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Gene: Pou6f1 (POU class 6 homeobox 1) Rattus norvegicus
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Symbol: Pou6f1
Name: POU class 6 homeobox 1
RGD ID: 620615
Description: Exhibits DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to localize to actin cytoskeleton; nuclear body; and nuclear chromatin. Orthologous to human POU6F1 (POU class 6 homeobox 1); INTERACTS WITH ammonium chloride; bisphenol A; calcium atom.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: brain-5; brain-specific homeobox/POU domain protein 5; brn-5 protein; Brn5; POU domain, class 6, transcription factor 1
Orthologs:
Homo sapiens (human) : POU6F1 (POU class 6 homeobox 1)  HGNC  Alliance
Mus musculus (house mouse) : Pou6f1 (POU domain, class 6, transcription factor 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pou6f1 (POU class 6 homeobox 1)
Pan paniscus (bonobo/pygmy chimpanzee) : POU6F1 (POU class 6 homeobox 1)
Canis lupus familiaris (dog) : POU6F1 (POU class 6 homeobox 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pou6f1 (POU class 6 homeobox 1)
Sus scrofa (pig) : POU6F1 (POU class 6 homeobox 1)
Chlorocebus sabaeus (African green monkey) : POU6F1 (POU class 6 homeobox 1)
Heterocephalus glaber (naked mole-rat) : Pou6f1 (POU class 6 homeobox 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07142,201,614 - 142,225,256 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,204,036 - 142,210,738 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,006,269 - 140,030,316 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47139,325,783 - 139,332,485 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17139,402,219 - 139,408,918 (-)NCBI
Celera7128,155,577 - 128,162,279 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pou6f1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 620615
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.