion transport (IEA)

Cellular Component

axon (ISO)

basolateral plasma membrane (ISO)

external side of apical plasma membrane (IDA)

membrane (ISO)

neuronal cell body (IDA)

plasma membrane (IDA,ISO)

Molecular Function

alanine:sodium symporter activity (IDA)

amino acid:sodium symporter activity (IDA)

glycine:sodium symporter activity (IDA)

L-amino acid transmembrane transporter activity (IDA)

L-glutamine transmembrane transporter activity (IBA,ISO,ISS)

neutral L-amino acid:sodium symporter activity (IDA)

proline:sodium symporter activity (IDA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

glutamate signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Na+ transport by the neural glutamine transporter ATA1.	Albers A, etal., Pflugers Arch. 2001 Oct;443(1):92-101. doi: 10.1007/s004240100663.
2.	Functional expression of two system A glutamine transporter isoforms in rat auditory brainstem neurons.	Blot A, etal., Neuroscience. 2009 Dec 15;164(3):998-1008. doi: 10.1016/j.neuroscience.2009.09.015. Epub 2009 Sep 12.
3.	Glutamine uptake by neurons: interaction of protons with system a transporters.	Chaudhry FA, etal., J Neurosci 2002 Jan 1;22(1):62-72.
4.	Differential molecular regulation of glutamate in kindling resistant rats.	Doi T, etal., Brain Res. 2011 Feb 23;1375:1-6. doi: 10.1016/j.brainres.2010.11.085. Epub 2010 Dec 4.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Functional properties and cellular distribution of the system A glutamine transporter SNAT1 support specialized roles in central neurons.	Mackenzie B, etal., J Biol Chem 2003 Jun 27;278(26):23720-30. Epub 2003 Apr 8.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	Yes-associated protein 1 and transcriptional coactivator with PDZ-binding motif activate the mammalian target of rapamycin complex 1 pathway by regulating amino acid transporters in hepatocellular carcinoma.	Park YY, etal., Hepatology. 2016 Jan;63(1):159-72. doi: 10.1002/hep.28223. Epub 2015 Nov 26.
9.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
13.	Cloning and functional identification of a neuronal glutamine transporter.	Varoqui H, etal., J Biol Chem 2000 Feb 11;275(6):4049-54.
14.	Expression and role of SNAT3 in the placenta.	Yoshioka C, etal., Placenta. 2009 Dec;30(12):1071-7. doi: 10.1016/j.placenta.2009.09.009. Epub 2009 Nov 5.

Additional References at PubMed

PMID:11325958	PMID:12477932	PMID:15521011	PMID:16023720	PMID:16200463	PMID:17323379	PMID:20458337	PMID:20492358	PMID:20602128	PMID:25957749	PMID:26590355

Genomics

Comparative Map Data

Slc38a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	127,733,230 - 127,802,541 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	127,738,226 - 127,802,218 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	129,539,154 - 129,603,112 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	131,764,672 - 131,828,633 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	131,682,822 - 131,746,754 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	137,970,555 - 138,040,098 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	137,975,549 - 138,039,984 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	137,598,311 - 137,667,871 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	135,252,257 - 135,316,256 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	135,328,704 - 135,392,693 (-)	NCBI
Celera	7	124,242,806 - 124,306,590 (-)	NCBI		Celera
Cytogenetic Map	7	q35	NCBI

SLC38A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	46,183,063 - 46,269,043 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	46,183,063 - 46,270,017 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	46,576,846 - 46,662,826 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	44,863,105 - 44,949,475 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	44,867,850 - 44,948,816	NCBI
Celera	12	45,374,176 - 45,460,544 (-)	NCBI		Celera
Cytogenetic Map	12	q13.11	NCBI
HuRef	12	43,608,096 - 43,694,464 (-)	NCBI		HuRef
CHM1_1	12	46,541,943 - 46,628,310 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	46,142,659 - 46,228,603 (-)	NCBI		T2T-CHM13v2.0

Slc38a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	96,469,299 - 96,541,396 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	96,469,299 - 96,540,794 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	96,571,418 - 96,643,438 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	96,571,418 - 96,642,913 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	96,401,849 - 96,473,344 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	96,402,709 - 96,452,131 (-)	NCBI		MGSCv36	mm8
Celera	15	98,716,978 - 98,788,897 (-)	NCBI		Celera
Cytogenetic Map	15	F1	NCBI

Slc38a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955500	5,398,358 - 5,462,042 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955500	5,393,211 - 5,468,827 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC38A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	12	47,895,548 - 47,981,585 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	42,464,360 - 42,550,324 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	43,333,087 - 43,419,502 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	43,362,597 - 43,413,616 (+)	Ensembl	panpan1.1		panPan2

SLC38A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	8,110,327 - 8,179,394 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	8,130,823 - 8,174,936 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	38,127,750 - 38,197,361 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	8,309,904 - 8,379,147 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	8,309,945 - 8,379,526 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	8,117,874 - 8,187,129 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	8,156,867 - 8,221,929 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	38,367,553 - 38,436,859 (-)	NCBI		UU_Cfam_GSD_1.0

Slc38a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	68,660,514 - 68,726,003 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	4,444,684 - 4,487,165 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936512	4,438,827 - 4,504,416 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC38A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	77,009,862 - 77,058,427 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	77,009,840 - 77,076,723 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	79,935,364 - 80,001,646 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC38A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	42,415,986 - 42,502,794 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	42,421,910 - 42,472,838 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	203,924,850 - 204,006,548 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc38a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624816	5,989,601 - 6,025,987 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624816	5,988,625 - 6,025,987 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc38a1
586 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	63
Count of miRNA genes:	53
Interacting mature miRNAs:	59
Transcripts:	ENSRNOT00000008138
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	73829340	130221005	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	83153392	128153392	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
71114	Niddm14	Non-insulin dependent diabetes mellitus QTL 14	4.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	84257275	129257275	Rat
2298475	Eau6	Experimental allergic uveoretinitis QTL 6		0.0029	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	7	84257275	129257275	Rat
1558655	Swd4	Spike wave discharge measurement QTL 4	3.68	0.0002	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge severity grade (CMO:0001988)	7	86983365	131983365	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	91412594	129807172	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	102297359	133492884	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat
631663	Bw6	Body weight QTL 6	3.4		body mass (VT:0001259)	body weight (CMO:0000012)	7	111075573	134976056	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	111182207	135012528	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	112308254	133492884	Rat
1357339	Stl14	Serum triglyceride level QTL 14	3.45	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	112729683	133492707	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	119513385	135012528	Rat

Markers in Region

RH130789

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	127,803,358 - 127,803,530 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	138,040,771 - 138,040,942	NCBI	Rnor6.0
Rnor_5.0	7	137,668,527 - 137,668,698	UniSTS	Rnor5.0
RGSC_v3.4	7	135,317,397 - 135,317,568	UniSTS	RGSC3.4
Celera	7	124,307,731 - 124,307,902	UniSTS
RH 3.4 Map	7	1092.0	UniSTS
Cytogenetic Map	7	q35	UniSTS

RH131580

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	127,737,986 - 127,738,171 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	137,975,310 - 137,975,494	NCBI	Rnor6.0
Rnor_5.0	7	137,603,066 - 137,603,250	UniSTS	Rnor5.0
RGSC_v3.4	7	135,252,026 - 135,252,210	UniSTS	RGSC3.4
Celera	7	124,242,575 - 124,242,759	UniSTS
RH 3.4 Map	7	1092.0	UniSTS
Cytogenetic Map	7	q35	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	42	30	14	19	14	1	1	74	23	41	3	1
Low		1	21	21		21	7	10		12		8	7
Below cutoff			6	6		6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_138832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF075704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC097283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000008138 ⟹ ENSRNOP00000008138

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	127,738,226 - 127,802,218 (-)	Ensembl
Rnor_6.0 Ensembl	7	137,975,549 - 138,039,630 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000089806 ⟹ ENSRNOP00000070624

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	137,975,772 - 138,039,984 (-)	Ensembl

RefSeq Acc Id:

NM_138832 ⟹ NP_620187

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	127,738,218 - 127,802,218 (-)	NCBI
Rnor_6.0	7	137,975,541 - 138,039,630 (-)	NCBI
Rnor_5.0	7	137,598,311 - 137,667,871 (-)	NCBI
RGSC_v3.4	7	135,252,257 - 135,316,256 (-)	RGD
Celera	7	124,242,806 - 124,306,590 (-)	RGD

Sequence:

show sequence

GCGGATCCTCCCCGCCCAGTCTTACAGACCAGGGGCCACCTTTCCCTAGGCAGACCTTGACACC
AAGAGGACATCTAACTGCCGGGGACGGCCTGGAAGGGCGGACACTTTGGCGGCGCCTTTCCCTT
TATTTCTCGAGGGGTCTCGGGCATCTCTATTCACTGCTGTCTGCTACTCAAGGTCCTCAGAACA
GAAGACATTCGGATTGATTTCTTGACTACAGACACCCAAATATGATGCATTTCAAAAGTGGCCT
CGAGTTAACGGAGCTGCAGAACATGACGGTGCCCGAGGATGACAATGTCAGCAACGACTCTAAT
GACTTCACGGAAGTGGAGAACGGCCAGATAAATAGCAAGTTCATCTCTGATCGGGAGAGTAGGA
GGAGTCTCACGAACAGCCATCTGGAGAAAAGGAAATGCGACGAGTATATTCCAGGAACAACCTC
TCTGGGAATGTCTGTCTTTAACCTGAGCAACGCCATCATGGGCAGTGGGATCTTGGGCCTCGCC
TTCGCCTTGGCCAACACGGGGATCCTCCTGTTTCTGATACTTCTGACTTCGGTGACGTTACTGT
CTATATACTCAATAAACCTACTACTGATCTGCTCCAAGGAAACCGGCTGCATGGTCTACGAAAA
GCTGGGAGAGCAAGTCTTCGGCACCACGGGGAAGCTGGTGATCTTCGGAGCCACCTCTCTGCAG
AACACTGGCGCGATGCTGAGCTACCTCTTCATAGTGAAAAATGAACTTCCTTCAGCCATAAAAT
CCCTCATGGGAGAGGAGGAGACATTTTCAGCCTGGTACGTCGATGGCCGAGTGTTGGTGGTGAT
GGTAACCTTTGGCATAATTCTCCCGCTGTGTCTCTTGAAGAACCTGGGGTATCTTGGCTACACT
AGTGGATTTTCCTTGAGCTGCATGGTTTTTTTCCTGATAGTGGTCATCTACAAGAAATTTCAGA
TTCCTTGCATGAATGGGGAACAGAACTCAACAGTAAGTGCTAACGTGACTGACGCGTGCACACC
AAAGTATGTCACCTTCAACTCAAAGACGGTGTACGCTTTACCAACCATCGCGTTTGCGTTTGTC
TGCCACCCGTCTGTCCTGCCAATCTACAGCGAGCTCAAAGATCGGTCACAGAAAAAAATGCAGA
TGGTTTCCAACATCTCCTTCTTTGCTATGTTTGTCATGTACTTCCTGACCGCCATCTTTGGGTA
CCTGACCTTTTATGAAAAGGTGCAGTCAGACCTCCTTCACAAGTACCAGAGCACAGGCGACATT
CTCATCCTGACTGTGCGACTGGCCGTCATTGTGGCCGTCATCCTCACGGTGCCCGTACTGTTCT
TCACAGTCCGGTCCTCGTTGTTTGAGCTGGCCAAGAAGACGAAGTTCCACCTGTGTCGCCATGT
CCTGGTGACCATCATACTCCTTGTGATTATCAACCTGTTGGTGATCTTCATCCCATCCATGAAG
GATATATTTGGAGTCGTAGGGGTGACGTCTGCTAACATGCTCATTTTCATCCTTCCTTCGTCCC
TTTATTTAAAAATCACGAACCAGGATGGAGACAAGAATACTCAAAGGATTTGGGCGGCCCTTTT
CTTGGCCCTGGGGGTGTTGTTCTCCTTGATCAGCATCCCCCTAGTCATCTACGACTGGGCTTGC
TCCTCCAGCAATGGTGAAGGCCACTGAAACCAGCAGCGACCAACCCAGCACCTGCTCACACCCA
TCCAGTCCCCATCAGCAGTCCTCCTACTCTTCTTTTGCAAGTTTACAGAGACAGAAACGCACAG
AGCTCCTCTTGGGTTGCGACACAGAGACTCACTCCTAGAAGACTCATGCCCTCTCGGGACCGCC
GCTTAGGAACCTTGGATTCCCACCTCTCTGGATTTCGTGCAGCCGTCTTGTCCAGCCCTTCCCA
CAGTTCTCCTTCCCTCTCCTCACTGATGTGGCTTCTCTCTCTCAGAACTTCGGAAACATGATCA
ACAGTCGTCTTCACCTGTTAGATACCCAGCTCCTGAAGTCGTTTTCCTACTGACGCTCCGCCCA
CGCTATCTGGATCTTTTTAGAAGAGAAAATAATCTTGAATTGTATATATTTATTTTGCTTTATG
GAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242277 ⟹ XP_006242339

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	127,733,230 - 127,800,819 (-)	NCBI
Rnor_6.0	7	137,970,555 - 138,039,326 (-)	NCBI
Rnor_5.0	7	137,598,311 - 137,667,871 (-)	NCBI

Sequence:

show sequence

GTGTTGGCTTCAGGAACCGGCTTTACGGTTGCGGATCACTACTAACCCAGAGATGACGGTGGGG
TCACCCATAGGCGACGGGGACCCGCGCATCTGTTGCCATGGCAATTTCCATACATTCCCAGAGT
CCACCCGGCCCACCTCCCACCCTTACCTGCGAGTGGTTGCGTCACTGCCCAAATTAAAGGCAGA
CCCTTCCTGACCTTCGCCCCCCCACCCCCTTTTCCCGTCGTCGCTCCCTTTTGTCCTTTTCCCA
CAAATAAATCTCTCTCCCGTGGAACTGTGCTGGCCTGGTGTGGTCTGCCCGAACGCGAGCCGCG
ATTCTCACACAACAGCAGGGACCCCAGATTTCCACCTTTGCGTACCGTGCCTTACTTTGCGGAC
CTGGTTTTATGGTGGCGAAGTGTGGCACCAGATCCGGTTCCATTTTCGAAGGTTAGGGACCAGG
CTTGCGCTGTGAGGGGCAGTAGGTACACCGAGGAGTGTGAATCAGTCTGCATCTTGGGACTGGC
GGGGCAGCGGAGCTTCGGCGACTGGCTCCTCAGTGCCGTAAACACGTGCACGTTGGCTGCCCCT
CCGCGGGTTCGGCCCCTGTGTCCGCTCCAATTAGTGGGAGGATGCTGGCAGTGACTCACTTTCC
TCTCCGGAATGAAGAGCCAGCGATAGGCTACTTCCTTTAGGAGAGCCCGGGTCCGGTGGGGCGG
GAGAACAAAAGGCCACTGCTTGCGCAGGACCCTTGCGCCCTGATCTCCCCTCCCCCGCACCTGG
CCCCAAACGTTGCGGCAAAAGGATTTTAAACTGGTCGGCTCCACGCGGGGAGAAAAGCGCGCCG
AGATCTCCTGCAGCCCGCCTTCCTTTCACCCCACCCCACCCTCCGCGCCAACCCGGCTCGGGGT
ACGGAGCTGCTTCTCACCCTCGCGAACCGCGCGCGGTTCCTGGTGCATCGCCCGCCGCCGCGTT
TCAGCTCAACTGTGCTCGCACTAGACACGAGTGCATATGGCGGCAAAAGGAATTTCGCGGTAAG
CGCGTCACGGCGCGAACTGCCTTTCACAAGCTGCCTCGGGCCGAGGAAGGTGGTGCTTACTCCA
GCCCTTTGTGTCTCGCTCTGCGGCGTGGACCCGAGCTCTCTCTAGCCTCTTCCCATCGGTGGGA
AACACACTGGCTTGGTGGATCGCGTAGACAATAAACGTTTGTTGTACGTGGAAGAGAGCAAAGG
ATCCAACGCTAGAAAACGGGGTCTCGGGCATCTCTATTCACTGCTGTCTGCTACTCAAGGTCCT
CAGAACAGAAGACATTCGGATTGATTTCTTGACTACAGACACCCAAATATGATGCATTTCAAAA
GTGGCCTCGAGTTAACGGAGCTGCAGAACATGACGGTGCCCGAGGATGACAATGTCAGCAACGA
CTCTAATGACTTCACGGAAGTGGAGAACGGCCAGATAAATAGCAAGTTCATCTCTGATCGGGAG
AGTAGGAGGAGTCTCACGAACAGCCATCTGGAGAAAAGGAAATGCGACGAGTATATTCCAGGAA
CAACCTCTCTGGGAATGTCTGTCTTTAACCTGAGCAACGCCATCATGGGCAGTGGGATCTTGGG
CCTCGCCTTCGCCTTGGCCAACACGGGGATCCTCCTGTTTCTGATACTTCTGACTTCGGTGACG
TTACTGTCTATATACTCAATAAACCTACTACTGATCTGCTCCAAGGAAACCGGCTGCATGGTCT
ACGAAAAGCTGGGAGAGCAAGTCTTCGGCACCACGGGGAAGCTGGTGATCTTCGGAGCCACCTC
TCTGCAGAACACTGGCGCGATGCTGAGCTACCTCTTCATAGTGAAAAATGAACTTCCTTCAGCC
ATAAAATCCCTCATGGGAGAGGAGGAGACATTTTCAGCCTGGTACGTCGATGGCCGAGTGTTGG
TGGTGATGGTAACCTTTGGCATAATTCTCCCGCTGTGTCTCTTGAAGAACCTGGGGTATCTTGG
CTACACTAGTGGATTTTCCTTGAGCTGCATGGTTTTTTTCCTGATAGTGGTCATCTACAAGAAA
TTTCAGATTCCTTGCATGAATGGGGAACAGAACTCAACAGTAAGTGCTAACGTGACTGACGCGT
GCACACCAAAGTATGTCACCTTCAACTCAAAGACGGTGTACGCTTTACCAACCATCGCGTTTGC
GTTTGTCTGCCACCCGTCTGTCCTGCCAATCTACAGCGAGCTCAAAGATCGGTCACAGAAAAAA
ATGCAGATGGTTTCCAACATCTCCTTCTTTGCTATGTTTGTCATGTACTTCCTGACCGCCATCT
TTGGGTACCTGACCTTTTATGAAAAGGTGCAGTCAGACCTCCTTCACAAGTACCAGAGCACAGG
CGACATTCTCATCCTGACTGTGCGACTGGCCGTCATTGTGGCCGTCATCCTCACGGTGCCCGTA
CTGTTCTTCACAGTCCGGTCCTCGTTGTTTGAGCTGGCCAAGAAGACGAAGTTCCACCTGTGTC
GCCATGTCCTGGTGACCATCATACTCCTTGTGATTATCAACCTGTTGGTGATCTTCATCCCATC
CATGAAGGATATATTTGGAGTCGTAGGGGTGACGTCTGCTAACATGCTCATTTTCATCCTTCCT
TCGTCCCTTTATTTAAAAATCACGAACCAGGATGGAGACAAGAATACTCAAAGGATTTGGGCGG
CCCTTTTCTTGGCCCTGGGGGTGTTGTTCTCCTTGATCAGCATCCCCCTAGTCATCTACGACTG
GGCTTGCTCCTCCAGCAATGGTGAAGGCCACTGAAACCAGCAGCGACCAACCCAGCACCTGCTC
ACACCCATCCAGTCCCCATCAGCAGTCCTCCTACTCTTCTTTTGCAAGTTTACAGAGACAGAAA
CGCACAGAGCTCCTCTTGGGTTGCGACACAGAGACTCACTCCTAGAAGACTCATGCCCTCTCGG
GACCGCCGCTTAGGAACCTTGGATTCCCACCTCTCTGGATTTCGTGCAGCCGTCTTGTCCAGCC
CTTCCCACAGTTCTCCTTCCCTCTCCTCACTGATGTGGCTTCTCTCTCTCAGAACTTCGGAAAC
ATGATCAACAGTCGTCTTCACCTGTTAGATACCCAGCTCCTGAAGTCGTTTTCCTACTGACGCT
CCGCCCACGCTATCTGGATCTTTTTAGAAGAGAAAATAATCTTGAATTGTATATATTTATTTTG
CTTTACGGAAAAAAAAATTACGGTTTCAGAGAAAAAAAAGGTTTCATAAATAATTTGCCTATTT
TGGTTAACATAGCACACGGGGTTAAATCCTTTGAGAGACAGGTTGCATGCCCTGGCTGCATCTG
AGCGTGCCCAATATTTGAGGCAGCTCTGATCACCTGACGGGGACTGTCCTGGGCCTGCTGGTGC
TCTGTCCTACTCCCACGGGGAGCGATTCCCTGGGAGCGTCTGTAGCTGTGAAGGCTTGGGCATG
GCGCCTCTGTATATATTAAAATACACATTCGGGAGATCTCAGGAATGAAACTTTGTTTCCCCTT
TGGCGTCTGGAGCATCTGCTACTCTAGGCTGAGTCACCTGCTTGGGCCCCCTTGGCTCCGTGTC
CGAGGATGTATTCCTTAACCAGACTACCTTCAGCCCACACCCACGTTGTTGAAGGGGGAAACGG
TTTGTTGGTTTGTGAGCCCGGCAGCCTTTAGTCAAGTTCACCAACTTTTCCGCCACAGAGGAGA
ATGTGTACCTGAGGGTGGCCTAGGATAGGTCAGCCTGTTTTATACTGGGTACTTTACTTTAATG
GAGTCTTTGAAAGACTTGTTTTATATCTATAAATCTAGGTTACTACAAATAGAAGATTTTTGTA
CCTTAAATAAGTCTCATTTCTATTCCCCATCAACTCACCATTCAGTCCTGAAAGCAAACCTCCC
AGAGAGAGGCTCAGTGGAGAGCCACTGAAGTCACTGTGTGTCCCCTCCTGCCACAGCTTTGAAT
GACAGGAGGCCCCTCCCCGTCTGTTTTTTTATCCCCTTGTATCCCATTACGCCTGTTCTGTGTG
ACCCAGGCAAGAGGGCAGAGTTGCCTATACTCTGTCCCTATCCCTGCCTAAGGGGAGCAGAGGG
AAACTTCAAGGAGACTGGAAACTAAGAGTTTCAGACACGGGCAGCTAGGGAACCTAGAGCAGCA
GCCTGCCCTCTGATGGGGATCCCTGTGGCTACCATAGCTTAGCCACAGCAGGTGAGGTGCACAC
GAGGTGCACACACGATGATCGTTCTCTGCAAATGGTCTGCATTGCAGCCAGCTGTGTTCTGGTT
GAAATCCTCAGATACAAAAACACACTGAGCACGGATTTCATACCGGGAGATGAGTAGACGCTAA
CCGAGTGGCCCGGACACTTAGCTATAGACGCCGTTCCTCCTGCCTGAAGTCCTGCAGACAGGGT
AGACATGAGAGTGCCTGCCGCTGTGTATCATTCTTCTCATAGTGCTTCACTGTTCCGTCCGCCT
CCTGTTCAGGCCGCCGACCACAGGGCCCAGGCAGGAGAAAGGGTAAACCCCACAGCCGTCTCCG
CCCTTTGCCCAAACGTTTCCCATGTCACGGGAAATGACGGAAGGTCCCGCCAACCTCTGTAGCT
CTGTTTGCACTGTTTAAAAAGATAAACATTAATTCAGTTTGCAAGCTGCATTCCCCTCTTGCTG
TCCCCCCCACCCCCTTTTCTGTAACATTTCAATTTTACATTCGCAAAGTGAATTCAAAAACTCA
CTAACTCTGGGACGTGTTGTGATTTTCGGACCTCTGGATTTTTGTGTTGGTAAAACAAATGTAT
TCACAGTGTACTTACTGGCAGGAAGCACATTGTTGTCGATGTCTGTGATGCGTGGGTTCTTTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAAAGCTCTT
TTGTATGTGTACCTGAGTTTGAATATAATGGGTCTTAATGTCATTTTGTCAGATACCACCAAGT
AATTCCATAGTTTCCGTGGTCGTCCTGTAAAGCGGGCTGTTCTTACACTTGTTCAGAATAATGA
ACCGACAGCCAGAACATACCTGCATCGCAGACGTCAGGTAGCATTCAGCAGAACAGTCAGACGT
AACAGATATTTTTCTGCTAAATTAGTAGACTCAAGCCTAGTAGGCCTCCACCGAGGGAAACCGA
TTTTTCCTTCGGCACATTGCTGGCCAGAGCCAGTTTCATACTTTGGGTTTAGAACTGTTCTCTG
GTTCTTGTAACACAGAATACTGTAGATTCCTAGATTAGTGTTGCTTTTTAGAAGTAGGGTTCCT
AGAGCCTGTGCAGAAGGAAAACCAACTCTTTCAGGCATGGTCTAGGCCTGATCACAGGGAGAAC
AGATTTTAAAGCTTTGTCACCTGGAGTGGATTTTTCTCCGTTGAGTTCGATGTGGCAGTTAGAC
CTGCCCAGAGCAGCTGGAAGAGGATGTTGAGCTGAAATGGAGTAACAGGACCGTGGAAGAGCTA
AGTCCCCAGATTGGCAGGAGATGGGGTGTGTCGGAGTCTCTAGGAATACCCCATTGCCTGTTGC
AGAATCTGGACCGTTGTCTCTGCCACAGATCACCTGCTGGGCAGTGGGGTCAGGGCTCCACACC
AGTGCCCTGAAGCACGGTCTCCTCTAAGATAAGAGGGGCTAAGTTCAAAACCCTGAGTGTAGGA
TGGTGGTCAAAGAAGAGGGGTCCCTAGGGTTCCCCTCCTTGCCTGCAGTTAACTTCATAGCTTC
TCCAGGGTACCAGCTTTGGTGCCAGCACACAGCACTCTCAACAGCTCCTGTGCGGGTAGCCATG
GGTTCACTGCTTGGTGATCAGATGAACAGTATGAAGGCTCCCCATCCTTCTTGTACATTTATGG
ACCCTGCAGAGAGACATAAGACCGTCGGGGTGGGTTGCAGAGGACTAAGGGCTGTAGCAGGATG
CCTCACTGTAACAATTATGCCAAGAATTCTGGGATTGAAGTCGAGTCCCCAAGCTGGTGTTTCT
CAAATTGTACACACACACACACACACACACACACACACACACACACACACACACACACACACCA
TCCCAGGCCAGCAGCAGGAACCTCATCTGGAGACTTAGCAGCAAATCGTCAGCCCCACCAGACT
CAGTGGGTAGAGCAACCTGTCCTCTGCAAGTCTGAGGTCCAGCCTCCAGGTGAGGCCGGTGACA
TCAAGCTTGGGAACCACTCAGCCCAGCCTCAGAAGGTGACTGGTTCTTGGTGTGAGGAATGAGG
GCCAGGAAAGGTAGAAAAGGACCCCACCAGTGTCTGCAGAGCAGGAAAGAGAGAACATCCTGGA
AGCCCCTACCTGTGTTCGGTCCTGCTGCCAATGCAGTGCAGGGGGTGAGTGAAACTTGGGGTGC
CTGCACTTTAGGGAACCTAGCCTGAGGCACTAGTCTGTTTTCTTACAGCTGTGAAGATTCCAAT
TGAGGCTTTCAGAAAACATAGGTAAATTTTAAAAAAAATGCGTTTTGCAAATGCAGCCCTAAAG
GGTACTGCTGAGTTTTTTAGGGGACCATGTCCGTGGTGGGGTGGGGTGCTCTCCTGGTGAAATT
CAGTCCCAGCACTGCAAAATAGAAAATACTGATACACAGAGTGTTCCGGTGACAGGTCTGCACT
GCTGAGGGAGCTGCAAGGGCAGCAGAGCCTGGTCTGATGCAGGAGCACTGTGTGAGGTGGCATC
TTTAACTGGACTAGGGCAGAGGTGGGAGGTGTGAGCATCTGTGTGGTTTCTACTTTACAGCAAA
GCCTCCATCCGGTTAGAACTAGAACGGGGCAAGGCTTTGAGAATGGTGCTGCCTGTTCACGGGA
GCATCCAGGCACTCAGAGAGAGATGCCACACTCCTAGTTAGCAATGTTACAATGTTTCTCCCAG
GACGGCAGGTCTGAGAATCCTTCTGCAACAGAACATAGTCCTCTAGAACACAGTGAATTCCTGA
AAATAAAAGACTTGGGGCTTGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCAGTCCC
CAGCTCCGAAAAAAAGAACCCCCCCCAAAAAAAAAGACTTGGGGCTTTAGAGCGGGGTTGTGGG
TAATGACTGAAAGTAAGGCTAAGTCTGAGTGGGTGGAGAACAATGCTAATTTCCAGTGGATGCG
GGTGTCTCTTCTGAGGGCTTCTGGGAGAAAGAACCGCAAAGCACTGGGCCTATCTGTCCAAAGG
CTTGAAGAATCTATGCAGCTGAGACTCACGTTAGGAACCCTTCATCTGTTGTAAATATGTTGTA
CATACATAGGAGGCTGTATATTTTTGCAGGTGTTGATCCACACAGAAATAGAGGTCACTAGTAT
TCCGCATTTTAAAAAAACCCATGTTCTCATAGATGTTAGTGGTTTTGTTTGGGAACTAGAAGAA
TTTTACCTTCTTTCCCATAGTTCTGTCAATGTAAATCTGGAGCCTAAAACCTTAACTGTTTGGA
AAAGAGAAAAATGTCTGGGAAATAACTGCTTTGATTTCTTATGCTGGTATTGCGATCTGTTGTC
TAGATGCTACAGGAAAGATGTTTAGGGGGAAATCATTGTCCTATGGAAACAGGCATGCCCAAAA
GGAGACTTTTCACTACATTATGTCCTTTCACAGTGAACGTTGATGCTACTTCATAGAAGTTGTG
AAAAGAGAACTTAGGGAGGGTTTGGTTTTTGGTTTTTTGTTTTCAAAACTGAAGTTGCTGTTTC
CCAAACTTTGGGATCCGTGAGGTGAGAGCTGAACATTACTAGGAGCGCAGGTTTGAAGGACAGC
ATCTGTGATGTCTAAGCCTTTGAAGGTCGTGCATGTCTGCCTTTTAGCATTGATGCCAACATAG
ATGGTCTTGTCGCCCCCTCCCCCAAACACTTGAATCTTAACCATCGGTACGCAGTGCAGTCTCT
AGAGTCCAGTGTGTCTTCGATCCCCATCTGACTCAGTACATGTAGCACAGCACTATTTTACTAA
TGTAAAAACCTTGTAAATGATTTCAGGTGGGCATCCAAAGTGAATCACAGGTAACTAGACTTAC
CTGTTCACTGTCCATCACATAAAGTTGGGTATTTTTTTTCCTTCGGGGTGTGGTATAAATAAAA
AAAAATGTAAGAAGTTCTGTTCTATAAATGCAGTGTTAACATAGTTTTCAAACATTAAAATGTG
AATTAAAGTA

hide sequence

RefSeq Acc Id:

XM_006242280 ⟹ XP_006242342

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	127,733,230 - 127,802,169 (-)	NCBI
Rnor_6.0	7	137,970,555 - 138,039,731 (-)	NCBI
Rnor_5.0	7	137,598,311 - 137,667,871 (-)	NCBI

Sequence:

show sequence

GAGGGGGTGGAGAAGACGGAGGGGGAGGAGAGCGCGGCCACGCCACTCTGCCTGAAGGTCGCCG
GTAACCCGGCCTTTTACCTTCCTCGGAAACCCGCCACGCGGATCCTCCCCGCCCAGTCTTACAG
ACCAGGGGCCACCTTTCCCTAGGCAGACCTTGACACCAAGAGGACATCTAACTGCCGGGGACGG
CCTGGAAGGGCGGACACTTTGGCGGCGCCTTTCCCTTTATTTCTCGAGGTAAGGGGTCTCGGGC
ATCTCTATTCACTGCTGTCTGCTACTCAAGGTCCTCAGAACAGAAGACATTCGGATTGATTTCT
TGACTACAGACACCCAAATATGATGCATTTCAAAAGTGGCCTCGAGTTAACGGAGCTGCAGAAC
ATGACGGTGCCCGAGGATGACAATGTCAGCAACGACTCTAATGACTTCACGGAAGTGGAGAACG
GCCAGATAAATAGCAAGTTCATCTCTGATCGGGAGAGTAGGAGGAGTCTCACGAACAGCCATCT
GGAGAAAAGGAAATGCGACGAGTATATTCCAGGAACAACCTCTCTGGGAATGTCTGTCTTTAAC
CTGAGCAACGCCATCATGGGCAGTGGGATCTTGGGCCTCGCCTTCGCCTTGGCCAACACGGGGA
TCCTCCTGTTTCTGATACTTCTGACTTCGGTGACGTTACTGTCTATATACTCAATAAACCTACT
ACTGATCTGCTCCAAGGAAACCGGCTGCATGGTCTACGAAAAGCTGGGAGAGCAAGTCTTCGGC
ACCACGGGGAAGCTGGTGATCTTCGGAGCCACCTCTCTGCAGAACACTGGCGCGATGCTGAGCT
ACCTCTTCATAGTGAAAAATGAACTTCCTTCAGCCATAAAATCCCTCATGGGAGAGGAGGAGAC
ATTTTCAGCCTGGTACGTCGATGGCCGAGTGTTGGTGGTGATGGTAACCTTTGGCATAATTCTC
CCGCTGTGTCTCTTGAAGAACCTGGGGTATCTTGGCTACACTAGTGGATTTTCCTTGAGCTGCA
TGGTTTTTTTCCTGATAGTGGTCATCTACAAGAAATTTCAGATTCCTTGCATGAATGGGGAACA
GAACTCAACAGTAAGTGCTAACGTGACTGACGCGTGCACACCAAAGTATGTCACCTTCAACTCA
AAGACGGTGTACGCTTTACCAACCATCGCGTTTGCGTTTGTCTGCCACCCGTCTGTCCTGCCAA
TCTACAGCGAGCTCAAAGATCGGTCACAGAAAAAAATGCAGATGGTTTCCAACATCTCCTTCTT
TGCTATGTTTGTCATGTACTTCCTGACCGCCATCTTTGGGTACCTGACCTTTTATGAAAAGGTG
CAGTCAGACCTCCTTCACAAGTACCAGAGCACAGGCGACATTCTCATCCTGACTGTGCGACTGG
CCGTCATTGTGGCCGTCATCCTCACGGTGCCCGTACTGTTCTTCACAGTCCGGTCCTCGTTGTT
TGAGCTGGCCAAGAAGACGAAGTTCCACCTGTGTCGCCATGTCCTGGTGACCATCATACTCCTT
GTGATTATCAACCTGTTGGTGATCTTCATCCCATCCATGAAGGATATATTTGGAGTCGTAGGGG
TGACGTCTGCTAACATGCTCATTTTCATCCTTCCTTCGTCCCTTTATTTAAAAATCACGAACCA
GGATGGAGACAAGAATACTCAAAGGATTTGGGCGGCCCTTTTCTTGGCCCTGGGGGTGTTGTTC
TCCTTGATCAGCATCCCCCTAGTCATCTACGACTGGGCTTGCTCCTCCAGCAATGGTGAAGGCC
ACTGAAACCAGCAGCGACCAACCCAGCACCTGCTCACACCCATCCAGTCCCCATCAGCAGTCCT
CCTACTCTTCTTTTGCAAGTTTACAGAGACAGAAACGCACAGAGCTCCTCTTGGGTTGCGACAC
AGAGACTCACTCCTAGAAGACTCATGCCCTCTCGGGACCGCCGCTTAGGAACCTTGGATTCCCA
CCTCTCTGGATTTCGTGCAGCCGTCTTGTCCAGCCCTTCCCACAGTTCTCCTTCCCTCTCCTCA
CTGATGTGGCTTCTCTCTCTCAGAACTTCGGAAACATGATCAACAGTCGTCTTCACCTGTTAGA
TACCCAGCTCCTGAAGTCGTTTTCCTACTGACGCTCCGCCCACGCTATCTGGATCTTTTTAGAA
GAGAAAATAATCTTGAATTGTATATATTTATTTTGCTTTACGGAAAAAAAAATTACGGTTTCAG
AGAAAAAAAAGGTTTCATAAATAATTTGCCTATTTTGGTTAACATAGCACACGGGGTTAAATCC
TTTGAGAGACAGGTTGCATGCCCTGGCTGCATCTGAGCGTGCCCAATATTTGAGGCAGCTCTGA
TCACCTGACGGGGACTGTCCTGGGCCTGCTGGTGCTCTGTCCTACTCCCACGGGGAGCGATTCC
CTGGGAGCGTCTGTAGCTGTGAAGGCTTGGGCATGGCGCCTCTGTATATATTAAAATACACATT
CGGGAGATCTCAGGAATGAAACTTTGTTTCCCCTTTGGCGTCTGGAGCATCTGCTACTCTAGGC
TGAGTCACCTGCTTGGGCCCCCTTGGCTCCGTGTCCGAGGATGTATTCCTTAACCAGACTACCT
TCAGCCCACACCCACGTTGTTGAAGGGGGAAACGGTTTGTTGGTTTGTGAGCCCGGCAGCCTTT
AGTCAAGTTCACCAACTTTTCCGCCACAGAGGAGAATGTGTACCTGAGGGTGGCCTAGGATAGG
TCAGCCTGTTTTATACTGGGTACTTTACTTTAATGGAGTCTTTGAAAGACTTGTTTTATATCTA
TAAATCTAGGTTACTACAAATAGAAGATTTTTGTACCTTAAATAAGTCTCATTTCTATTCCCCA
TCAACTCACCATTCAGTCCTGAAAGCAAACCTCCCAGAGAGAGGCTCAGTGGAGAGCCACTGAA
GTCACTGTGTGTCCCCTCCTGCCACAGCTTTGAATGACAGGAGGCCCCTCCCCGTCTGTTTTTT
TATCCCCTTGTATCCCATTACGCCTGTTCTGTGTGACCCAGGCAAGAGGGCAGAGTTGCCTATA
CTCTGTCCCTATCCCTGCCTAAGGGGAGCAGAGGGAAACTTCAAGGAGACTGGAAACTAAGAGT
TTCAGACACGGGCAGCTAGGGAACCTAGAGCAGCAGCCTGCCCTCTGATGGGGATCCCTGTGGC
TACCATAGCTTAGCCACAGCAGGTGAGGTGCACACGAGGTGCACACACGATGATCGTTCTCTGC
AAATGGTCTGCATTGCAGCCAGCTGTGTTCTGGTTGAAATCCTCAGATACAAAAACACACTGAG
CACGGATTTCATACCGGGAGATGAGTAGACGCTAACCGAGTGGCCCGGACACTTAGCTATAGAC
GCCGTTCCTCCTGCCTGAAGTCCTGCAGACAGGGTAGACATGAGAGTGCCTGCCGCTGTGTATC
ATTCTTCTCATAGTGCTTCACTGTTCCGTCCGCCTCCTGTTCAGGCCGCCGACCACAGGGCCCA
GGCAGGAGAAAGGGTAAACCCCACAGCCGTCTCCGCCCTTTGCCCAAACGTTTCCCATGTCACG
GGAAATGACGGAAGGTCCCGCCAACCTCTGTAGCTCTGTTTGCACTGTTTAAAAAGATAAACAT
TAATTCAGTTTGCAAGCTGCATTCCCCTCTTGCTGTCCCCCCCACCCCCTTTTCTGTAACATTT
CAATTTTACATTCGCAAAGTGAATTCAAAAACTCACTAACTCTGGGACGTGTTGTGATTTTCGG
ACCTCTGGATTTTTGTGTTGGTAAAACAAATGTATTCACAGTGTACTTACTGGCAGGAAGCACA
TTGTTGTCGATGTCTGTGATGCGTGGGTTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTTAAAGCTCTTTTGTATGTGTACCTGAGTTTGAATATAAT
GGGTCTTAATGTCATTTTGTCAGATACCACCAAGTAATTCCATAGTTTCCGTGGTCGTCCTGTA
AAGCGGGCTGTTCTTACACTTGTTCAGAATAATGAACCGACAGCCAGAACATACCTGCATCGCA
GACGTCAGGTAGCATTCAGCAGAACAGTCAGACGTAACAGATATTTTTCTGCTAAATTAGTAGA
CTCAAGCCTAGTAGGCCTCCACCGAGGGAAACCGATTTTTCCTTCGGCACATTGCTGGCCAGAG
CCAGTTTCATACTTTGGGTTTAGAACTGTTCTCTGGTTCTTGTAACACAGAATACTGTAGATTC
CTAGATTAGTGTTGCTTTTTAGAAGTAGGGTTCCTAGAGCCTGTGCAGAAGGAAAACCAACTCT
TTCAGGCATGGTCTAGGCCTGATCACAGGGAGAACAGATTTTAAAGCTTTGTCACCTGGAGTGG
ATTTTTCTCCGTTGAGTTCGATGTGGCAGTTAGACCTGCCCAGAGCAGCTGGAAGAGGATGTTG
AGCTGAAATGGAGTAACAGGACCGTGGAAGAGCTAAGTCCCCAGATTGGCAGGAGATGGGGTGT
GTCGGAGTCTCTAGGAATACCCCATTGCCTGTTGCAGAATCTGGACCGTTGTCTCTGCCACAGA
TCACCTGCTGGGCAGTGGGGTCAGGGCTCCACACCAGTGCCCTGAAGCACGGTCTCCTCTAAGA
TAAGAGGGGCTAAGTTCAAAACCCTGAGTGTAGGATGGTGGTCAAAGAAGAGGGGTCCCTAGGG
TTCCCCTCCTTGCCTGCAGTTAACTTCATAGCTTCTCCAGGGTACCAGCTTTGGTGCCAGCACA
CAGCACTCTCAACAGCTCCTGTGCGGGTAGCCATGGGTTCACTGCTTGGTGATCAGATGAACAG
TATGAAGGCTCCCCATCCTTCTTGTACATTTATGGACCCTGCAGAGAGACATAAGACCGTCGGG
GTGGGTTGCAGAGGACTAAGGGCTGTAGCAGGATGCCTCACTGTAACAATTATGCCAAGAATTC
TGGGATTGAAGTCGAGTCCCCAAGCTGGTGTTTCTCAAATTGTACACACACACACACACACACA
CACACACACACACACACACACACACACACACACCATCCCAGGCCAGCAGCAGGAACCTCATCTG
GAGACTTAGCAGCAAATCGTCAGCCCCACCAGACTCAGTGGGTAGAGCAACCTGTCCTCTGCAA
GTCTGAGGTCCAGCCTCCAGGTGAGGCCGGTGACATCAAGCTTGGGAACCACTCAGCCCAGCCT
CAGAAGGTGACTGGTTCTTGGTGTGAGGAATGAGGGCCAGGAAAGGTAGAAAAGGACCCCACCA
GTGTCTGCAGAGCAGGAAAGAGAGAACATCCTGGAAGCCCCTACCTGTGTTCGGTCCTGCTGCC
AATGCAGTGCAGGGGGTGAGTGAAACTTGGGGTGCCTGCACTTTAGGGAACCTAGCCTGAGGCA
CTAGTCTGTTTTCTTACAGCTGTGAAGATTCCAATTGAGGCTTTCAGAAAACATAGGTAAATTT
TAAAAAAAATGCGTTTTGCAAATGCAGCCCTAAAGGGTACTGCTGAGTTTTTTAGGGGACCATG
TCCGTGGTGGGGTGGGGTGCTCTCCTGGTGAAATTCAGTCCCAGCACTGCAAAATAGAAAATAC
TGATACACAGAGTGTTCCGGTGACAGGTCTGCACTGCTGAGGGAGCTGCAAGGGCAGCAGAGCC
TGGTCTGATGCAGGAGCACTGTGTGAGGTGGCATCTTTAACTGGACTAGGGCAGAGGTGGGAGG
TGTGAGCATCTGTGTGGTTTCTACTTTACAGCAAAGCCTCCATCCGGTTAGAACTAGAACGGGG
CAAGGCTTTGAGAATGGTGCTGCCTGTTCACGGGAGCATCCAGGCACTCAGAGAGAGATGCCAC
ACTCCTAGTTAGCAATGTTACAATGTTTCTCCCAGGACGGCAGGTCTGAGAATCCTTCTGCAAC
AGAACATAGTCCTCTAGAACACAGTGAATTCCTGAAAATAAAAGACTTGGGGCTTGTAGAGCGC
TTACCTAGGAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAGAACCCCCCCCAAA
AAAAAAGACTTGGGGCTTTAGAGCGGGGTTGTGGGTAATGACTGAAAGTAAGGCTAAGTCTGAG
TGGGTGGAGAACAATGCTAATTTCCAGTGGATGCGGGTGTCTCTTCTGAGGGCTTCTGGGAGAA
AGAACCGCAAAGCACTGGGCCTATCTGTCCAAAGGCTTGAAGAATCTATGCAGCTGAGACTCAC
GTTAGGAACCCTTCATCTGTTGTAAATATGTTGTACATACATAGGAGGCTGTATATTTTTGCAG
GTGTTGATCCACACAGAAATAGAGGTCACTAGTATTCCGCATTTTAAAAAAACCCATGTTCTCA
TAGATGTTAGTGGTTTTGTTTGGGAACTAGAAGAATTTTACCTTCTTTCCCATAGTTCTGTCAA
TGTAAATCTGGAGCCTAAAACCTTAACTGTTTGGAAAAGAGAAAAATGTCTGGGAAATAACTGC
TTTGATTTCTTATGCTGGTATTGCGATCTGTTGTCTAGATGCTACAGGAAAGATGTTTAGGGGG
AAATCATTGTCCTATGGAAACAGGCATGCCCAAAAGGAGACTTTTCACTACATTATGTCCTTTC
ACAGTGAACGTTGATGCTACTTCATAGAAGTTGTGAAAAGAGAACTTAGGGAGGGTTTGGTTTT
TGGTTTTTTGTTTTCAAAACTGAAGTTGCTGTTTCCCAAACTTTGGGATCCGTGAGGTGAGAGC
TGAACATTACTAGGAGCGCAGGTTTGAAGGACAGCATCTGTGATGTCTAAGCCTTTGAAGGTCG
TGCATGTCTGCCTTTTAGCATTGATGCCAACATAGATGGTCTTGTCGCCCCCTCCCCCAAACAC
TTGAATCTTAACCATCGGTACGCAGTGCAGTCTCTAGAGTCCAGTGTGTCTTCGATCCCCATCT
GACTCAGTACATGTAGCACAGCACTATTTTACTAATGTAAAAACCTTGTAAATGATTTCAGGTG
GGCATCCAAAGTGAATCACAGGTAACTAGACTTACCTGTTCACTGTCCATCACATAAAGTTGGG
TATTTTTTTTCCTTCGGGGTGTGGTATAAATAAAAAAAAATGTAAGAAGTTCTGTTCTATAAAT
GCAGTGTTAACATAGTTTTCAAACATTAAAATGTGAATTAAAGTA

hide sequence

RefSeq Acc Id:

XM_006242281 ⟹ XP_006242343

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	127,733,230 - 127,802,541 (-)	NCBI
Rnor_6.0	7	137,970,555 - 138,040,098 (-)	NCBI
Rnor_5.0	7	137,598,311 - 137,667,871 (-)	NCBI

Sequence:

show sequence

AGCCGCTCGCACTGCCCTTCCTGGATGCTCGGTGTCAGGCAGCCGCGGTCTCCGTGCGGTCCGG
CAGCCCCGGTGGGAGAGGGGCAAGAAGGCGCGGCGATCAGCGGCATGTGACCCGCACCGCTCCG
CCGCACGCAGCTCGGCTCGGCGGGCGCGCGGGCAGGGAGGGACGATGGTCTGAAAGGCCGCTCT
CCCGTCCCCAAACTGCAGAAGAGAAAGGGCGACGCGCCCGGCGGTAGCCAATGAATCAGGCTGG
AGCCCCTCCGCGCCGGGCGTGTGGATGGGTCTCGGGCATCTCTATTCACTGCTGTCTGCTACTC
AAGGTCCTCAGAACAGAAGACATTCGGATTGATTTCTTGACTACAGACACCCAAATATGATGCA
TTTCAAAAGTGGCCTCGAGTTAACGGAGCTGCAGAACATGACGGTGCCCGAGGATGACAATGTC
AGCAACGACTCTAATGACTTCACGGAAGTGGAGAACGGCCAGATAAATAGCAAGTTCATCTCTG
ATCGGGAGAGTAGGAGGAGTCTCACGAACAGCCATCTGGAGAAAAGGAAATGCGACGAGTATAT
TCCAGGAACAACCTCTCTGGGAATGTCTGTCTTTAACCTGAGCAACGCCATCATGGGCAGTGGG
ATCTTGGGCCTCGCCTTCGCCTTGGCCAACACGGGGATCCTCCTGTTTCTGATACTTCTGACTT
CGGTGACGTTACTGTCTATATACTCAATAAACCTACTACTGATCTGCTCCAAGGAAACCGGCTG
CATGGTCTACGAAAAGCTGGGAGAGCAAGTCTTCGGCACCACGGGGAAGCTGGTGATCTTCGGA
GCCACCTCTCTGCAGAACACTGGCGCGATGCTGAGCTACCTCTTCATAGTGAAAAATGAACTTC
CTTCAGCCATAAAATCCCTCATGGGAGAGGAGGAGACATTTTCAGCCTGGTACGTCGATGGCCG
AGTGTTGGTGGTGATGGTAACCTTTGGCATAATTCTCCCGCTGTGTCTCTTGAAGAACCTGGGG
TATCTTGGCTACACTAGTGGATTTTCCTTGAGCTGCATGGTTTTTTTCCTGATAGTGGTCATCT
ACAAGAAATTTCAGATTCCTTGCATGAATGGGGAACAGAACTCAACAGTAAGTGCTAACGTGAC
TGACGCGTGCACACCAAAGTATGTCACCTTCAACTCAAAGACGGTGTACGCTTTACCAACCATC
GCGTTTGCGTTTGTCTGCCACCCGTCTGTCCTGCCAATCTACAGCGAGCTCAAAGATCGGTCAC
AGAAAAAAATGCAGATGGTTTCCAACATCTCCTTCTTTGCTATGTTTGTCATGTACTTCCTGAC
CGCCATCTTTGGGTACCTGACCTTTTATGAAAAGGTGCAGTCAGACCTCCTTCACAAGTACCAG
AGCACAGGCGACATTCTCATCCTGACTGTGCGACTGGCCGTCATTGTGGCCGTCATCCTCACGG
TGCCCGTACTGTTCTTCACAGTCCGGTCCTCGTTGTTTGAGCTGGCCAAGAAGACGAAGTTCCA
CCTGTGTCGCCATGTCCTGGTGACCATCATACTCCTTGTGATTATCAACCTGTTGGTGATCTTC
ATCCCATCCATGAAGGATATATTTGGAGTCGTAGGGGTGACGTCTGCTAACATGCTCATTTTCA
TCCTTCCTTCGTCCCTTTATTTAAAAATCACGAACCAGGATGGAGACAAGAATACTCAAAGGAT
TTGGGCGGCCCTTTTCTTGGCCCTGGGGGTGTTGTTCTCCTTGATCAGCATCCCCCTAGTCATC
TACGACTGGGCTTGCTCCTCCAGCAATGGTGAAGGCCACTGAAACCAGCAGCGACCAACCCAGC
ACCTGCTCACACCCATCCAGTCCCCATCAGCAGTCCTCCTACTCTTCTTTTGCAAGTTTACAGA
GACAGAAACGCACAGAGCTCCTCTTGGGTTGCGACACAGAGACTCACTCCTAGAAGACTCATGC
CCTCTCGGGACCGCCGCTTAGGAACCTTGGATTCCCACCTCTCTGGATTTCGTGCAGCCGTCTT
GTCCAGCCCTTCCCACAGTTCTCCTTCCCTCTCCTCACTGATGTGGCTTCTCTCTCTCAGAACT
TCGGAAACATGATCAACAGTCGTCTTCACCTGTTAGATACCCAGCTCCTGAAGTCGTTTTCCTA
CTGACGCTCCGCCCACGCTATCTGGATCTTTTTAGAAGAGAAAATAATCTTGAATTGTATATAT
TTATTTTGCTTTACGGAAAAAAAAATTACGGTTTCAGAGAAAAAAAAGGTTTCATAAATAATTT
GCCTATTTTGGTTAACATAGCACACGGGGTTAAATCCTTTGAGAGACAGGTTGCATGCCCTGGC
TGCATCTGAGCGTGCCCAATATTTGAGGCAGCTCTGATCACCTGACGGGGACTGTCCTGGGCCT
GCTGGTGCTCTGTCCTACTCCCACGGGGAGCGATTCCCTGGGAGCGTCTGTAGCTGTGAAGGCT
TGGGCATGGCGCCTCTGTATATATTAAAATACACATTCGGGAGATCTCAGGAATGAAACTTTGT
TTCCCCTTTGGCGTCTGGAGCATCTGCTACTCTAGGCTGAGTCACCTGCTTGGGCCCCCTTGGC
TCCGTGTCCGAGGATGTATTCCTTAACCAGACTACCTTCAGCCCACACCCACGTTGTTGAAGGG
GGAAACGGTTTGTTGGTTTGTGAGCCCGGCAGCCTTTAGTCAAGTTCACCAACTTTTCCGCCAC
AGAGGAGAATGTGTACCTGAGGGTGGCCTAGGATAGGTCAGCCTGTTTTATACTGGGTACTTTA
CTTTAATGGAGTCTTTGAAAGACTTGTTTTATATCTATAAATCTAGGTTACTACAAATAGAAGA
TTTTTGTACCTTAAATAAGTCTCATTTCTATTCCCCATCAACTCACCATTCAGTCCTGAAAGCA
AACCTCCCAGAGAGAGGCTCAGTGGAGAGCCACTGAAGTCACTGTGTGTCCCCTCCTGCCACAG
CTTTGAATGACAGGAGGCCCCTCCCCGTCTGTTTTTTTATCCCCTTGTATCCCATTACGCCTGT
TCTGTGTGACCCAGGCAAGAGGGCAGAGTTGCCTATACTCTGTCCCTATCCCTGCCTAAGGGGA
GCAGAGGGAAACTTCAAGGAGACTGGAAACTAAGAGTTTCAGACACGGGCAGCTAGGGAACCTA
GAGCAGCAGCCTGCCCTCTGATGGGGATCCCTGTGGCTACCATAGCTTAGCCACAGCAGGTGAG
GTGCACACGAGGTGCACACACGATGATCGTTCTCTGCAAATGGTCTGCATTGCAGCCAGCTGTG
TTCTGGTTGAAATCCTCAGATACAAAAACACACTGAGCACGGATTTCATACCGGGAGATGAGTA
GACGCTAACCGAGTGGCCCGGACACTTAGCTATAGACGCCGTTCCTCCTGCCTGAAGTCCTGCA
GACAGGGTAGACATGAGAGTGCCTGCCGCTGTGTATCATTCTTCTCATAGTGCTTCACTGTTCC
GTCCGCCTCCTGTTCAGGCCGCCGACCACAGGGCCCAGGCAGGAGAAAGGGTAAACCCCACAGC
CGTCTCCGCCCTTTGCCCAAACGTTTCCCATGTCACGGGAAATGACGGAAGGTCCCGCCAACCT
CTGTAGCTCTGTTTGCACTGTTTAAAAAGATAAACATTAATTCAGTTTGCAAGCTGCATTCCCC
TCTTGCTGTCCCCCCCACCCCCTTTTCTGTAACATTTCAATTTTACATTCGCAAAGTGAATTCA
AAAACTCACTAACTCTGGGACGTGTTGTGATTTTCGGACCTCTGGATTTTTGTGTTGGTAAAAC
AAATGTATTCACAGTGTACTTACTGGCAGGAAGCACATTGTTGTCGATGTCTGTGATGCGTGGG
TTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTA
AAGCTCTTTTGTATGTGTACCTGAGTTTGAATATAATGGGTCTTAATGTCATTTTGTCAGATAC
CACCAAGTAATTCCATAGTTTCCGTGGTCGTCCTGTAAAGCGGGCTGTTCTTACACTTGTTCAG
AATAATGAACCGACAGCCAGAACATACCTGCATCGCAGACGTCAGGTAGCATTCAGCAGAACAG
TCAGACGTAACAGATATTTTTCTGCTAAATTAGTAGACTCAAGCCTAGTAGGCCTCCACCGAGG
GAAACCGATTTTTCCTTCGGCACATTGCTGGCCAGAGCCAGTTTCATACTTTGGGTTTAGAACT
GTTCTCTGGTTCTTGTAACACAGAATACTGTAGATTCCTAGATTAGTGTTGCTTTTTAGAAGTA
GGGTTCCTAGAGCCTGTGCAGAAGGAAAACCAACTCTTTCAGGCATGGTCTAGGCCTGATCACA
GGGAGAACAGATTTTAAAGCTTTGTCACCTGGAGTGGATTTTTCTCCGTTGAGTTCGATGTGGC
AGTTAGACCTGCCCAGAGCAGCTGGAAGAGGATGTTGAGCTGAAATGGAGTAACAGGACCGTGG
AAGAGCTAAGTCCCCAGATTGGCAGGAGATGGGGTGTGTCGGAGTCTCTAGGAATACCCCATTG
CCTGTTGCAGAATCTGGACCGTTGTCTCTGCCACAGATCACCTGCTGGGCAGTGGGGTCAGGGC
TCCACACCAGTGCCCTGAAGCACGGTCTCCTCTAAGATAAGAGGGGCTAAGTTCAAAACCCTGA
GTGTAGGATGGTGGTCAAAGAAGAGGGGTCCCTAGGGTTCCCCTCCTTGCCTGCAGTTAACTTC
ATAGCTTCTCCAGGGTACCAGCTTTGGTGCCAGCACACAGCACTCTCAACAGCTCCTGTGCGGG
TAGCCATGGGTTCACTGCTTGGTGATCAGATGAACAGTATGAAGGCTCCCCATCCTTCTTGTAC
ATTTATGGACCCTGCAGAGAGACATAAGACCGTCGGGGTGGGTTGCAGAGGACTAAGGGCTGTA
GCAGGATGCCTCACTGTAACAATTATGCCAAGAATTCTGGGATTGAAGTCGAGTCCCCAAGCTG
GTGTTTCTCAAATTGTACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACCATCCCAGGCCAGCAGCAGGAACCTCATCTGGAGACTTAGCAGCAAATCGTCAGCCCC
ACCAGACTCAGTGGGTAGAGCAACCTGTCCTCTGCAAGTCTGAGGTCCAGCCTCCAGGTGAGGC
CGGTGACATCAAGCTTGGGAACCACTCAGCCCAGCCTCAGAAGGTGACTGGTTCTTGGTGTGAG
GAATGAGGGCCAGGAAAGGTAGAAAAGGACCCCACCAGTGTCTGCAGAGCAGGAAAGAGAGAAC
ATCCTGGAAGCCCCTACCTGTGTTCGGTCCTGCTGCCAATGCAGTGCAGGGGGTGAGTGAAACT
TGGGGTGCCTGCACTTTAGGGAACCTAGCCTGAGGCACTAGTCTGTTTTCTTACAGCTGTGAAG
ATTCCAATTGAGGCTTTCAGAAAACATAGGTAAATTTTAAAAAAAATGCGTTTTGCAAATGCAG
CCCTAAAGGGTACTGCTGAGTTTTTTAGGGGACCATGTCCGTGGTGGGGTGGGGTGCTCTCCTG
GTGAAATTCAGTCCCAGCACTGCAAAATAGAAAATACTGATACACAGAGTGTTCCGGTGACAGG
TCTGCACTGCTGAGGGAGCTGCAAGGGCAGCAGAGCCTGGTCTGATGCAGGAGCACTGTGTGAG
GTGGCATCTTTAACTGGACTAGGGCAGAGGTGGGAGGTGTGAGCATCTGTGTGGTTTCTACTTT
ACAGCAAAGCCTCCATCCGGTTAGAACTAGAACGGGGCAAGGCTTTGAGAATGGTGCTGCCTGT
TCACGGGAGCATCCAGGCACTCAGAGAGAGATGCCACACTCCTAGTTAGCAATGTTACAATGTT
TCTCCCAGGACGGCAGGTCTGAGAATCCTTCTGCAACAGAACATAGTCCTCTAGAACACAGTGA
ATTCCTGAAAATAAAAGACTTGGGGCTTGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGT
TCAGTCCCCAGCTCCGAAAAAAAGAACCCCCCCCAAAAAAAAAGACTTGGGGCTTTAGAGCGGG
GTTGTGGGTAATGACTGAAAGTAAGGCTAAGTCTGAGTGGGTGGAGAACAATGCTAATTTCCAG
TGGATGCGGGTGTCTCTTCTGAGGGCTTCTGGGAGAAAGAACCGCAAAGCACTGGGCCTATCTG
TCCAAAGGCTTGAAGAATCTATGCAGCTGAGACTCACGTTAGGAACCCTTCATCTGTTGTAAAT
ATGTTGTACATACATAGGAGGCTGTATATTTTTGCAGGTGTTGATCCACACAGAAATAGAGGTC
ACTAGTATTCCGCATTTTAAAAAAACCCATGTTCTCATAGATGTTAGTGGTTTTGTTTGGGAAC
TAGAAGAATTTTACCTTCTTTCCCATAGTTCTGTCAATGTAAATCTGGAGCCTAAAACCTTAAC
TGTTTGGAAAAGAGAAAAATGTCTGGGAAATAACTGCTTTGATTTCTTATGCTGGTATTGCGAT
CTGTTGTCTAGATGCTACAGGAAAGATGTTTAGGGGGAAATCATTGTCCTATGGAAACAGGCAT
GCCCAAAAGGAGACTTTTCACTACATTATGTCCTTTCACAGTGAACGTTGATGCTACTTCATAG
AAGTTGTGAAAAGAGAACTTAGGGAGGGTTTGGTTTTTGGTTTTTTGTTTTCAAAACTGAAGTT
GCTGTTTCCCAAACTTTGGGATCCGTGAGGTGAGAGCTGAACATTACTAGGAGCGCAGGTTTGA
AGGACAGCATCTGTGATGTCTAAGCCTTTGAAGGTCGTGCATGTCTGCCTTTTAGCATTGATGC
CAACATAGATGGTCTTGTCGCCCCCTCCCCCAAACACTTGAATCTTAACCATCGGTACGCAGTG
CAGTCTCTAGAGTCCAGTGTGTCTTCGATCCCCATCTGACTCAGTACATGTAGCACAGCACTAT
TTTACTAATGTAAAAACCTTGTAAATGATTTCAGGTGGGCATCCAAAGTGAATCACAGGTAACT
AGACTTACCTGTTCACTGTCCATCACATAAAGTTGGGTATTTTTTTTCCTTCGGGGTGTGGTAT
AAATAAAAAAAAATGTAAGAAGTTCTGTTCTATAAATGCAGTGTTAACATAGTTTTCAAACATT
AAAATGTGAATTAAAGTA

hide sequence

RefSeq Acc Id:

XM_039078321 ⟹ XP_038934249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	127,733,230 - 127,758,622 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_620187	(Get FASTA)	NCBI Sequence Viewer
	XP_006242339	(Get FASTA)	NCBI Sequence Viewer
	XP_006242342	(Get FASTA)	NCBI Sequence Viewer
	XP_006242343	(Get FASTA)	NCBI Sequence Viewer
	XP_038934249	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF34240	(Get FASTA)	NCBI Sequence Viewer
	AAH97283	(Get FASTA)	NCBI Sequence Viewer
	EDL87118	(Get FASTA)	NCBI Sequence Viewer
	EDL87119	(Get FASTA)	NCBI Sequence Viewer
	Q9JM15	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_620187 ⟸ NM_138832

- UniProtKB:

Q9JM15 (UniProtKB/Swiss-Prot), A6KC24 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMHFKSGLELTELQNMTVPEDDNVSNDSNDFTEVENGQINSKFISDRESRRSLTNSHLEKRKCD
EYIPGTTSLGMSVFNLSNAIMGSGILGLAFALANTGILLFLILLTSVTLLSIYSINLLLICSKE
TGCMVYEKLGEQVFGTTGKLVIFGATSLQNTGAMLSYLFIVKNELPSAIKSLMGEEETFSAWYV
DGRVLVVMVTFGIILPLCLLKNLGYLGYTSGFSLSCMVFFLIVVIYKKFQIPCMNGEQNSTVSA
NVTDACTPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMY
FLTAIFGYLTFYEKVQSDLLHKYQSTGDILILTVRLAVIVAVILTVPVLFFTVRSSLFELAKKT
KFHLCRHVLVTIILLVIINLLVIFIPSMKDIFGVVGVTSANMLIFILPSSLYLKITNQDGDKNT
QRIWAALFLALGVLFSLISIPLVIYDWACSSSNGEGH

hide sequence

RefSeq Acc Id:	XP_006242343 ⟸ XM_006242281
- Peptide Label:	isoform X1
- UniProtKB:	Q9JM15 (UniProtKB/Swiss-Prot), A6KC24 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMHFKSGLELTELQNMTVPEDDNVSNDSNDFTEVENGQINSKFISDRESRRSLTNSHLEKRKCD EYIPGTTSLGMSVFNLSNAIMGSGILGLAFALANTGILLFLILLTSVTLLSIYSINLLLICSKE TGCMVYEKLGEQVFGTTGKLVIFGATSLQNTGAMLSYLFIVKNELPSAIKSLMGEEETFSAWYV DGRVLVVMVTFGIILPLCLLKNLGYLGYTSGFSLSCMVFFLIVVIYKKFQIPCMNGEQNSTVSA NVTDACTPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMY FLTAIFGYLTFYEKVQSDLLHKYQSTGDILILTVRLAVIVAVILTVPVLFFTVRSSLFELAKKT KFHLCRHVLVTIILLVIINLLVIFIPSMKDIFGVVGVTSANMLIFILPSSLYLKITNQDGDKNT QRIWAALFLALGVLFSLISIPLVIYDWACSSSNGEGH hide sequence

RefSeq Acc Id:	XP_006242342 ⟸ XM_006242280
- Peptide Label:	isoform X1
- UniProtKB:	Q9JM15 (UniProtKB/Swiss-Prot), A6KC24 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMHFKSGLELTELQNMTVPEDDNVSNDSNDFTEVENGQINSKFISDRESRRSLTNSHLEKRKCD EYIPGTTSLGMSVFNLSNAIMGSGILGLAFALANTGILLFLILLTSVTLLSIYSINLLLICSKE TGCMVYEKLGEQVFGTTGKLVIFGATSLQNTGAMLSYLFIVKNELPSAIKSLMGEEETFSAWYV DGRVLVVMVTFGIILPLCLLKNLGYLGYTSGFSLSCMVFFLIVVIYKKFQIPCMNGEQNSTVSA NVTDACTPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMY FLTAIFGYLTFYEKVQSDLLHKYQSTGDILILTVRLAVIVAVILTVPVLFFTVRSSLFELAKKT KFHLCRHVLVTIILLVIINLLVIFIPSMKDIFGVVGVTSANMLIFILPSSLYLKITNQDGDKNT QRIWAALFLALGVLFSLISIPLVIYDWACSSSNGEGH hide sequence

RefSeq Acc Id:	XP_006242339 ⟸ XM_006242277
- Peptide Label:	isoform X1
- UniProtKB:	Q9JM15 (UniProtKB/Swiss-Prot), A6KC24 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMHFKSGLELTELQNMTVPEDDNVSNDSNDFTEVENGQINSKFISDRESRRSLTNSHLEKRKCD EYIPGTTSLGMSVFNLSNAIMGSGILGLAFALANTGILLFLILLTSVTLLSIYSINLLLICSKE TGCMVYEKLGEQVFGTTGKLVIFGATSLQNTGAMLSYLFIVKNELPSAIKSLMGEEETFSAWYV DGRVLVVMVTFGIILPLCLLKNLGYLGYTSGFSLSCMVFFLIVVIYKKFQIPCMNGEQNSTVSA NVTDACTPKYVTFNSKTVYALPTIAFAFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMY FLTAIFGYLTFYEKVQSDLLHKYQSTGDILILTVRLAVIVAVILTVPVLFFTVRSSLFELAKKT KFHLCRHVLVTIILLVIINLLVIFIPSMKDIFGVVGVTSANMLIFILPSSLYLKITNQDGDKNT QRIWAALFLALGVLFSLISIPLVIYDWACSSSNGEGH hide sequence

RefSeq Acc Id:

ENSRNOP00000008138 ⟸ ENSRNOT00000008138

RefSeq Acc Id:

ENSRNOP00000070624 ⟸ ENSRNOT00000089806

RefSeq Acc Id:	XP_038934249 ⟸ XM_039078321
- Peptide Label:	isoform X2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JM15-F1-model_v2	AlphaFold	Q9JM15	1-485	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:69645	AgrOrtholog
BioCyc Gene	G2FUF-32246	BioCyc
Ensembl Genes	ENSRNOG00000005291	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000008138	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000008138	ENTREZGENE, UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7444889	IMAGE-MGC_LOAD
InterPro	AA_transpt_TM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:170567	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:114262	IMAGE-MGC_LOAD
NCBI Gene	170567	ENTREZGENE
PANTHER	AMINO ACID TRANSPORTER	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Aa_trans	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc38a1	PhenoGen
TIGR	TC232025
UniProt	A6KC24	ENTREZGENE, UniProtKB/TrEMBL
	Q9JM15	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Slc38a1	solute carrier family 38, member 1			Symbol and Name status set to approved	70586	APPROVED
2002-02-27	Slc38a1	solute carrier family 38, member 1			Symbol and Name updated to reflect Human and Mouse nomenclature	70292	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localizes to somata and proximal dendrites	1299220
gene_function	transports glutamine from glutamatergic neurons	68922
gene_process	supplies glutamatergic neurons with serine and cysteine	68922
gene_process	may have a role in providing metabolic fuel (via alpha-ketoglutarate) or precursors for glutathione synthesis	1299220

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)