LOC102553726 (keratin, type II cytoskeletal 6A-like) - Rat Genome Database

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Gene: LOC102553726 (keratin, type II cytoskeletal 6A-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC102553726
Name: keratin, type II cytoskeletal 6A-like
RGD ID: 7641984
Description: Predicted to be located in keratin filament.
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,665,968 - 134,670,412 (-)NCBIGRCr8
mRatBN7.27132,787,470 - 132,791,649 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,787,265 - 132,791,703 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0142,980,693 - 42,981,307 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0144,313,630 - 44,314,418 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in LOC102553726
75 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000104622   ⟹   ENSRNOP00000096241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7132,787,265 - 132,791,703 (-)Ensembl
RefSeq Acc Id: XM_039080628   ⟹   XP_038936556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87134,665,968 - 134,670,412 (-)NCBI
mRatBN7.27132,787,470 - 132,791,649 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038936556 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000096241
  ENSRNOP00000096241.1
Reference Protein Sequences
RefSeq Acc Id: XP_038936556   ⟸   XM_039080628
- UniProtKB: A0A8I6AP90 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000096241   ⟸   ENSRNOT00000104622
Protein Domains
IF rod

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31971 BioCyc
Ensembl Genes ENSRNOG00000067545 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000104622.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  Single helix bin UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/TrEMBL
InterPro IF_conserved UniProtKB/TrEMBL
  IF_rod_dom UniProtKB/TrEMBL
  Keratin_2_head UniProtKB/TrEMBL
  Keratin_II UniProtKB/TrEMBL
NCBI Gene LOC102553726 ENTREZGENE
PANTHER GATA-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  KERATIN, TYPE II CYTOSKELETAL 6A-RELATED UniProtKB/TrEMBL
Pfam Filament UniProtKB/TrEMBL
  Keratin_2_head UniProtKB/TrEMBL
PhenoGen LOC102553726 PhenoGen
PRINTS TYPE2KERATIN UniProtKB/TrEMBL
PROSITE IF_ROD_1 UniProtKB/TrEMBL
  IF_ROD_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000067545 RatGTEx
RNAcentral URS0000CCF5BD RNACentral
SMART Filament UniProtKB/TrEMBL
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/TrEMBL
UniProt A0A8I6AP90 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102553726  keratin, type II cytoskeletal 6A-like      Symbol and Name status set to provisional 70820 PROVISIONAL