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Gene: Pou6f1 (POU class 6 homeobox 1) Rattus norvegicus
Symbol: Pou6f1
Name: POU class 6 homeobox 1
RGD ID: 620615
Description: Exhibits DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to localize to actin cytoskeleton; nuclear body; and nuclear chromatin. Orthologous to human POU6F1 (POU class 6 homeobox 1); INTERACTS WITH ammonium chloride; bisphenol A; calcium atom.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: brain-5; brain-specific homeobox/POU domain protein 5; brn-5 protein; Brn5; POU domain, class 6, transcription factor 1
Homo sapiens (human) : POU6F1 (POU class 6 homeobox 1)  HGNC  Alliance
Mus musculus (house mouse) : Pou6f1 (POU domain, class 6, transcription factor 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pou6f1 (POU class 6 homeobox 1)
Pan paniscus (bonobo/pygmy chimpanzee) : POU6F1 (POU class 6 homeobox 1)
Canis lupus familiaris (dog) : POU6F1 (POU class 6 homeobox 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pou6f1 (POU class 6 homeobox 1)
Sus scrofa (pig) : POU6F1 (POU class 6 homeobox 1)
Chlorocebus sabaeus (African green monkey) : POU6F1 (POU class 6 homeobox 1)
Heterocephalus glaber (naked mole-rat) : Pou6f1 (POU class 6 homeobox 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.07142,201,614 - 142,225,256 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,204,036 - 142,210,738 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,006,269 - 140,030,316 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47139,325,783 - 139,332,485 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17139,402,219 - 139,408,918 (-)NCBI
Celera7128,155,577 - 128,162,279 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)

References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Pou6f1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 620615
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.