SLC38A1 (solute carrier family 38 member 1) - Rat Genome Database

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Gene: SLC38A1 (solute carrier family 38 member 1) Canis lupus familiaris
Analyze
Symbol: SLC38A1
Name: solute carrier family 38 member 1
RGD ID: 12231506
Description: ENCODES a protein that exhibits alanine:sodium symporter activity (ortholog); amino acid:sodium symporter activity (ortholog); glycine:sodium symporter activity (ortholog); INVOLVED IN amino acid import (ortholog); female pregnancy (ortholog); glutamine metabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatocellular carcinoma (ortholog); visual epilepsy (ortholog); FOUND IN external side of apical plasma membrane (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium-coupled neutral amino acid transporter 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,110,327 - 8,179,394 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,130,823 - 8,174,936 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2738,127,750 - 38,197,361 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0278,309,904 - 8,379,147 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl278,309,945 - 8,379,526 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,117,874 - 8,187,129 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0278,156,867 - 8,221,929 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02738,367,553 - 38,436,859 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC38A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,110,327 - 8,179,394 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,130,823 - 8,174,936 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2738,127,750 - 38,197,361 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0278,309,904 - 8,379,147 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl278,309,945 - 8,379,526 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1278,117,874 - 8,187,129 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0278,156,867 - 8,221,929 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02738,367,553 - 38,436,859 (-)NCBIUU_Cfam_GSD_1.0
SLC38A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381246,183,063 - 46,269,043 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1246,183,063 - 46,270,017 (-)EnsemblGRCh38hg38GRCh38
GRCh371246,576,846 - 46,662,826 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361244,863,105 - 44,949,475 (-)NCBINCBI36Build 36hg18NCBI36
Build 341244,867,850 - 44,948,816NCBI
Celera1245,374,176 - 45,460,544 (-)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1243,608,096 - 43,694,464 (-)NCBIHuRef
CHM1_11246,541,943 - 46,628,310 (-)NCBICHM1_1
T2T-CHM13v2.01246,142,659 - 46,228,603 (-)NCBIT2T-CHM13v2.0
Slc38a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391596,469,299 - 96,541,396 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1596,469,299 - 96,540,794 (-)EnsemblGRCm39 Ensembl
GRCm381596,571,418 - 96,643,438 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1596,571,418 - 96,642,913 (-)EnsemblGRCm38mm10GRCm38
MGSCv371596,401,849 - 96,473,344 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361596,402,709 - 96,452,131 (-)NCBIMGSCv36mm8
Celera1598,716,978 - 98,788,897 (-)NCBICelera
Cytogenetic Map15F1NCBI
Slc38a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87129,612,414 - 129,681,727 (-)NCBIGRCr8
mRatBN7.27127,733,230 - 127,802,541 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7127,738,226 - 127,802,218 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7129,539,154 - 129,603,112 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07131,764,672 - 131,828,633 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07131,682,822 - 131,746,754 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07137,970,555 - 138,040,098 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7137,975,549 - 138,039,984 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07137,598,311 - 137,667,871 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47135,252,257 - 135,316,256 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17135,328,704 - 135,392,693 (-)NCBI
Celera7124,242,806 - 124,306,590 (-)NCBICelera
Cytogenetic Map7q35NCBI
Slc38a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555005,398,358 - 5,462,042 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555005,393,211 - 5,468,827 (-)NCBIChiLan1.0ChiLan1.0
SLC38A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21047,895,936 - 47,984,817 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11247,895,548 - 47,981,585 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01242,464,360 - 42,550,324 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11243,333,087 - 43,419,502 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1243,362,597 - 43,413,616 (+)Ensemblpanpan1.1panPan2
Slc38a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494568,660,514 - 68,726,003 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365124,444,684 - 4,487,165 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365124,438,827 - 4,504,416 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl577,009,862 - 77,058,427 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1577,009,840 - 77,076,723 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2579,935,364 - 80,001,646 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11142,415,986 - 42,502,794 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1142,421,910 - 42,472,838 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037203,924,850 - 204,006,548 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc38a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248165,989,601 - 6,025,987 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248165,988,625 - 6,025,987 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC38A1
852 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 1 6 3 6 12 1
Low 1 4 13 3 3 3 5 8 9 6
Below cutoff 3 3 3 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005636946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005636947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022411529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038460017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_534827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002620390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005302960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005315558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005346069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005380075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005413591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000039343   ⟹   ENSCAFP00000035181
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl278,130,823 - 8,174,936 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000079846   ⟹   ENSCAFP00000062821
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl278,130,823 - 8,174,593 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845048572   ⟹   ENSCAFP00845038103
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl278,309,945 - 8,374,198 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845048677   ⟹   ENSCAFP00845038185
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl278,310,816 - 8,379,526 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845048779   ⟹   ENSCAFP00845038273
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl278,330,520 - 8,372,843 (+)Ensembl
RefSeq Acc Id: XM_005636946   ⟹   XP_005637003
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1278,110,327 - 8,175,932 (+)NCBI
Dog10K_Boxer_Tasha2738,127,750 - 38,197,361 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005636947   ⟹   XP_005637004
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1278,111,528 - 8,179,394 (+)NCBI
Dog10K_Boxer_Tasha2738,127,750 - 38,196,120 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022411529   ⟹   XP_022267237
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1278,110,327 - 8,175,932 (+)NCBI
Dog10K_Boxer_Tasha2738,127,750 - 38,197,361 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038438399   ⟹   XP_038294327
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0278,310,731 - 8,379,147 (+)NCBI
RefSeq Acc Id: XM_038438400   ⟹   XP_038294328
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0278,309,904 - 8,379,147 (+)NCBI
RefSeq Acc Id: XM_038438401   ⟹   XP_038294329
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0278,311,141 - 8,379,147 (+)NCBI
RefSeq Acc Id: XM_038438402   ⟹   XP_038294330
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0278,312,560 - 8,379,147 (+)NCBI
RefSeq Acc Id: XM_038438403   ⟹   XP_038294331
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0278,310,731 - 8,379,147 (+)NCBI
RefSeq Acc Id: XM_038438405   ⟹   XP_038294333
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0278,309,904 - 8,379,147 (+)NCBI
RefSeq Acc Id: XM_038438406   ⟹   XP_038294334
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0278,311,141 - 8,379,147 (+)NCBI
RefSeq Acc Id: XM_038438407   ⟹   XP_038294335
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0278,312,559 - 8,379,147 (+)NCBI
RefSeq Acc Id: XM_038460014   ⟹   XP_038315942
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2738,127,750 - 38,196,530 (-)NCBI
RefSeq Acc Id: XM_038460015   ⟹   XP_038315943
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2738,127,750 - 38,194,692 (-)NCBI
RefSeq Acc Id: XM_038460016   ⟹   XP_038315944
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2738,127,750 - 38,196,530 (-)NCBI
RefSeq Acc Id: XM_038460017   ⟹   XP_038315945
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2738,127,750 - 38,194,693 (-)NCBI
RefSeq Acc Id: XM_038513095   ⟹   XP_038369023
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,118,703 - 8,187,129 (+)NCBI
RefSeq Acc Id: XM_038513096   ⟹   XP_038369024
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,117,874 - 8,187,129 (+)NCBI
RefSeq Acc Id: XM_038513097   ⟹   XP_038369025
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,119,113 - 8,187,129 (+)NCBI
RefSeq Acc Id: XM_038513098   ⟹   XP_038369026
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,120,528 - 8,187,129 (+)NCBI
RefSeq Acc Id: XM_038513099   ⟹   XP_038369027
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,118,703 - 8,187,129 (+)NCBI
RefSeq Acc Id: XM_038513100   ⟹   XP_038369028
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,117,874 - 8,187,129 (+)NCBI
RefSeq Acc Id: XM_038513101   ⟹   XP_038369029
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,119,113 - 8,187,129 (+)NCBI
RefSeq Acc Id: XM_038513102   ⟹   XP_038369030
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,120,527 - 8,187,129 (+)NCBI
RefSeq Acc Id: XM_038577427   ⟹   XP_038433355
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02738,367,553 - 38,436,029 (-)NCBI
RefSeq Acc Id: XM_038577428   ⟹   XP_038433356
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02738,367,553 - 38,436,859 (-)NCBI
RefSeq Acc Id: XM_038577429   ⟹   XP_038433357
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02738,367,553 - 38,435,617 (-)NCBI
RefSeq Acc Id: XM_038577430   ⟹   XP_038433358
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02738,367,553 - 38,434,195 (-)NCBI
RefSeq Acc Id: XM_038577431   ⟹   XP_038433359
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02738,367,553 - 38,436,029 (-)NCBI
RefSeq Acc Id: XM_038577432   ⟹   XP_038433360
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02738,367,553 - 38,436,859 (-)NCBI
RefSeq Acc Id: XM_038577434   ⟹   XP_038433362
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02738,367,553 - 38,435,617 (-)NCBI
RefSeq Acc Id: XM_038577435   ⟹   XP_038433363
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02738,367,553 - 38,434,196 (-)NCBI
RefSeq Acc Id: XM_038640866   ⟹   XP_038496794
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0278,157,702 - 8,221,929 (+)NCBI
RefSeq Acc Id: XM_038640867   ⟹   XP_038496795
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0278,156,867 - 8,221,929 (+)NCBI
RefSeq Acc Id: XM_038640868   ⟹   XP_038496796
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0278,158,112 - 8,221,929 (+)NCBI
RefSeq Acc Id: XM_038640869   ⟹   XP_038496797
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0278,159,529 - 8,221,929 (+)NCBI
RefSeq Acc Id: XM_038640870   ⟹   XP_038496798
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0278,157,702 - 8,221,929 (+)NCBI
RefSeq Acc Id: XM_038640871   ⟹   XP_038496799
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0278,156,867 - 8,221,929 (+)NCBI
RefSeq Acc Id: XM_038640872   ⟹   XP_038496800
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0278,158,112 - 8,221,929 (+)NCBI
RefSeq Acc Id: XM_038640873   ⟹   XP_038496801
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0278,159,528 - 8,221,929 (+)NCBI
RefSeq Acc Id: XM_534827   ⟹   XP_534827
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1278,111,528 - 8,179,394 (+)NCBI
Dog10K_Boxer_Tasha2738,127,750 - 38,196,120 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005302960
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0278,310,731 - 8,379,147 (+)NCBI
RefSeq Acc Id: XR_005315558
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2738,127,750 - 38,196,530 (-)NCBI
RefSeq Acc Id: XR_005346069
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1278,118,703 - 8,187,129 (+)NCBI
RefSeq Acc Id: XR_005380075
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02738,367,553 - 38,436,029 (-)NCBI
RefSeq Acc Id: XR_005413591
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0278,157,702 - 8,221,929 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005637003 (Get FASTA)   NCBI Sequence Viewer  
  XP_005637004 (Get FASTA)   NCBI Sequence Viewer  
  XP_022267237 (Get FASTA)   NCBI Sequence Viewer  
  XP_038294327 (Get FASTA)   NCBI Sequence Viewer  
  XP_038294328 (Get FASTA)   NCBI Sequence Viewer  
  XP_038294329 (Get FASTA)   NCBI Sequence Viewer  
  XP_038294330 (Get FASTA)   NCBI Sequence Viewer  
  XP_038294331 (Get FASTA)   NCBI Sequence Viewer  
  XP_038294333 (Get FASTA)   NCBI Sequence Viewer  
  XP_038294334 (Get FASTA)   NCBI Sequence Viewer  
  XP_038294335 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315942 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315943 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315944 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315945 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369023 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369024 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369025 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369026 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369027 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369028 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369029 (Get FASTA)   NCBI Sequence Viewer  
  XP_038369030 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433355 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433356 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433357 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433358 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433359 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433360 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433362 (Get FASTA)   NCBI Sequence Viewer  
  XP_038433363 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496794 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496795 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496796 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496797 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496798 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496799 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496800 (Get FASTA)   NCBI Sequence Viewer  
  XP_038496801 (Get FASTA)   NCBI Sequence Viewer  
  XP_534827 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000035181.3
  ENSCAFP00000062821.2
  ENSCAFP00030041006.1
  ENSCAFP00030041030.1
  ENSCAFP00040032981.1
  ENSCAFP00040033041.1
  ENSCAFP00040033148.1
  ENSCAFP00845038103
  ENSCAFP00845038103.1
  ENSCAFP00845038185.1
  ENSCAFP00845038273
  ENSCAFP00845038273.1
RefSeq Acc Id: XP_005637003   ⟸   XM_005636946
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005637004   ⟸   XM_005636947
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_534827   ⟸   XM_534827
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022267237   ⟸   XM_022411529
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000035181   ⟸   ENSCAFT00000039343
RefSeq Acc Id: ENSCAFP00000062821   ⟸   ENSCAFT00000079846
RefSeq Acc Id: XP_038369028   ⟸   XM_038513100
RefSeq Acc Id: XP_038369024   ⟸   XM_038513096
RefSeq Acc Id: XP_038369027   ⟸   XM_038513099
RefSeq Acc Id: XP_038369023   ⟸   XM_038513095
RefSeq Acc Id: XP_038369029   ⟸   XM_038513101
RefSeq Acc Id: XP_038369025   ⟸   XM_038513097
RefSeq Acc Id: XP_038369030   ⟸   XM_038513102
RefSeq Acc Id: XP_038369026   ⟸   XM_038513098
RefSeq Acc Id: XP_038496799   ⟸   XM_038640871
RefSeq Acc Id: XP_038496795   ⟸   XM_038640867
RefSeq Acc Id: XP_038496798   ⟸   XM_038640870
RefSeq Acc Id: XP_038496794   ⟸   XM_038640866
RefSeq Acc Id: XP_038496800   ⟸   XM_038640872
RefSeq Acc Id: XP_038496796   ⟸   XM_038640868
RefSeq Acc Id: XP_038496801   ⟸   XM_038640873
RefSeq Acc Id: XP_038496797   ⟸   XM_038640869
RefSeq Acc Id: XP_038294333   ⟸   XM_038438405
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294328   ⟸   XM_038438400
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294331   ⟸   XM_038438403
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294327   ⟸   XM_038438399
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294334   ⟸   XM_038438406
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294329   ⟸   XM_038438401
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294335   ⟸   XM_038438407
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294330   ⟸   XM_038438402
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315942   ⟸   XM_038460014
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315944   ⟸   XM_038460016
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315945   ⟸   XM_038460017
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038315943   ⟸   XM_038460015
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433356   ⟸   XM_038577428
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433360   ⟸   XM_038577432
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433355   ⟸   XM_038577427
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433359   ⟸   XM_038577431
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433357   ⟸   XM_038577429
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433362   ⟸   XM_038577434
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433363   ⟸   XM_038577435
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433358   ⟸   XM_038577430
- UniProtKB: A0A8C0QZ37 (UniProtKB/TrEMBL),   A0A8C0RTG7 (UniProtKB/TrEMBL),   A0A8C0T7T2 (UniProtKB/TrEMBL),   A0A8I3SAV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845038185   ⟸   ENSCAFT00845048677
RefSeq Acc Id: ENSCAFP00845038273   ⟸   ENSCAFT00845048779
RefSeq Acc Id: ENSCAFP00845038103   ⟸   ENSCAFT00845048572
Promoters
RGD ID:13688129
Promoter ID:EPDNEW_C6196
Type:initiation region
Name:SLC38A1_1
Description:solute carrier family 38 member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1278,111,471 - 8,111,531EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009286 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025322 UniProtKB/TrEMBL
  ENSCAFG00040020254 UniProtKB/TrEMBL
  ENSCAFG00845027508 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000039343.4 UniProtKB/TrEMBL
  ENSCAFT00000079846.2 UniProtKB/TrEMBL
  ENSCAFT00030046913.1 UniProtKB/TrEMBL
  ENSCAFT00030046937.1 UniProtKB/TrEMBL
  ENSCAFT00040037837.1 UniProtKB/TrEMBL
  ENSCAFT00040037906.1 UniProtKB/TrEMBL
  ENSCAFT00040038026.1 UniProtKB/TrEMBL
  ENSCAFT00845048572 ENTREZGENE
  ENSCAFT00845048572.1 UniProtKB/TrEMBL
  ENSCAFT00845048677 ENTREZGENE
  ENSCAFT00845048677.1 UniProtKB/TrEMBL
  ENSCAFT00845048779 ENTREZGENE
  ENSCAFT00845048779.1 UniProtKB/TrEMBL
InterPro AA_transpt_TM UniProtKB/TrEMBL
KEGG Report cfa:477633 UniProtKB/TrEMBL
NCBI Gene SLC38A1 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/TrEMBL
  SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 1 UniProtKB/TrEMBL
Pfam Aa_trans UniProtKB/TrEMBL
UniProt A0A8C0QZ37 ENTREZGENE
  A0A8C0RTG7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RTH1_CANLF UniProtKB/TrEMBL
  A0A8C0T7T2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T7X9_CANLF UniProtKB/TrEMBL
  A0A8I3Q1J7_CANLF UniProtKB/TrEMBL
  A0A8I3S6E4_CANLF UniProtKB/TrEMBL
  A0A8I3SAV9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:46390 ENTREZGENE