Plxnb2 (plexin B2) - Rat Genome Database

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Gene: Plxnb2 (plexin B2) Rattus norvegicus
Analyze
Symbol: Plxnb2
Name: plexin B2
RGD ID: 1305495
Description: Predicted to enable semaphorin receptor activity. Predicted to be involved in several processes, including nervous system development; positive regulation of cell projection organization; and regulation of protein metabolic process. Predicted to be part of semaphorin receptor complex. Predicted to be active in plasma membrane. Orthologous to human PLXNB2 (plexin B2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC315217; plexin-B2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27120,232,276 - 120,258,385 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,232,331 - 120,258,330 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7121,983,321 - 122,009,319 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07124,209,484 - 124,235,482 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07124,172,490 - 124,198,498 (-)NCBIRnor_WKY
Rnor_6.07130,135,484 - 130,161,568 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,135,464 - 130,151,880 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07129,821,099 - 129,847,380 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,457,133 - 127,483,162 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,492,148 - 127,508,267 (-)NCBI
Celera7116,706,163 - 116,732,180 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-colchicine  (ISO)
1,2-dimethylhydrazine  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
adenine  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
C60 fullerene  (EXP)
carbamazepine  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
cocaine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
diarsenic trioxide  (ISO)
dioxygen  (ISO)
disulfiram  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenamidone  (ISO)
fenthion  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
hypochlorous acid  (ISO)
isobutanol  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
N-ethyl-N-nitrosourea  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenytoin  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
Soman  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triclosan  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15330859   PMID:16122393   PMID:17554007   PMID:19581412   PMID:20458337   PMID:21966369   PMID:23376485   PMID:29100074   PMID:29981480  


Genomics

Comparative Map Data
Plxnb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27120,232,276 - 120,258,385 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,232,331 - 120,258,330 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7121,983,321 - 122,009,319 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07124,209,484 - 124,235,482 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07124,172,490 - 124,198,498 (-)NCBIRnor_WKY
Rnor_6.07130,135,484 - 130,161,568 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,135,464 - 130,151,880 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07129,821,099 - 129,847,380 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,457,133 - 127,483,162 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,492,148 - 127,508,267 (-)NCBI
Celera7116,706,163 - 116,732,180 (-)NCBICelera
Cytogenetic Map7q34NCBI
PLXNB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,274,979 - 50,307,646 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2250,274,979 - 50,307,646 (-)EnsemblGRCh38hg38GRCh38
GRCh372250,713,408 - 50,746,075 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,055,535 - 49,086,830 (-)NCBINCBI36Build 36hg18NCBI36
Celera2234,588,312 - 34,609,097 (-)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,610,818 - 33,631,643 (-)NCBIHuRef
CHM1_12250,672,148 - 50,704,747 (-)NCBICHM1_1
T2T-CHM13v2.02250,781,981 - 50,815,405 (-)NCBIT2T-CHM13v2.0
Plxnb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,039,749 - 89,065,384 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,039,752 - 89,064,991 (-)EnsemblGRCm39 Ensembl
GRCm381589,155,546 - 89,182,018 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,155,549 - 89,180,788 (-)EnsemblGRCm38mm10GRCm38
MGSCv371588,985,979 - 89,011,218 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361588,983,312 - 89,008,554 (-)NCBIMGSCv36mm8
Celera1591,284,651 - 91,309,986 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.68NCBI
Plxnb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,298,317 - 33,309,961 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541333,297,617 - 33,314,371 (-)NCBIChiLan1.0ChiLan1.0
PLXNB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12249,502,117 - 49,527,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,502,489 - 49,517,613 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02230,503,884 - 30,537,082 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PLXNB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,949,230 - 16,975,109 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1016,963,396 - 16,974,705 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1016,928,363 - 16,953,552 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,677,119 - 17,702,321 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1017,677,067 - 17,702,319 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,401,245 - 17,426,434 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,724,556 - 17,749,721 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,856,713 - 17,881,895 (+)NCBIUU_Cfam_GSD_1.0
Plxnb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945522,686 - 539,474 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936629521,981 - 539,475 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLXNB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5403,765 - 416,798 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15390,347 - 416,805 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PLXNB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,764,329 - 32,797,223 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1932,764,272 - 32,784,566 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604592,557,436 - 92,590,397 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plxnb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752469,973 - 498,729 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752473,451 - 498,555 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plxnb2
155 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:85
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000010467
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1582240Sffal1Serum free fatty acids level QTL 13.40.0021blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)7116677010124049952Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)7116677189127103496Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat

Markers in Region
D7Rat197  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27120,240,322 - 120,240,550 (+)MAPPERmRatBN7.2
Rnor_6.07130,143,531 - 130,143,758NCBIRnor6.0
Rnor_5.07129,829,146 - 129,829,373UniSTSRnor5.0
RGSC_v3.47127,465,179 - 127,465,407RGDRGSC3.4
RGSC_v3.47127,465,180 - 127,465,407UniSTSRGSC3.4
RGSC_v3.17127,499,409 - 127,499,637RGD
Celera7116,714,209 - 116,714,436UniSTS
SHRSP x BN Map770.3499RGD
SHRSP x BN Map770.3499UniSTS
Cytogenetic Map7q34UniSTS
BB195788  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27120,259,549 - 120,259,687 (+)MAPPERmRatBN7.2
Rnor_6.07130,162,753 - 130,162,890NCBIRnor6.0
Rnor_5.07129,848,584 - 129,848,721UniSTSRnor5.0
RGSC_v3.47127,484,402 - 127,484,539UniSTSRGSC3.4
Celera7116,733,417 - 116,733,554UniSTS
Cytogenetic Map7q34UniSTS
RH138860  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27120,259,619 - 120,259,764 (+)MAPPERmRatBN7.2
Rnor_6.07130,162,823 - 130,162,967NCBIRnor6.0
Rnor_5.07129,848,654 - 129,848,798UniSTSRnor5.0
RGSC_v3.47127,484,472 - 127,484,616UniSTSRGSC3.4
Celera7116,733,487 - 116,733,631UniSTS
RH 3.4 Map7958.3UniSTS
Cytogenetic Map7q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 37 51 41 13 41 1 4 74 35 41 11 1
Low 6 6 6 7 7 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000010467   ⟹   ENSRNOP00000010467
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7120,232,331 - 120,258,330 (-)Ensembl
Rnor_6.0 Ensembl7130,135,484 - 130,151,414 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088623   ⟹   ENSRNOP00000072434
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7120,232,331 - 120,258,330 (-)Ensembl
Rnor_6.0 Ensembl7130,135,464 - 130,151,880 (-)Ensembl
RefSeq Acc Id: NM_001108106   ⟹   NP_001101576
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27120,232,276 - 120,258,310 (-)NCBI
Rnor_6.07130,135,484 - 130,161,513 (-)NCBI
Rnor_5.07129,821,099 - 129,847,380 (-)NCBI
RGSC_v3.47127,457,133 - 127,483,162 (-)RGD
Celera7116,706,163 - 116,732,180 (-)RGD
Sequence:
RefSeq Acc Id: XM_006242202   ⟹   XP_006242264
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27120,232,331 - 120,258,294 (-)NCBI
Rnor_6.07130,135,539 - 130,161,568 (-)NCBI
Rnor_5.07129,821,099 - 129,847,380 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006242207   ⟹   XP_006242269
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27120,232,331 - 120,258,294 (-)NCBI
Rnor_6.07130,135,539 - 130,161,568 (-)NCBI
Rnor_5.07129,821,099 - 129,847,380 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765727   ⟹   XP_008763949
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27120,232,331 - 120,248,679 (-)NCBI
Rnor_6.07130,135,539 - 130,161,568 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765729   ⟹   XP_008763951
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27120,232,331 - 120,258,360 (-)NCBI
Rnor_6.07130,135,539 - 130,161,568 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079305   ⟹   XP_038935233
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27120,232,331 - 120,258,385 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001101576   ⟸   NM_001108106
- Peptide Label: precursor
- UniProtKB: D3ZQ57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242264   ⟸   XM_006242202
- Peptide Label: isoform X1
- UniProtKB: D3ZQ57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242269   ⟸   XM_006242207
- Peptide Label: isoform X1
- UniProtKB: D3ZQ57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763951   ⟸   XM_008765729
- Peptide Label: isoform X1
- UniProtKB: D3ZQ57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763949   ⟸   XM_008765727
- Peptide Label: isoform X1
- UniProtKB: D3ZQ57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000010467   ⟸   ENSRNOT00000010467
RefSeq Acc Id: ENSRNOP00000072434   ⟸   ENSRNOT00000088623
RefSeq Acc Id: XP_038935233   ⟸   XM_039079305
- Peptide Label: isoform X1
- UniProtKB: D3ZQ57 (UniProtKB/TrEMBL)
Protein Domains
Sema

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZQ57-F1-model_v2 AlphaFold D3ZQ57 1-1841 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305495 AgrOrtholog
BioCyc Gene G2FUF-32457 BioCyc
Ensembl Genes ENSRNOG00000007133 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000010467.6 UniProtKB/TrEMBL
  ENSRNOP00000072434 ENTREZGENE
  ENSRNOP00000072434.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010467.7 UniProtKB/TrEMBL
  ENSRNOT00000088623 ENTREZGENE
  ENSRNOT00000088623.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.506.10 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  IPT_TIG_rcpt UniProtKB/TrEMBL
  Plexin UniProtKB/TrEMBL
  Plexin-like_fold UniProtKB/TrEMBL
  Plexin_cytoplasmic_RasGAP_dom UniProtKB/TrEMBL
  Plexin_repeat UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/TrEMBL
  Semaphorin/CD100_Ag UniProtKB/TrEMBL
  TIG1_plexin UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
KEGG Report rno:315217 UniProtKB/TrEMBL
NCBI Gene 315217 ENTREZGENE
PANTHER PTHR22625 UniProtKB/TrEMBL
Pfam Plexin_cytopl UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
  TIG UniProtKB/TrEMBL
  TIG_plexin UniProtKB/TrEMBL
PhenoGen Plxnb2 PhenoGen
PROSITE SEMA UniProtKB/TrEMBL
SMART IPT UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
Superfamily-SCOP Ig_E-set UniProtKB/TrEMBL
  Rho_GAP UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
UniProt A0A0G2K2Y9_RAT UniProtKB/TrEMBL
  D3ZQ57 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Plxnb2  plexin B2  Plxnb2_predicted  plexin B2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Plxnb2_predicted  plexin B2 (predicted)      Symbol and Name status set to approved 70820 APPROVED