Alg12 (ALG12, alpha-1,6-mannosyltransferase)

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Gene: Alg12 (ALG12, alpha-1,6-mannosyltransferase) Rattus norvegicus

Analyze

Symbol:

Alg12

Name:

ALG12, alpha-1,6-mannosyltransferase

RGD ID:

1304826

Description:

Predicted to enable alpha-1,6-mannosyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ig. Orthologous to human ALG12 (ALG12 alpha-1,6-mannosyltransferase); PARTICIPATES IN N-linked glycan biosynthetic pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

alpha-1,6-mannosyltransferase ALG12; asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase); asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase; asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase (S. cerevisiae); dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase; LOC315212

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ALG12 (ALG12 alpha-1,6-mannosyltransferase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Alg12 (asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Alg12 (ALG12 alpha-1,6-mannosyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ALG12 (ALG12 alpha-1,6-mannosyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ALG12 (ALG12 alpha-1,6-mannosyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Alg12 (ALG12 alpha-1,6-mannosyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ALG12 (ALG12 alpha-1,6-mannosyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ALG12 (ALG12 alpha-1,6-mannosyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Alg12 (ALG12 alpha-1,6-mannosyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ALG12 (ALG12 alpha-1,6-mannosyltransferase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Alg12 (asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	alg12 (ALG12 alpha-1,6-mannosyltransferase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ALG12	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG8412	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ZC513.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	alg12	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	119,895,112 - 119,909,488 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	119,895,120 - 119,909,458 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	121,646,302 - 121,660,345 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	123,872,483 - 123,886,525 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	123,835,727 - 123,849,769 (-)	NCBI	Rnor_WKY
Rnor_6.0	7	129,798,663 - 129,812,677 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	129,798,663 - 129,812,388 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	129,487,375 - 129,501,391 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	127,109,296 - 127,123,482 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	127,144,058 - 127,157,713 (-)	NCBI
Celera	7	116,368,850 - 116,383,002 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

chromosome 22q13 duplication syndrome (ISO)

congenital disorder of glycosylation (ISO)

congenital disorder of glycosylation Ig (ISO)

Dwarfism (ISO)

genetic disease (ISO)

intellectual disability (ISO)

metachromatic leukodystrophy (ISO)

Phelan-McDermid syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-amino-2-deoxy-D-glucopyranose (ISO)

4-amino-2,6-dinitrotoluene (EXP)

acrylamide (EXP)

aldehydo-D-glucosamine (ISO)

aldehydo-D-glucose (ISO)

amiodarone (ISO)

benzo[a]pyrene (ISO)

beta-D-glucosamine (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bleomycin A5 (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chlormequat chloride (EXP)

D-glucose (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

flutamide (EXP)

fulvestrant (ISO)

gentamycin (EXP)

glafenine (EXP)

glucose (ISO)

isoindoles (ISO)

nefazodone (EXP)

nimesulide (EXP)

p-toluidine (EXP)

paracetamol (ISO)

paraquat (EXP)

propiconazole (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

dolichol-linked oligosaccharide biosynthetic process (ISO)

protein N-linked glycosylation (IBA)

Cellular Component

endoplasmic reticulum membrane (IBA)

Molecular Function

alpha-1,6-mannosyltransferase activity (IBA)

dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichol alpha-1,6-mannosyltransferase (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

N-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:8889548	PMID:11983712	PMID:12477932	PMID:19946888

Genomics

Comparative Map Data

Alg12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	119,895,112 - 119,909,488 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	119,895,120 - 119,909,458 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	121,646,302 - 121,660,345 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	123,872,483 - 123,886,525 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	123,835,727 - 123,849,769 (-)	NCBI	Rnor_WKY
Rnor_6.0	7	129,798,663 - 129,812,677 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	129,798,663 - 129,812,388 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	129,487,375 - 129,501,391 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	127,109,296 - 127,123,482 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	127,144,058 - 127,157,713 (-)	NCBI
Celera	7	116,368,850 - 116,383,002 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

ALG12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	49,859,311 - 49,918,438 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	22	49,900,229 - 49,918,438 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	50,293,877 - 50,312,086 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	48,682,856 - 48,698,110 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	48,617,716 - 48,632,967	NCBI
Celera	22	34,218,131 - 34,233,386 (-)	NCBI		Celera
Cytogenetic Map	22	q13.33	NCBI
HuRef	22	33,243,697 - 33,258,951 (-)	NCBI		HuRef
CHM1_1	22	50,255,612 - 50,270,866 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	50,363,473 - 50,422,920 (-)	NCBI		T2T-CHM13v2.0

Alg12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	88,689,448 - 88,703,498 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	88,689,447 - 88,703,521 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	88,805,243 - 88,819,318 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	88,805,244 - 88,819,318 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	88,635,673 - 88,649,748 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	88,633,011 - 88,647,050 (-)	NCBI		MGSCv36	mm8
Celera	15	90,930,993 - 90,945,139 (-)	NCBI		Celera
Cytogenetic Map	15	E3	NCBI

Alg12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	33,029,116 - 33,039,700 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	33,030,994 - 33,039,622 (-)	NCBI	ChiLan1.0	ChiLan1.0

ALG12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	22	62,472,880 - 62,502,623 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	30,110,873 - 30,139,359 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	49,126,228 - 49,136,740 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	49,126,234 - 49,136,740 (-)	Ensembl	panpan1.1		panPan2

ALG12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	17,293,945 - 17,300,982 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	17,293,552 - 17,300,974 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	17,273,167 - 17,280,240 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	18,022,529 - 18,029,613 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	18,022,383 - 18,030,178 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	17,745,893 - 17,752,957 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	18,068,971 - 18,076,042 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	18,201,146 - 18,208,214 (+)	NCBI		UU_Cfam_GSD_1.0

Alg12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	844,215 - 855,173 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936629	844,277 - 864,874 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ALG12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	717,028 - 729,397 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	716,928 - 727,239 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	110,955,687 - 110,960,330 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ALG12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	32,395,413 - 32,420,160 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666045	92,975,582 - 92,992,252 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Alg12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	732,648 - 754,146 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	745,133 - 754,055 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Alg12
42 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	154
Count of miRNA genes:	121
Interacting mature miRNAs:	131
Transcripts:	ENSRNOT00000065848
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	73829340	130221005	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	80221299	124373579	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	80221299	125221299	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	81737938	126737938	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	83153392	128153392	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
71114	Niddm14	Non-insulin dependent diabetes mellitus QTL 14	4.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	84257275	129257275	Rat
2298475	Eau6	Experimental allergic uveoretinitis QTL 6		0.0029	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	7	84257275	129257275	Rat
1558655	Swd4	Spike wave discharge measurement QTL 4	3.68	0.0002	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge severity grade (CMO:0001988)	7	86983365	131983365	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	91412594	129807172	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	102297359	133492884	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat
631663	Bw6	Body weight QTL 6	3.4		body mass (VT:0001259)	body weight (CMO:0000012)	7	111075573	134976056	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	111182207	135012528	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	112308254	133492884	Rat
1357339	Stl14	Serum triglyceride level QTL 14	3.45	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	112729683	133492707	Rat
1582240	Sffal1	Serum free fatty acids level QTL 1	3.4	0.0021	blood free fatty acid amount (VT:0001553)	serum free fatty acids level (CMO:0000547)	7	116677010	124049952	Rat
631201	Panci1	Pancreas inflammation QTL 1	0	0.001	pancreas integrity trait (VT:0010560)	percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)	7	116677189	127103496	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	119513385	135012528	Rat

Markers in Region

AA893241

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	119,895,225 - 119,895,451 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	129,798,777 - 129,799,002	NCBI	Rnor6.0
Rnor_5.0	7	129,487,489 - 129,487,714	UniSTS	Rnor5.0
RGSC_v3.4	7	127,109,410 - 127,109,635	UniSTS	RGSC3.4
Celera	7	116,368,964 - 116,369,189	UniSTS
RH 3.4 Map	9	709.89	UniSTS
Cytogenetic Map	7	q34	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	24	39	33	17	33			67	28	40	9
Low		19	18	8	2	8	8	11	7	7	1	2	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC161934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF409974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM050024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000065848 ⟹ ENSRNOP00000061731

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	119,895,121 - 119,909,416 (-)	Ensembl
Rnor_6.0 Ensembl	7	129,798,663 - 129,812,388 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000096721 ⟹ ENSRNOP00000082244

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	119,895,120 - 119,909,458 (-)	Ensembl

RefSeq Acc Id:

NM_001108104 ⟹ NP_001101574

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	119,895,112 - 119,909,304 (-)	NCBI
Rnor_6.0	7	129,798,663 - 129,812,388 (-)	NCBI
Rnor_5.0	7	129,487,375 - 129,501,391 (-)	NCBI
RGSC_v3.4	7	127,109,296 - 127,123,482 (-)	RGD
Celera	7	116,368,850 - 116,383,002 (-)	RGD

Sequence:

show sequence

TGCGGATAGCAGAGGAGGTGCATGAAGTTTAAAGCTCTTCATGGCTGGCAAGAAATCATCAGGC
AGGCAGTCACTGCTGCCTCTGGGGCTGTTGGTCACTGTAGCTGCCATCCACCTTGTTGCCTGTC
CGTACACCAAGGTAGAAGAGAGCTTCAACCTGCAGGCTACGCATGACCTTCTGTATCACCAGCT
GGACATAGACAAGTATGACCACCATGAGTTTCCTGGAGTCGTTCCCAGGACATTCCTGGGGCCG
CTGTTGATTGCCGCGTTCTCCAGCCCTGTGGTTTATGTGCTTTCACTGTTGGAAGTCTCCAGAT
TTTATTCTCAGCTGATAGTCAGAGGCGTCCTTGGACTTGGTGTGATTTTTGGACTCTGGACATT
ACAGAAGGCAGTAAGACAGCAGTTCGGGGCTACGGTGGCTGTCATGTTCTGCTGGATATCAGCC
ACACAGTTTCATCTCATGTTCTACTGTACGAGGACGCTTCCCAACGTGTTGGCCCTGGCTGTGG
TTTTACCGGCCCTCACAGCCTGGCTGCAGCACAGATGGGCCGTCTTTGTCTGGCTCTCCGCCTT
TGTCATCATTGGCTTCAGGGCTGAGCTGGCTATGCTGCTGGGCATCATGCTGCTGCTGACCTTG
TACCAAAGGAGGATGTCTGTGGCCAGATTGCTCCAGCACGCCATCCCAGCAGGGATTCTTTGCC
TAGGGCTGACGGTTGCTGTGGACTCCTATTTCTGGCGATACCTTGTGTGGCCAGAAGGAGTGGT
GCTTTGGTACAACACTGTCCTGAACAAAAGTTCCAACTGGGGTACCTCCCCACTCCTGTGGTAT
TTCTACTCAGCCCTGCCCCGAGGCCTGGGCTGCAGCCTTCTCTTCATACCCCTGGGTGCAGTGG
ACAGGAGAACCTTTGCGTTGGCTCTGCCAAGCCTTGGATTCGTGGCTTTATACTCGCTCCTCCC
ACACAAGGAACTGCGGTTCATCATCTATACCTTCCCTGTACTCAACATCATGGCTGCCAGAGGC
TGCACCTATGTCCTGAATAAAAAGTCTTGGCCGTACAAGGTGAGAGCTCTGCTGGTGTTTGGAC
ATGTCGTGGTAAATGTGGCGTCTACAGCCACATCCCTCTATGTGTCCCATTTCAACTACCCTGG
TGGGGTTGCGATGCAGCGGCTACATGAACTGGTGCCACCTCAGACAGATGTCCTTGTACACATC
GATGTGGCTGCTGCCCAGACAGGCGTGTCACGGTTTCTACAGGTCAACGATGACTGGAGGTATG
ACAAGAGGGAAGATGTGCAGCTGGGAGCAGCGGGCATGCTGGACTACACCCACATCATCATGGA
GGCAGTGCCTGGGCACCTGGCCCTCTACAGGGACACGCACCGAGTCCTAGCCCGGATTGAGGCC
ACTACAGGTGTGAGCCTGAATCTAATGAAAGTGCCGCCCTTTGATGTCAGCCTGCAGACAAAGC
TGGTACTTCTAGAGCGGCTGCTTAGGCCGGCCTGAGGACAGGAGATCTGGAGCATCAAGTGTGG
TCACCACCTAACTCAGTAAAGACAGGAAAACAGCACAGGCCAGGGACTTCCAGTAACCCCCGGC
GTTGCCCTGCAGCAGGCTGGGCCAGGCCCTACAACAGCCACACCTGAGACACAGGGCCGAGAAT
GTGGAGCCACCACCAAGTGTGATAATGGCCTGTTCAAACCTGTCTGCCATGGTTAGGTGACCCA
CAGGAGTGTTTATATTCATTCTGGGAGCCATTCAGAACCAAGAGGACAATGAGTCAGGCTAGAA
CGCCCTGCCACCCTGCTCTGCAGTGACCCCACTATATGTTTCTTGCCCCTGAACCACACTTGTT
GCCCATGGCCTCAGGAGACGACGATGTAAAACCAGGTCTTTACAGATTAGACACACACACACAC
ACCACCAATCATGGCAGCTGTTATAGTCCGAGGCATGCTACCTCCATTTCGGATTAGTTCTGAG
GACATAACACGTTTTCATAAAAGAACAGAAATAAAAATTATGTTATATTATGTCTTAAAAAAAA
AAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017594874 ⟹ XP_017450363

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	119,895,118 - 119,909,488 (-)	NCBI
Rnor_6.0	7	129,798,669 - 129,812,677 (-)	NCBI

Sequence:

show sequence

CCTGCCTGATGTGGACCAATTGAGGCTCGCCACGAGAAGCCACCAATGAGAAAGCCCCGGGTCA
GCGTCCCGCGAGAATGAGGCGGAACCGTAATCTATCCGGTCTTCTTGCCCCGCCCTCCACGAGT
GGCCTGCGGCGGCCATCTTTTCTCCGGGCGGGAAGTGCCCGCCTCTGTGGCCAGCTTGAGCAAT
GGTGGCCATGTTAAGTTCGGGCAAAGATTTGGCTTCTTGGCCTGGCTTCCGCGGCCGGCTTCCT
GCGGAAGGTAGTCTTGTGCATGAAGTTTAAAGCTCTTCATGGCTGGCAAGAAATCATCAGGCAG
GCAGTCACTGCTGCCTCTGGGGCTGTTGGTCACTGTAGCTGCCATCCACCTTGTTGCCTGTCCG
TACACCAAGGTAGAAGAGAGCTTCAACCTGCAGGCTACGCATGACCTTCTGTATCACCAGCTGG
ACATAGACAAGTATGACCACCATGAGTTTCCTGGAGTCGTTCCCAGGACATTCCTGGGGCCGCT
GTTGATTGCCGCGTTCTCCAGCCCTGTGGTTTATGTGCTTTCACTGTTGGAAGTCTCCAGATTT
TATTCTCAGCTGATAGTCAGAGGCGTCCTTGGACTTGGTGTGATTTTTGGACTCTGGACATTAC
AGAAGGCAGTAAGACAGCAGTTCGGGGCTACGGTGGCTGTCATGTTCTGCTGGATATCAGCCAC
ACAGTTTCATCTCATGTTCTACTGTACGAGGACGCTTCCCAACGTGTTGGCCCTGGCTGTGGTT
TTACCGGCCCTCACAGCCTGGCTGCAGCACAGATGGGCCGTCTTTGTCTGGCTCTCCGCCTTTG
TCATCATTGGCTTCAGGGCTGAGCTGGCTATGCTGCTGGGCATCATGCTGCTGCTGACCTTGTA
CCAAAGGAGGATGTCTGTGGCCAGATTGCTCCAGCACGCCATCCCAGCAGGGATTCTTTGCCTA
GGGCTGACGGTTGCTGTGGACTCCTATTTCTGGCGATACCTTGTGTGGCCAGAAGGAGTGGTGC
TTTGGTACAACACTGTCCTGAACAAAAGTTCCAACTGGGGTACCTCCCCACTCCTGTGGTATTT
CTACTCAGCCCTGCCCCGAGGCCTGGGCTGCAGCCTTCTCTTCATACCCCTGGGTGCAGTGGAC
AGGAGAACCTTTGCGTTGGCTCTGCCAAGCCTTGGATTCGTGGCTTTATACTCGCTCCTCCCAC
ACAAGGAACTGCGGTTCATCATCTATACCTTCCCTGTACTCAACATCATGGCTGCCAGAGGCTG
CACCTATGTCCTGAATAAAAAGTCTTGGCCGTACAAGGTGAGAGCTCTGCTGGTGTTTGGACAT
GTCGTGGTAAATGTGGCGTCTACAGCCACATCCCTCTATGTGTCCCATTTCAACTACCCTGGTG
GGGTTGCGATGCAGCGGCTACATGAACTGGTGCCACCTCAGACAGATGTCCTTGTACACATCGA
TGTGGCTGCTGCCCAGACAGGCGTGTCACGGTTTCTACAGGTCAACGATGACTGGAGGTATGAC
AAGAGGGAAGATGTGCAGCTGGGAGCAGCGGGCATGCTGGACTACACCCACATCATCATGGAGG
CAGTGCCTGGGCACCTGGCCCTCTACAGGGACACGCACCGAGTCCTAGCCCGGATTGAGGCCAC
TACAGGTGTGAGCCTGAATCTAATGAAAGTGCCGCCCTTTGATGTCAGCCTGCAGACAAAGCTG
GTACTTCTAGAGCGGCTGCTTAGGCCGGCCTGAGGACAGGAGATCTGGAGCATCAAGTGTGGTC
ACCACCTAACTCAGTAAAGACAGGAAAACAGCACAGGCCAGGGACTTCCAGTAACCCCCGGCGT
TGCCCTGCAGCAGGCTGGGCCAGGCCCTACAACAGCCACACCTGAGACACAGGGCCGAGAATGT
GGAGCCACCACCAAGTGTGATAATGGCCTGTTCAAACCTGTCTGCCATGGTTAGGTGACCCACA
GGAGTGTTTATATTCATTCTGGGAGCCATTCAGAACCAAGAGGACAATGAGTCAGGCTAGAACG
CCCTGCCACCCTGCTCTGCAGTGACCCCACTATATGTTTCTTGCCCCTGAACCACACTTGTTGC
CCATGGCCTCAGGAGACGACGATGTAAAACCAGGTCTTTACAGATTAGACACACACACACACAC
CACCAATCATGGCAGCTGTTATAGTCCGAGGCATGCTACCTCCATTTCGGATTAGTTCTGAGGA
CATAACACGTTTTCATAAAAGAACAGAAATAAAAATTATGTTATATTA

hide sequence

RefSeq Acc Id:

XM_017594875 ⟹ XP_017450364

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	119,895,116 - 119,908,994 (-)	NCBI
Rnor_6.0	7	129,798,669 - 129,812,190 (-)	NCBI

Sequence:

show sequence

TCTATAAACTGCTCTACCTCTGGGTCCGGCTCAATGTGGTTGGAGGGGGGGCAGTAGTCGACAT
TTCCGCAGGGGGTTCAGACAGTGAGTTCACAATGACCTTTCGAACTTTAAGTGACTTGAGTGAG
CAGGAGGAGGAGACGATGTGAATTATCTGTATTTTAGAGAACATCTGTTTATATAAACAATACA
GTTTCGTCTGGTCTTTGGTTTACAAGTAGGCCTCATTACATCAGATAAACACTTCCAGGTTAAA
GCCACAATTTGAACGAATGACTCCGACAGTTTCCTTGTTAGGTTTGGAGTCACAATTGTCAGGG
ACAACAGGATCTTTGAAGGGTGCTATCTAATCTGAGGTGCCCTCCTTCTCCACGCCACATTTGT
ATCTGAGCTTGGCTGCTGGAAGGCGATTAGCCATCTGCCTTCCCTGCAGCTGGCCCCATTCCTG
CCGATAGCTGGGTTTTATGTACTGGCGAATATCTACCTATATTGTTTTGCTCCTGGCTGGGTAT
TCCAGCTCACCCTGGTCTGTTGTCTTGGAAAATGGCTGCTGTTGGTCCTCAGCAGAAAACACAC
CCCTTTGTGGCTGTGAGGTAGGAGGAGGATCAGGTGCATGAAGTTTAAAGCTCTTCATGGCTGG
CAAGAAATCATCAGGCAGGCAGTCACTGCTGCCTCTGGGGCTGTTGGTCACTGTAGCTGCCATC
CACCTTGTTGCCTGTCCGTACACCAAGGTAGAAGAGAGCTTCAACCTGCAGGCTACGCATGACC
TTCTGTATCACCAGCTGGACATAGACAAGTATGACCACCATGAGTTTCCTGGAGTCGTTCCCAG
GACATTCCTGGGGCCGCTGTTGATTGCCGCGTTCTCCAGCCCTGTGGTTTATGTGCTTTCACTG
TTGGAAGTCTCCAGATTTTATTCTCAGCTGATAGTCAGAGGCGTCCTTGGACTTGGTGTGATTT
TTGGACTCTGGACATTACAGAAGGCAGTAAGACAGCAGTTCGGGGCTACGGTGGCTGTCATGTT
CTGCTGGATATCAGCCACACAGTTTCATCTCATGTTCTACTGTACGAGGACGCTTCCCAACGTG
TTGGCCCTGGCTGTGGTTTTACCGGCCCTCACAGCCTGGCTGCAGCACAGATGGGCCGTCTTTG
TCTGGCTCTCCGCCTTTGTCATCATTGGCTTCAGGGCTGAGCTGGCTATGCTGCTGGGCATCAT
GCTGCTGCTGACCTTGTACCAAAGGAGGATGTCTGTGGCCAGATTGCTCCAGCACGCCATCCCA
GCAGGGATTCTTTGCCTAGGGCTGACGGTTGCTGTGGACTCCTATTTCTGGCGATACCTTGTGT
GGCCAGAAGGAGTGGTGCTTTGGTACAACACTGTCCTGAACAAAAGTTCCAACTGGGGTACCTC
CCCACTCCTGTGGTATTTCTACTCAGCCCTGCCCCGAGGCCTGGGCTGCAGCCTTCTCTTCATA
CCCCTGGGTGCAGTGGACAGGAGAACCTTTGCGTTGGCTCTGCCAAGCCTTGGATTCGTGGCTT
TATACTCGCTCCTCCCACACAAGGAACTGCGGTTCATCATCTATACCTTCCCTGTACTCAACAT
CATGGCTGCCAGAGGCTGCACCTATGTCCTGAATAAAAAGTCTTGGCCGTACAAGGTGAGAGCT
CTGCTGGTGTTTGGACATGTCGTGGTAAATGTGGCGTCTACAGCCACATCCCTCTATGTGTCCC
ATTTCAACTACCCTGGTGGGGTTGCGATGCAGCGGCTACATGAACTGGTGCCACCTCAGACAGA
TGTCCTTGTACACATCGATGTGGCTGCTGCCCAGACAGGCGTGTCACGGTTTCTACAGGTCAAC
GATGACTGGAGGTATGACAAGAGGGAAGATGTGCAGCTGGGAGCAGCGGGCATGCTGGACTACA
CCCACATCATCATGGAGGCAGTGCCTGGGCACCTGGCCCTCTACAGGGACACGCACCGAGTCCT
AGCCCGGATTGAGGCCACTACAGGTGTGAGCCTGAATCTAATGAAAGTGCCGCCCTTTGATGTC
AGCCTGCAGACAAAGCTGGTACTTCTAGAGCGGCTGCTTAGGCCGGCCTGAGGACAGGAGATCT
GGAGCATCAAGTGTGGTCACCACCTAACTCAGTAAAGACAGGAAAACAGCACAGGCCAGGGACT
TCCAGTAACCCCCGGCGTTGCCCTGCAGCAGGCTGGGCCAGGCCCTACAACAGCCACACCTGAG
ACACAGGGCCGAGAATGTGGAGCCACCACCAAGTGTGATAATGGCCTGTTCAAACCTGTCTGCC
ATGGTTAGGTGACCCACAGGAGTGTTTATATTCATTCTGGGAGCCATTCAGAACCAAGAGGACA
ATGAGTCAGGCTAGAACGCCCTGCCACCCTGCTCTGCAGTGACCCCACTATATGTTTCTTGCCC
CTGAACCACACTTGTTGCCCATGGCCTCAGGAGACGACGATGTAAAACCAGGTCTTTACAGATT
AGACACACACACACACACCACCAATCATGGCAGCTGTTATAGTCCGAGGCATGCTACCTCCATT
TCGGATTAGTTCTGAGGACATAACACGTTTTCATAAAAGAACAGAAATAAAAATTATGTTATAT
TA

hide sequence

RefSeq Acc Id:

XM_017594876 ⟹ XP_017450365

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	119,895,118 - 119,909,488 (-)	NCBI
Rnor_6.0	7	129,798,669 - 129,812,677 (-)	NCBI

Sequence:

show sequence

CCTGCCTGATGTGGACCAATTGAGGCTCGCCACGAGAAGCCACCAATGAGAAAGCCCCGGGTCA
GCGTCCCGCGAGAATGAGGCGGAACCGTAATCTATCCGGTCTTCTTGCCCCGCCCTCCACGAGT
GGCCTGCGGCGGCCATCTTTTCTCCGGGCGGGAAGTGCCCGCCTCTGTGGCCAGCTTGAGCAAT
GGTGGCCATGTTAAGTTCGGGCAAAGATTTGGCTTCTTGGCCTGGCTTCCGCGGCCGGCTTCCT
GCGGAAGGTGCATGAAGTTTAAAGCTCTTCATGGCTGGCAAGAAATCATCAGGCAGGCAGTCAC
TGCTGCCTCTGGGGCTGTTGGTCACTGTAGCTGCCATCCACCTTGTTGCCTGTCCGTACACCAA
GGTAGAAGAGAGCTTCAACCTGCAGGCTACGCATGACCTTCTGTATCACCAGCTGGACATAGAC
AAGTATGACCACCATGAGTTTCCTGGAGTCGTTCCCAGGACATTCCTGGGGCCGCTGTTGATTG
CCGCGTTCTCCAGCCCTGTGGTTTATGTGCTTTCACTGTTGGAAGTCTCCAGATTTTATTCTCA
GCTGATAGTCAGAGGCGTCCTTGGACTTGGTGTGATTTTTGGACTCTGGACATTACAGAAGGCA
GTAAGACAGCAGTTCGGGGCTACGGTGGCTGTCATGTTCTGCTGGATATCAGCCACACAGTTTC
ATCTCATGTTCTACTGTACGAGGACGCTTCCCAACGTGTTGGCCCTGGCTGTGGTTTTACCGGC
CCTCACAGCCTGGCTGCAGCACAGATGGGCCGTCTTTGTCTGGCTCTCCGCCTTTGTCATCATT
GGCTTCAGGGCTGAGCTGGCTATGCTGCTGGGCATCATGCTGCTGCTGACCTTGTACCAAAGGA
GGATGTCTGTGGCCAGATTGCTCCAGCACGCCATCCCAGCAGGGATTCTTTGCCTAGGGCTGAC
GGTTGCTGTGGACTCCTATTTCTGGCGATACCTTGTGTGGCCAGAAGGAGTGGTGCTTTGGTAC
AACACTGTCCTGAACAAAAGTTCCAACTGGGGTACCTCCCCACTCCTGTGGTATTTCTACTCAG
CCCTGCCCCGAGGCCTGGGCTGCAGCCTTCTCTTCATACCCCTGGGTGCAGTGGACAGGAGAAC
CTTTGCGTTGGCTCTGCCAAGCCTTGGATTCGTGGCTTTATACTCGCTCCTCCCACACAAGGAA
CTGCGGTTCATCATCTATACCTTCCCTGTACTCAACATCATGGCTGCCAGAGGCTGCACCTATG
TCCTGAATAAAAAGTCTTGGCCGTACAAGGTGAGAGCTCTGCTGGTGTTTGGACATGTCGTGGT
AAATGTGGCGTCTACAGCCACATCCCTCTATGTGTCCCATTTCAACTACCCTGGTGGGGTTGCG
ATGCAGCGGCTACATGAACTGGTGCCACCTCAGACAGATGTCCTTGTACACATCGATGTGGCTG
CTGCCCAGACAGGCGTGTCACGGTTTCTACAGGTCAACGATGACTGGAGGTATGACAAGAGGGA
AGATGTGCAGCTGGGAGCAGCGGGCATGCTGGACTACACCCACATCATCATGGAGGCAGTGCCT
GGGCACCTGGCCCTCTACAGGGACACGCACCGAGTCCTAGCCCGGATTGAGGCCACTACAGGTG
TGAGCCTGAATCTAATGAAAGTGCCGCCCTTTGATGTCAGCCTGCAGACAAAGCTGGTACTTCT
AGAGCGGCTGCTTAGGCCGGCCTGAGGACAGGAGATCTGGAGCATCAAGTGTGGTCACCACCTA
ACTCAGTAAAGACAGGAAAACAGCACAGGCCAGGGACTTCCAGTAACCCCCGGCGTTGCCCTGC
AGCAGGCTGGGCCAGGCCCTACAACAGCCACACCTGAGACACAGGGCCGAGAATGTGGAGCCAC
CACCAAGTGTGATAATGGCCTGTTCAAACCTGTCTGCCATGGTTAGGTGACCCACAGGAGTGTT
TATATTCATTCTGGGAGCCATTCAGAACCAAGAGGACAATGAGTCAGGCTAGAACGCCCTGCCA
CCCTGCTCTGCAGTGACCCCACTATATGTTTCTTGCCCCTGAACCACACTTGTTGCCCATGGCC
TCAGGAGACGACGATGTAAAACCAGGTCTTTACAGATTAGACACACACACACACACCACCAATC
ATGGCAGCTGTTATAGTCCGAGGCATGCTACCTCCATTTCGGATTAGTTCTGAGGACATAACAC
GTTTTCATAAAAGAACAGAAATAAAAATTATGTTATATTA

hide sequence

RefSeq Acc Id:

XM_017594877 ⟹ XP_017450366

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	119,895,116 - 119,909,275 (-)	NCBI
Rnor_6.0	7	129,798,669 - 129,812,365 (-)	NCBI

Sequence:

show sequence

GCGCGCCGCCGGGATTGGGGTACTTGGGAGGTGATGAGGCCGGGGCTCATCCGAGAGCGCGTGA
CGGCCTTTGAGTTCCTCACCTGGGGAACGGACCTCTCACTTAGGGGCTGGATATCTCACCTGAG
GCCTGGACCTTTCATCTATCTTCCTCACCTGGCGGCCGCAGGTGCATGAAGTTTAAAGCTCTTC
ATGGCTGGCAAGAAATCATCAGGCAGGCAGTCACTGCTGCCTCTGGGGCTGTTGGTCACTGTAG
CTGCCATCCACCTTGTTGCCTGTCCGTACACCAAGGTAGAAGAGAGCTTCAACCTGCAGGCTAC
GCATGACCTTCTGTATCACCAGCTGGACATAGACAAGTATGACCACCATGAGTTTCCTGGAGTC
GTTCCCAGGACATTCCTGGGGCCGCTGTTGATTGCCGCGTTCTCCAGCCCTGTGGTTTATGTGC
TTTCACTGTTGGAAGTCTCCAGATTTTATTCTCAGCTGATAGTCAGAGGCGTCCTTGGACTTGG
TGTGATTTTTGGACTCTGGACATTACAGAAGGCAGTAAGACAGCAGTTCGGGGCTACGGTGGCT
GTCATGTTCTGCTGGATATCAGCCACACAGTTTCATCTCATGTTCTACTGTACGAGGACGCTTC
CCAACGTGTTGGCCCTGGCTGTGGTTTTACCGGCCCTCACAGCCTGGCTGCAGCACAGATGGGC
CGTCTTTGTCTGGCTCTCCGCCTTTGTCATCATTGGCTTCAGGGCTGAGCTGGCTATGCTGCTG
GGCATCATGCTGCTGCTGACCTTGTACCAAAGGAGGATGTCTGTGGCCAGATTGCTCCAGCACG
CCATCCCAGCAGGGATTCTTTGCCTAGGGCTGACGGTTGCTGTGGACTCCTATTTCTGGCGATA
CCTTGTGTGGCCAGAAGGAGTGGTGCTTTGGTACAACACTGTCCTGAACAAAAGTTCCAACTGG
GGTACCTCCCCACTCCTGTGGTATTTCTACTCAGCCCTGCCCCGAGGCCTGGGCTGCAGCCTTC
TCTTCATACCCCTGGGTGCAGTGGACAGGAGAACCTTTGCGTTGGCTCTGCCAAGCCTTGGATT
CGTGGCTTTATACTCGCTCCTCCCACACAAGGAACTGCGGTTCATCATCTATACCTTCCCTGTA
CTCAACATCATGGCTGCCAGAGGCTGCACCTATGTCCTGAATAAAAAGTCTTGGCCGTACAAGG
TGAGAGCTCTGCTGGTGTTTGGACATGTCGTGGTAAATGTGGCGTCTACAGCCACATCCCTCTA
TGTGTCCCATTTCAACTACCCTGGTGGGGTTGCGATGCAGCGGCTACATGAACTGGTGCCACCT
CAGACAGATGTCCTTGTACACATCGATGTGGCTGCTGCCCAGACAGGCGTGTCACGGTTTCTAC
AGGTCAACGATGACTGGAGGTATGACAAGAGGGAAGATGTGCAGCTGGGAGCAGCGGGCATGCT
GGACTACACCCACATCATCATGGAGGCAGTGCCTGGGCACCTGGCCCTCTACAGGGACACGCAC
CGAGTCCTAGCCCGGATTGAGGCCACTACAGGTGTGAGCCTGAATCTAATGAAAGTGCCGCCCT
TTGATGTCAGCCTGCAGACAAAGCTGGTACTTCTAGAGCGGCTGCTTAGGCCGGCCTGAGGACA
GGAGATCTGGAGCATCAAGTGTGGTCACCACCTAACTCAGTAAAGACAGGAAAACAGCACAGGC
CAGGGACTTCCAGTAACCCCCGGCGTTGCCCTGCAGCAGGCTGGGCCAGGCCCTACAACAGCCA
CACCTGAGACACAGGGCCGAGAATGTGGAGCCACCACCAAGTGTGATAATGGCCTGTTCAAACC
TGTCTGCCATGGTTAGGTGACCCACAGGAGTGTTTATATTCATTCTGGGAGCCATTCAGAACCA
AGAGGACAATGAGTCAGGCTAGAACGCCCTGCCACCCTGCTCTGCAGTGACCCCACTATATGTT
TCTTGCCCCTGAACCACACTTGTTGCCCATGGCCTCAGGAGACGACGATGTAAAACCAGGTCTT
TACAGATTAGACACACACACACACACCACCAATCATGGCAGCTGTTATAGTCCGAGGCATGCTA
CCTCCATTTCGGATTAGTTCTGAGGACATAACACGTTTTCATAAAAGAACAGAAATAAAAATTA
TGTTATATTA

hide sequence

RefSeq Acc Id:

XM_039079303 ⟹ XP_038935231

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	119,895,116 - 119,909,044 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101574	(Get FASTA)	NCBI Sequence Viewer
	XP_017450363	(Get FASTA)	NCBI Sequence Viewer
	XP_017450364	(Get FASTA)	NCBI Sequence Viewer
	XP_017450365	(Get FASTA)	NCBI Sequence Viewer
	XP_017450366	(Get FASTA)	NCBI Sequence Viewer
	XP_038935231	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI61934	(Get FASTA)	NCBI Sequence Viewer
	EDL76519	(Get FASTA)	NCBI Sequence Viewer
	EDL76520	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001101574 ⟸ NM_001108104
- Peptide Label:	precursor
- UniProtKB:	B1WBY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGKKSSGRQSLLPLGLLVTVAAIHLVACPYTKVEESFNLQATHDLLYHQLDIDKYDHHEFPGV VPRTFLGPLLIAAFSSPVVYVLSLLEVSRFYSQLIVRGVLGLGVIFGLWTLQKAVRQQFGATVA VMFCWISATQFHLMFYCTRTLPNVLALAVVLPALTAWLQHRWAVFVWLSAFVIIGFRAELAMLL GIMLLLTLYQRRMSVARLLQHAIPAGILCLGLTVAVDSYFWRYLVWPEGVVLWYNTVLNKSSNW GTSPLLWYFYSALPRGLGCSLLFIPLGAVDRRTFALALPSLGFVALYSLLPHKELRFIIYTFPV LNIMAARGCTYVLNKKSWPYKVRALLVFGHVVVNVASTATSLYVSHFNYPGGVAMQRLHELVPP QTDVLVHIDVAAAQTGVSRFLQVNDDWRYDKREDVQLGAAGMLDYTHIIMEAVPGHLALYRDTH RVLARIEATTGVSLNLMKVPPFDVSLQTKLVLLERLLRPA hide sequence

RefSeq Acc Id:	XP_017450365 ⟸ XM_017594876
- Peptide Label:	isoform X1
- UniProtKB:	B1WBY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGKKSSGRQSLLPLGLLVTVAAIHLVACPYTKVEESFNLQATHDLLYHQLDIDKYDHHEFPGV VPRTFLGPLLIAAFSSPVVYVLSLLEVSRFYSQLIVRGVLGLGVIFGLWTLQKAVRQQFGATVA VMFCWISATQFHLMFYCTRTLPNVLALAVVLPALTAWLQHRWAVFVWLSAFVIIGFRAELAMLL GIMLLLTLYQRRMSVARLLQHAIPAGILCLGLTVAVDSYFWRYLVWPEGVVLWYNTVLNKSSNW GTSPLLWYFYSALPRGLGCSLLFIPLGAVDRRTFALALPSLGFVALYSLLPHKELRFIIYTFPV LNIMAARGCTYVLNKKSWPYKVRALLVFGHVVVNVASTATSLYVSHFNYPGGVAMQRLHELVPP QTDVLVHIDVAAAQTGVSRFLQVNDDWRYDKREDVQLGAAGMLDYTHIIMEAVPGHLALYRDTH RVLARIEATTGVSLNLMKVPPFDVSLQTKLVLLERLLRPA hide sequence

RefSeq Acc Id:	XP_017450363 ⟸ XM_017594874
- Peptide Label:	isoform X1
- UniProtKB:	B1WBY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGKKSSGRQSLLPLGLLVTVAAIHLVACPYTKVEESFNLQATHDLLYHQLDIDKYDHHEFPGV VPRTFLGPLLIAAFSSPVVYVLSLLEVSRFYSQLIVRGVLGLGVIFGLWTLQKAVRQQFGATVA VMFCWISATQFHLMFYCTRTLPNVLALAVVLPALTAWLQHRWAVFVWLSAFVIIGFRAELAMLL GIMLLLTLYQRRMSVARLLQHAIPAGILCLGLTVAVDSYFWRYLVWPEGVVLWYNTVLNKSSNW GTSPLLWYFYSALPRGLGCSLLFIPLGAVDRRTFALALPSLGFVALYSLLPHKELRFIIYTFPV LNIMAARGCTYVLNKKSWPYKVRALLVFGHVVVNVASTATSLYVSHFNYPGGVAMQRLHELVPP QTDVLVHIDVAAAQTGVSRFLQVNDDWRYDKREDVQLGAAGMLDYTHIIMEAVPGHLALYRDTH RVLARIEATTGVSLNLMKVPPFDVSLQTKLVLLERLLRPA hide sequence

RefSeq Acc Id:	XP_017450366 ⟸ XM_017594877
- Peptide Label:	isoform X1
- UniProtKB:	B1WBY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGKKSSGRQSLLPLGLLVTVAAIHLVACPYTKVEESFNLQATHDLLYHQLDIDKYDHHEFPGV VPRTFLGPLLIAAFSSPVVYVLSLLEVSRFYSQLIVRGVLGLGVIFGLWTLQKAVRQQFGATVA VMFCWISATQFHLMFYCTRTLPNVLALAVVLPALTAWLQHRWAVFVWLSAFVIIGFRAELAMLL GIMLLLTLYQRRMSVARLLQHAIPAGILCLGLTVAVDSYFWRYLVWPEGVVLWYNTVLNKSSNW GTSPLLWYFYSALPRGLGCSLLFIPLGAVDRRTFALALPSLGFVALYSLLPHKELRFIIYTFPV LNIMAARGCTYVLNKKSWPYKVRALLVFGHVVVNVASTATSLYVSHFNYPGGVAMQRLHELVPP QTDVLVHIDVAAAQTGVSRFLQVNDDWRYDKREDVQLGAAGMLDYTHIIMEAVPGHLALYRDTH RVLARIEATTGVSLNLMKVPPFDVSLQTKLVLLERLLRPA hide sequence

RefSeq Acc Id:	XP_017450364 ⟸ XM_017594875
- Peptide Label:	isoform X1
- UniProtKB:	B1WBY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGKKSSGRQSLLPLGLLVTVAAIHLVACPYTKVEESFNLQATHDLLYHQLDIDKYDHHEFPGV VPRTFLGPLLIAAFSSPVVYVLSLLEVSRFYSQLIVRGVLGLGVIFGLWTLQKAVRQQFGATVA VMFCWISATQFHLMFYCTRTLPNVLALAVVLPALTAWLQHRWAVFVWLSAFVIIGFRAELAMLL GIMLLLTLYQRRMSVARLLQHAIPAGILCLGLTVAVDSYFWRYLVWPEGVVLWYNTVLNKSSNW GTSPLLWYFYSALPRGLGCSLLFIPLGAVDRRTFALALPSLGFVALYSLLPHKELRFIIYTFPV LNIMAARGCTYVLNKKSWPYKVRALLVFGHVVVNVASTATSLYVSHFNYPGGVAMQRLHELVPP QTDVLVHIDVAAAQTGVSRFLQVNDDWRYDKREDVQLGAAGMLDYTHIIMEAVPGHLALYRDTH RVLARIEATTGVSLNLMKVPPFDVSLQTKLVLLERLLRPA hide sequence

RefSeq Acc Id:

ENSRNOP00000061731 ⟸ ENSRNOT00000065848

RefSeq Acc Id:	XP_038935231 ⟸ XM_039079303
- Peptide Label:	isoform X1
- UniProtKB:	B1WBY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000082244 ⟸ ENSRNOT00000096721

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B1WBY3-F1-model_v2	AlphaFold	B1WBY3	1-488	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695573

Promoter ID:

EPDNEW_R6098

Type:

single initiation site

Name:

Alg12_1

Description:

ALG12, alpha-1,6-mannosyltransferase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	129,812,412 - 129,812,472	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304826	AgrOrtholog
BioCyc Gene	G2FUF-32487	BioCyc
BioCyc Pathway	MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS [protein N-glycosylation initial phase (eukaryotic)]	BioCyc
Ensembl Genes	ENSRNOG00000004591	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000061731	ENTREZGENE
	ENSRNOP00000061731.1	UniProtKB/TrEMBL
	ENSRNOP00000082244.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065848	ENTREZGENE
	ENSRNOT00000065848.2	UniProtKB/TrEMBL
	ENSRNOT00000096721.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:9022144	IMAGE-MGC_LOAD
InterPro	Alg9_trans	UniProtKB/TrEMBL
KEGG Report	rno:315212	UniProtKB/TrEMBL
MGC_CLONE	MGC:187715	IMAGE-MGC_LOAD
NCBI Gene	315212	ENTREZGENE
PANTHER	Alg9_trans	UniProtKB/TrEMBL
	PTHR22760:SF1	UniProtKB/TrEMBL
Pfam	Glyco_transf_22	UniProtKB/TrEMBL
PhenoGen	Alg12	PhenoGen
UniProt	A0A8I5ZU43_RAT	UniProtKB/TrEMBL
	B1WBY3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-25	Alg12	ALG12, alpha-1,6-mannosyltransferase	Alg12	asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-16	Alg12	asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase	Alg12	asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-13	Alg12	asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase (S. cerevisiae)	Alg12	asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Alg12	asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)	Alg12_predicted	asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Alg12_predicted	asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

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Imported Annotations - KEGG (archival)