Sp7 (Sp7 transcription factor) - Rat Genome Database

Name: Sp7
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Sp7 (Sp7 transcription factor) Rattus norvegicus

Analyze

Symbol:

Sp7

Name:

Sp7 transcription factor

RGD ID:

631377

Description:

Predicted to have DEAD/H-box RNA helicase binding activity; DNA-binding transcription activator activity, RNA polymerase II-specific; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including hematopoietic stem cell differentiation; osteoblast differentiation; and positive regulation of stem cell differentiation. Predicted to localize to cytoplasm and nuclear chromatin. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 12. Orthologous to human SP7 (Sp7 transcription factor); INTERACTS WITH 5-formyltetrahydrofolic acid; ammonium chloride; arsenous acid.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

osterix; Osx; Transcription factor Sp7

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SP7 (Sp7 transcription factor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, PhylomeDB, Treefam
Mus musculus (house mouse):	Sp7 (Sp7 transcription factor 7)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Sp7 (Sp7 transcription factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SP7 (Sp7 transcription factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SP7 (Sp7 transcription factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sp7 (Sp7 transcription factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SP7 (Sp7 transcription factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	SP7 (Sp7 transcription factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sp7 (Sp7 transcription factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SP7 (Sp7 transcription factor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Sp7 (Sp7 transcription factor 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	sp7 (Sp7 transcription factor)	Alliance	DIOPT (PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	Sp1	Alliance	DIOPT (Hieranoid\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	133,484,609 - 133,494,788 (-)	NCBI
Rnor_6.0 Ensembl	7	143,958,858 - 143,967,484 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	7	143,957,316 - 143,967,488 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	7	141,753,826 - 141,762,790 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	141,109,771 - 141,118,397 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	7	141,186,207 - 141,194,213 (-)	NCBI
Celera	7	129,919,226 - 129,927,844 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

osteogenesis imperfecta (ISO)

osteogenesis imperfecta type 12 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

5-azacytidine (ISO)

5-formyltetrahydrofolic acid (EXP)

Actein (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

allethrin (ISO)

aluminium oxide (ISO)

ammonium chloride (EXP)

Anacardic acid (ISO)

anthra[1,9-cd]pyrazol-6(2H)-one (ISO)

arsenous acid (EXP)

aucubin (ISO)

benzo[a]pyrene (ISO)

berberine (ISO)

bexarotene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

calciol (ISO)

CHIR 99021 (ISO)

chromium(3+) trichloride (ISO)

cobalt dichloride (EXP,ISO)

D-glucose (ISO)

desferrioxamine B (ISO)

dexamethasone (EXP,ISO)

diarsenic trioxide (EXP)

disodium selenite (ISO)

ethyl 3,4-dihydroxybenzoate (ISO)

fentin hydroxide (ISO)

folic acid (ISO)

fulvestrant (EXP,ISO)

gamma-aminobutyric acid (EXP)

gamma-Oryzanol (TN) (EXP)

genistein (ISO)

Ginkgoic acid (ISO)

glucose (ISO)

glycerol 2-phosphate (ISO)

glycyrrhetinate (ISO)

glycyrrhetinic acid (ISO)

hydrogen chloride (ISO)

hydrogen peroxide (ISO)

ionomycin (ISO)

isonicotinamide (ISO)

L-ascorbic acid (ISO)

L-ascorbic acid 2-phosphate (ISO)

lead diacetate (ISO)

lead(0) (ISO)

lead(2+) (ISO)

menaquinone (EXP)

methotrexate (EXP)

mono(2-ethylhexyl) phthalate (ISO)

naringin (EXP,ISO)

notoginsenoside R1 (ISO)

pioglitazone (ISO)

prallethrin (ISO)

quinoxyfen (ISO)

resveratrol (ISO)

Salidroside (ISO)

SB 203580 (EXP)

simvastatin (ISO)

sodium fluoride (EXP,ISO)

tacrolimus hydrate (EXP)

Tanshinone I (ISO)

titanium dioxide (ISO)

tributylstannane (ISO)

triphenyl phosphate (ISO)

triphenylstannane (ISO)

tungsten (ISO)

valproic acid (ISO)

warfarin (ISO)

zinc atom (EXP)

zinc(0) (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

hematopoietic stem cell differentiation (ISO)

osteoblast differentiation (ISO)

positive regulation of stem cell differentiation (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of transcription by RNA polymerase II (IBA,ISO)

Cellular Component

chromatin (IBA)

cytoplasm (ISO)

nucleus (ISO)

Molecular Function

DEAD/H-box RNA helicase binding (ISO)

DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	MGD data from the GO Consortium
3.	Nakashima K, etal., Cell 2002 Jan 11;108(1):17-29.
4.	OMIM Disease Annotation Pipeline
5.	RGD automated data pipeline
6.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14604442	PMID:16041384	PMID:16610234	PMID:17303075	PMID:18270471	PMID:18272339	PMID:18471237	PMID:18932205	PMID:19124839	PMID:19822991	PMID:21806466	PMID:22009963
PMID:22886301	PMID:23354182	PMID:25823394	PMID:26253417	PMID:26617945	PMID:28107808	PMID:30026585	PMID:33187585

Genomics

Comparative Map Data

Sp7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	133,484,609 - 133,494,788 (-)	NCBI
Rnor_6.0 Ensembl	7	143,958,858 - 143,967,484 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	7	143,957,316 - 143,967,488 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	7	141,753,826 - 141,762,790 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	141,109,771 - 141,118,397 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	7	141,186,207 - 141,194,213 (-)	NCBI
Celera	7	129,919,226 - 129,927,844 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

SP7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	12	53,326,575 - 53,345,315 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	12	53,326,575 - 53,344,793 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	12	53,720,359 - 53,738,577 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	12	53,720,359 - 53,730,167 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	52,006,626 - 52,015,804 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	12	52,006,628 - 52,015,804	NCBI
Celera	12	53,369,632 - 53,379,307 (-)	NCBI
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	50,761,885 - 50,771,562 (-)	NCBI		HuRef
CHM1_1	12	53,687,545 - 53,705,774 (-)	NCBI		CHM1_1

Sp7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	102,265,038 - 102,275,498 (-)	NCBI	GRCm39		mm39
GRCm38	15	102,356,603 - 102,367,035 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	102,356,606 - 102,367,182 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	102,187,608 - 102,196,702 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	15	102,184,644 - 102,194,367 (-)	NCBI			mm8
Celera	15	104,514,244 - 104,523,282 (-)	NCBI		Celera
Cytogenetic Map	15	F3	NCBI

Sp7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	583,981 - 602,856 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	583,981 - 602,856 (-)	NCBI	ChiLan1.0	ChiLan1.0

SP7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	36,191,091 - 36,209,494 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	36,199,673 - 36,209,494 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	35,409,055 - 35,427,871 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

SP7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	27	1,880,424 - 1,887,679 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	27	1,878,612 - 1,887,063 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Sp7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936512	10,610,542 - 10,613,335 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SP7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	18,540,952 - 18,575,436 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	18,541,368 - 18,566,668 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	18,978,684 - 19,002,387 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SP7
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	49,436,976 - 49,456,741 (-)	NCBI

Sp7
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624904	1,436,390 - 1,444,996 (-)	NCBI

Position Markers

D7Mit1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	7	143,965,415 - 143,965,591	NCBI	Rnor6.0
Rnor_5.0	7	141,760,721 - 141,760,897	UniSTS	Rnor5.0
RGSC_v3.4	7	141,116,327 - 141,116,504	RGD	RGSC3.4
RGSC_v3.4	7	141,116,328 - 141,116,504	UniSTS	RGSC3.4
RGSC_v3.1	7	141,192,765 - 141,192,941	RGD
Celera	7	129,925,775 - 129,925,951	UniSTS
RH 3.4 Map	7	1065.7	UniSTS
RH 3.4 Map	7	1065.7	RGD
RH 2.0 Map	7	799.2	RGD
Cytogenetic Map	7	q36	UniSTS

PMC151001P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	7	143,959,094 - 143,959,291	NCBI	Rnor6.0
Rnor_5.0	7	141,754,402 - 141,754,599	UniSTS	Rnor5.0
RGSC_v3.4	7	141,110,007 - 141,110,204	UniSTS	RGSC3.4
Celera	7	129,919,462 - 129,919,659	UniSTS
Cytogenetic Map	7	q36	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	71448715	145729302	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	111519266	143965591	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	121986439	143965591	Rat
631663	Bw6	Body weight QTL 6	3.4		body mass (VT:0001259)	body weight (CMO:0000012)	7	120746024	145692398	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	129412003	145729302	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	115922628	145729302	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	114825174	145729302	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	106564316	145729302	Rat
1357339	Stl14	Serum triglyceride level QTL 14	3.45	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	122421276	143965415	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	121654760	145729302	Rat
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	51251919	145729302	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	100028953	145729302	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	100192194	145192194	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	91832949	145158140	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	91832949	145158140	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	103
Count of miRNA genes:	77
Interacting mature miRNAs:	82
Transcripts:	ENSRNOT00000018828
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium
Low									46	10	12
Below cutoff	1	6	10	9	3	9	1	2	28	12	19	2	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_181374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC097309	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY177399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BK001412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BK001413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000018828 ⟹ ENSRNOP00000018828

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	143,958,858 - 143,966,863 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081758 ⟹ ENSRNOP00000074457

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	143,958,858 - 143,967,484 (-)	Ensembl

RefSeq Acc Id:

NM_001037632 ⟹ NP_001032721

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,486,151 - 133,494,777 (-)	NCBI
Rnor_6.0	7	143,958,858 - 143,967,484 (-)	NCBI
Rnor_5.0	7	141,753,826 - 141,762,790 (-)	NCBI
RGSC_v3.4	7	141,109,771 - 141,118,397 (-)	RGD
Celera	7	129,919,226 - 129,927,844 (-)	RGD

Sequence:

show sequence

AGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCTGCCGCG
CCACTGAGTAGCGGCAAGGACTCCGAGTCAAGAGTCGGATTCTAGGATTGGATCTGAGTGAGCC
GGCCTGAGAGAGGAGAAGATCCCTCCCAGCGCCCTCGGGCCACCCATTGCCAGTAATCTTCGTG
CCAGACCTCTTGAGAGGAGACGGGACAGCCAACCCTAGCCTCCCCAGGAAGAAGCTCACTATGG
CTCCAGTCCCCTGGCCATGCTGACAGCAGCCTGCAGCAAGTTTGGTGGCTCCAGCCCTCTGCGA
GACTCAACAGCCCTGGGAAAAGGAGGCACAAAGAAGCCATACACTGACCTTTCAGCCCCCAAAA
CCATGGGGGACGCCTACCCAGCTCCCTTCTCAAGCACCAATGGACTCCTCTCCCCTGCAGGCAG
TCCCCCGGCCCCGGCCTCTGGCTATGCCAATGACTACCCACCCTTTCCCCACTCATTTCCTGGG
CCCACTGGTGCCCAAGACCCGGGGCTGCTGGTGCCGAAGGGGCACAGCTCTTCTGACTGCCTGC
CTAGTGTCTACACGTCCTTGGATATGTCCCATCCCTACGGCTCCTGGTACAAGGCGGGCATCCA
TGCAGGCATCTCACCAGGTCCTGGCAACACTCCTACCCCTTGGTGGGACATGCACCCTGGGGGC
AATTGGTTAGGTGGTGGGCAGGGCCAGGGTGATGGGCTGCAAGGGACACTGTCCACAGGCCCTG
CCCAGCCTCCACTGAACCCCCAGCTGCCTACTTACCCGTCTGACTTTGCCCCCCTTAACCCAGC
TCCCTATCCAGCACCCCACCTCTTGCAACCAGGTCCCCAGCATGTCCTACCCCAAGATGTCTAT
AAGCCCAAGGCAGTTGGCAATAGTGGGCAACTGGAGGGGAGTGGTGCAGGCAAACCTCCCCGGG
GTGCAGGCACAGGGGGCAGTGGTGGATATGCAGGCAGTGGGGCAGGGCGTTCTACCTGCGACTG
CCCCAACTGTCAGGAGCTAGAGCGGCTGGGGGCAGCAGCGGCTGGGCTGAGGAAGAAGCCCATT
CACAGCTGCCACATCCCCGGCTGCGGCAAGGTGTACGGCAAGGCTTCGCATCTGAAAGCCCACT
TGCGCTGGCACACTGGCGAGAGGCCTTTCGTCTGCAACTGGCTTTTCTGTGGCAAGAGGTTCAC
CCGCTCTGACGAGCTGGAGCGCCACGTGCGCACTCACACCCGGGAGAAGAAGTTCACCTGTCTG
CTCTGCTCCAAGCGCTTTACCCGAAGCGACCACTTGAGCAAACATCAGCGCACCCACGGGGAGC
CAGGTCCCGGGCCGCCCCCAAGTGGCCCTAAGGAGCTGGGGGAGGGTCGCAGCGTCGGGGAAGA
AGAAGCCAATCAGCCGCCCCGATCTTCCACCTCGCCTGCACCCCCAGAAAAAGCCCCTGGAGGC
AGCCCAGAGCAGAGCAACCTGCTAGAGATCTGA

hide sequence

RefSeq Acc Id:

NM_181374 ⟹ NP_852039

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,486,151 - 133,494,156 (-)	NCBI
Rnor_6.0	7	143,958,858 - 143,966,863 (-)	NCBI
Rnor_5.0	7	141,753,826 - 141,762,790 (-)	NCBI
RGSC_v3.4	7	141,109,771 - 141,118,397 (-)	RGD
Celera	7	129,919,226 - 129,927,223 (-)	NCBI

Sequence:

show sequence

ATTCTCCCATTCTCCCTCCCTCTCCCTTTCCCCTCTCCCACTGGCTCCTGGTTCTCTCCATCTG
CCTGACTCCTTGGGACCCGGTCCCCAGCCTGAGGATGGCGTCCTCTCTGCTTGAGGAAGAAGCT
CACTATGGCTCCAGTCCCCTGGCCATGCTGACAGCAGCCTGCAGCAAGTTTGGTGGCTCCAGCC
CTCTGCGAGACTCAACAGCCCTGGGAAAAGGAGGCACAAAGAAGCCATACACTGACCTTTCAGC
CCCCAAAACCATGGGGGACGCCTACCCAGCTCCCTTCTCAAGCACCAATGGACTCCTCTCCCCT
GCAGGCAGTCCCCCGGCCCCGGCCTCTGGCTATGCCAATGACTACCCACCCTTTCCCCACTCAT
TTCCTGGGCCCACTGGTGCCCAAGACCCGGGGCTGCTGGTGCCGAAGGGGCACAGCTCTTCTGA
CTGCCTGCCTAGTGTCTACACGTCCTTGGATATGTCCCATCCCTACGGCTCCTGGTACAAGGCG
GGCATCCATGCAGGCATCTCACCAGGTCCTGGCAACACTCCTACCCCTTGGTGGGACATGCACC
CTGGGGGCAATTGGTTAGGTGGTGGGCAGGGCCAGGGTGATGGGCTGCAAGGGACACTGTCCAC
AGGCCCTGCCCAGCCTCCACTGAACCCCCAGCTGCCTACTTACCCGTCTGACTTTGCCCCCCTT
AACCCAGCTCCCTATCCAGCACCCCACCTCTTGCAACCAGGTCCCCAGCATGTCCTACCCCAAG
ATGTCTATAAGCCCAAGGCAGTTGGCAATAGTGGGCAACTGGAGGGGAGTGGTGCAGGCAAACC
TCCCCGGGGTGCAGGCACAGGGGGCAGTGGTGGATATGCAGGCAGTGGGGCAGGGCGTTCTACC
TGCGACTGCCCCAACTGTCAGGAGCTAGAGCGGCTGGGGGCAGCAGCGGCTGGGCTGAGGAAGA
AGCCCATTCACAGCTGCCACATCCCCGGCTGCGGCAAGGTGTACGGCAAGGCTTCGCATCTGAA
AGCCCACTTGCGCTGGCACACTGGCGAGAGGCCTTTCGTCTGCAACTGGCTTTTCTGTGGCAAG
AGGTTCACCCGCTCTGACGAGCTGGAGCGCCACGTGCGCACTCACACCCGGGAGAAGAAGTTCA
CCTGTCTGCTCTGCTCCAAGCGCTTTACCCGAAGCGACCACTTGAGCAAACATCAGCGCACCCA
CGGGGAGCCAGGTCCCGGGCCGCCCCCAAGTGGCCCTAAGGAGCTGGGGGAGGGTCGCAGCGTC
GGGGAAGAAGAAGCCAATCAGCCGCCCCGATCTTCCACCTCGCCTGCACCCCCAGAAAAAGCCC
CTGGAGGCAGCCCAGAGCAGAGCAACCTGCTAGAGATCTGA

hide sequence

RefSeq Acc Id:

XM_006242390 ⟹ XP_006242452

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	143,957,316 - 143,961,345 (-)	NCBI
Rnor_5.0	7	141,753,826 - 141,762,790 (-)	NCBI

Sequence:

show sequence

TGGGACTAAAGATGTGTGCGGTCACTGACCAGCTACCTCTGTGTTTCTAACCACCCCCCTCCAT
CCCACTTTCATGTTTTACTTCATTCACAGCACTTGAATGGTGAGGTGCAGACCAATCCCATGTA
CTACACCTTGGGGGACACTGAAGCTGTGTCTAGGGTCTTAGCTCCCTGTCTCAGAGCGTCCTGA
GGACTTTGTAGTCTCTCACTGCTCAAAGGGACGCTAGCTGGTGATGCCCAGCCACTGCTTAAAA
GACATTTCTTGCTTCACCACAACCCAGGCTTGGCTGAGGCCCTGTTCCCTCTCAATGTCCCAGT
GTCTCCGCTGTCCCTTCCTCTACCTTCCCGGGTCCAGAGTGCACGCCAAGAGATTCTTCACTAG
GGACATGTGGATCTGACCTCAGGGAGATGGGGAGACAGTGGCTCCTTAGTCAGGAGCTGAAACA
GAGACCGGAAATAGAATTGAGGTGAAGACAGGAAAATCTGGAATGGGGTAGGATGTCCCAACAC
CGTTGCTTCTCTCTGTGCCCCCCACACTGCTTTCCCTGGAGAAGGAAGAAGCTCACTATGGCTC
CAGTCCCCTGGCCATGCTGACAGCAGCCTGCAGCAAGTTTGGTGGCTCCAGCCCTCTGCGAGAC
TCAACAGCCCTGGGAAAAGGAGGCACAAAGAAGCCATACACTGACCTTTCAGCCCCCAAAACCA
TGGGGGACGCCTACCCAGCTCCCTTCTCAAGCACCAATGGACTCCTCTCCCCTGCAGGCAGTCC
CCCGGCCCCGGCCTCTGGCTATGCCAATGACTACCCACCCTTTCCCCACTCATTTCCTGGGCCC
ACTGGTGCCCAAGACCCGGGGCTGCTGGTGCCGAAGGGGCACAGCTCTTCTGACTGCCTGCCTA
GTGTCTACACGTCCTTGGATATGTCCCATCCCTACGGCTCCTGGTACAAGGCGGGCATCCATGC
AGGCATCTCACCAGGTCCTGGCAACACTCCTACCCCTTGGTGGGACATGCACCCTGGGGGCAAT
TGGTTAGGTGGTGGGCAGGGCCAGGGTGATGGGCTGCAAGGGACACTGTCCACAGGCCCTGCCC
AGCCTCCACTGAACCCCCAGCTGCCTACTTACCCGTCTGACTTTGCCCCCCTTAACCCAGCTCC
CTATCCAGCACCCCACCTCTTGCAACCAGGTCCCCAGCATGTCCTACCCCAAGATGTCTATAAG
CCCAAGGCAGTTGGCAATAGTGGGCAACTGGAGGGGAGTGGTGCAGGCAAACCTCCCCGGGGTG
CAGGCACAGGGGGCAGTGGTGGATATGCAGGCAGTGGGGCAGGGCGTTCTACCTGCGACTGCCC
CAACTGTCAGGAGCTAGAGCGGCTGGGGGCAGCAGCGGCTGGGCTGAGGAAGAAGCCCATTCAC
AGCTGCCACATCCCCGGCTGCGGCAAGGTGTACGGCAAGGCTTCGCATCTGAAAGCCCACTTGC
GCTGGCACACTGGCGAGAGGCCTTTCGTCTGCAACTGGCTTTTCTGTGGCAAGAGGTTCACCCG
CTCTGACGAGCTGGAGCGCCACGTGCGCACTCACACCCGGGAGAAGAAGTTCACCTGTCTGCTC
TGCTCCAAGCGCTTTACCCGAAGCGACCACTTGAGCAAACATCAGCGCACCCACGGGGAGCCAG
GTCCCGGGCCGCCCCCAAGTGGCCCTAAGGAGCTGGGGGAGGGTCGCAGCGTCGGGGAAGAAGA
AGCCAATCAGCCGCCCCGATCTTCCACCTCGCCTGCACCCCCAGAAAAAGCCCCTGGAGGCAGC
CCAGAGCAGAGCAACCTGCTAGAGATCTGAGCTGGGCAGAGGAAGATCTCCAGCTCCAGGGTCC
TCTTGTCCCTCGCTCTCTCCTATGCATGCCATGCCATACTCTGGGGGATCTCTCTCTGATCCCT
TAGGCTTTCTCTTTGCATGTCTCCTCACTCTTCTGTCTTAGCCAAATTCCTCTCAGGCCTTTGC
CCGTGCCTAGTTCCCATGCTCTGACCTCCTGAACTCTTTCTTCGCTGCCCCTGTTCTTCACAGC
TTCCATCTGGCCGCACATCATTTTCTCATTAATTCTTTGCCATTCAATCTTTCTGCTTCCCAAC
CCTATTTGCCACTTTCCCGGAAGCTTCCAGGCTGTCGCCCCGATTCCCCCCCCCCCGCTTTCCA
TTCTCTTGAGCTTTTTTAAAACAAACACGATGATGATGATGATGATGATGATGATGATGATGAT
AATTTATTGCCCCCTTGGTGGTTCTTCATTAGGAACCAGAGTTAAGGAGATTGGTGTTAGTAAC
CTGGCTGCGAGCAGAGTGCCAAGAAAGGGGAAGCCCAATGGGGATCTGATCCCAAAGATGGGGT
GACCCCAAGGTCAGGGAGGCTGTCCCCCAGCCTTGAGTACTTAGCCCCTGTGCGCCAGGAGTAA
AGAATAATAATAATAATAATTCTATTTATCTAAGTTATGATGACGGGTCAGGTACAGTGAGCTG
GAGAGGGAAAGGGAATCTTTTTTTTTTTTTTTTTTTGTGCTAAGGGTATTCTAGACAAATGCAT
CTGTGTATAGATAGACAAATGATAGTGGAGACCTTCGTAGATTTCTATCATCGAGGTCTCTGAG
TTTCTTTTTCAGCGGAGTTTTGGGTTGTTAGGCCTCTTTTAGTTTATGTGGGTGTCTCTCTGTG
AGGCAGTCACTAAGATCTCAAGCCCCAGCCAGAAGCTGTGAAACTTCAAGTCCTATGGAGGGGA
GGACTGGAATGTACCCCAGCTCTCTTGACCACAGAGCAGGTTCTTCAACTGACCCTCTTCTCAT
ACCCTGTGACCTCATCAGGCTATTCCCTTGTTGTCATGGTTATGGAGAGCTTGCAGCTGCCATC
TTAAACGAGTTCTTTGGAGAGCCCATCTAACAGGAGGATTTTGGTTTGGAGGTGCCCCTCCTGA
AAAAGTAGGTGGGCAAAGGCTTTCTCTGGGATCAAATTCAAATAAACCAAGTATTTATTGAGTG
CTTACTATGTGCAAGGCCTGGTGCCTAGAAGCCATGAGAAAGAATTTATAACAGGACAGAGGTC
CCTAAACTATAAACATCCACAGTCCCCCAATCTAGGAGGTTCCACTCCACTCCAGTGACTTTTA
AAACCGCTTGTGCCTTTGAATGCCTTTCCTGAAACTTTTGGATCTTCCTGTTCTGTCCCCTGCT
CCTTCTAGGCCCCAAGACAAAGGGTAAAGCCAGTGGAGTCTGGGAAGGGCATATAACACCGTTG
AAGGGATCATCCCTTTGTGGAATCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTTTAATTTAATAAATAAAAGTTCGATTTGAAA

hide sequence

RefSeq Acc Id:

XM_008765706 ⟹ XP_008763928

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	143,957,316 - 143,967,220 (-)	NCBI

Sequence:

show sequence

GACTGCCCACAGCTGTCTATTGGATTTTTGGGCCTGAGGATGGCGTCCTCTCTGCTTGAGGAAG
AAGCTCACTATGGCTCCAGTCCCCTGGCCATGCTGACAGCAGCCTGCAGCAAGTTTGGTGGCTC
CAGCCCTCTGCGAGACTCAACAGCCCTGGGAAAAGGAGGCACAAAGAAGCCATACACTGACCTT
TCAGCCCCCAAAACCATGGGGGACGCCTACCCAGCTCCCTTCTCAAGCACCAATGGACTCCTCT
CCCCTGCAGGCAGTCCCCCGGCCCCGGCCTCTGGCTATGCCAATGACTACCCACCCTTTCCCCA
CTCATTTCCTGGGCCCACTGGTGCCCAAGACCCGGGGCTGCTGGTGCCGAAGGGGCACAGCTCT
TCTGACTGCCTGCCTAGTGTCTACACGTCCTTGGATATGTCCCATCCCTACGGCTCCTGGTACA
AGGCGGGCATCCATGCAGGCATCTCACCAGGTCCTGGCAACACTCCTACCCCTTGGTGGGACAT
GCACCCTGGGGGCAATTGGTTAGGTGGTGGGCAGGGCCAGGGTGATGGGCTGCAAGGGACACTG
TCCACAGGCCCTGCCCAGCCTCCACTGAACCCCCAGCTGCCTACTTACCCGTCTGACTTTGCCC
CCCTTAACCCAGCTCCCTATCCAGCACCCCACCTCTTGCAACCAGGTCCCCAGCATGTCCTACC
CCAAGATGTCTATAAGCCCAAGGCAGTTGGCAATAGTGGGCAACTGGAGGGGAGTGGTGCAGGC
AAACCTCCCCGGGGTGCAGGCACAGGGGGCAGTGGTGGATATGCAGGCAGTGGGGCAGGGCGTT
CTACCTGCGACTGCCCCAACTGTCAGGAGCTAGAGCGGCTGGGGGCAGCAGCGGCTGGGCTGAG
GAAGAAGCCCATTCACAGCTGCCACATCCCCGGCTGCGGCAAGGTGTACGGCAAGGCTTCGCAT
CTGAAAGCCCACTTGCGCTGGCACACTGGCGAGAGGCCTTTCGTCTGCAACTGGCTTTTCTGTG
GCAAGAGGTTCACCCGCTCTGACGAGCTGGAGCGCCACGTGCGCACTCACACCCGGGAGAAGAA
GTTCACCTGTCTGCTCTGCTCCAAGCGCTTTACCCGAAGCGACCACTTGAGCAAACATCAGCGC
ACCCACGGGGAGCCAGGTCCCGGGCCGCCCCCAAGTGGCCCTAAGGAGCTGGGGGAGGGTCGCA
GCGTCGGGGAAGAAGAAGCCAATCAGCCGCCCCGATCTTCCACCTCGCCTGCACCCCCAGAAAA
AGCCCCTGGAGGCAGCCCAGAGCAGAGCAACCTGCTAGAGATCTGAGCTGGGCAGAGGAAGATC
TCCAGCTCCAGGGTCCTCTTGTCCCTCGCTCTCTCCTATGCATGCCATGCCATACTCTGGGGGA
TCTCTCTCTGATCCCTTAGGCTTTCTCTTTGCATGTCTCCTCACTCTTCTGTCTTAGCCAAATT
CCTCTCAGGCCTTTGCCCGTGCCTAGTTCCCATGCTCTGACCTCCTGAACTCTTTCTTCGCTGC
CCCTGTTCTTCACAGCTTCCATCTGGCCGCACATCATTTTCTCATTAATTCTTTGCCATTCAAT
CTTTCTGCTTCCCAACCCTATTTGCCACTTTCCCGGAAGCTTCCAGGCTGTCGCCCCGATTCCC
CCCCCCCCGCTTTCCATTCTCTTGAGCTTTTTTAAAACAAACACGATGATGATGATGATGATGA
TGATGATGATGATGATAATTTATTGCCCCCTTGGTGGTTCTTCATTAGGAACCAGAGTTAAGGA
GATTGGTGTTAGTAACCTGGCTGCGAGCAGAGTGCCAAGAAAGGGGAAGCCCAATGGGGATCTG
ATCCCAAAGATGGGGTGACCCCAAGGTCAGGGAGGCTGTCCCCCAGCCTTGAGTACTTAGCCCC
TGTGCGCCAGGAGTAAAGAATAATAATAATAATAATTCTATTTATCTAAGTTATGATGACGGGT
CAGGTACAGTGAGCTGGAGAGGGAAAGGGAATCTTTTTTTTTTTTTTTTTTTGTGCTAAGGGTA
TTCTAGACAAATGCATCTGTGTATAGATAGACAAATGATAGTGGAGACCTTCGTAGATTTCTAT
CATCGAGGTCTCTGAGTTTCTTTTTCAGCGGAGTTTTGGGTTGTTAGGCCTCTTTTAGTTTATG
TGGGTGTCTCTCTGTGAGGCAGTCACTAAGATCTCAAGCCCCAGCCAGAAGCTGTGAAACTTCA
AGTCCTATGGAGGGGAGGACTGGAATGTACCCCAGCTCTCTTGACCACAGAGCAGGTTCTTCAA
CTGACCCTCTTCTCATACCCTGTGACCTCATCAGGCTATTCCCTTGTTGTCATGGTTATGGAGA
GCTTGCAGCTGCCATCTTAAACGAGTTCTTTGGAGAGCCCATCTAACAGGAGGATTTTGGTTTG
GAGGTGCCCCTCCTGAAAAAGTAGGTGGGCAAAGGCTTTCTCTGGGATCAAATTCAAATAAACC
AAGTATTTATTGAGTGCTTACTATGTGCAAGGCCTGGTGCCTAGAAGCCATGAGAAAGAATTTA
TAACAGGACAGAGGTCCCTAAACTATAAACATCCACAGTCCCCCAATCTAGGAGGTTCCACTCC
ACTCCAGTGACTTTTAAAACCGCTTGTGCCTTTGAATGCCTTTCCTGAAACTTTTGGATCTTCC
TGTTCTGTCCCCTGCTCCTTCTAGGCCCCAAGACAAAGGGTAAAGCCAGTGGAGTCTGGGAAGG
GCATATAACACCGTTGAAGGGATCATCCCTTTGTGGAATCTTTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTTTAATTTAATAAATAAAAGTTCGATTTGAAA

hide sequence

RefSeq Acc Id:

XM_017594791 ⟹ XP_017450280

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,484,609 - 133,494,788 (-)	NCBI
Rnor_6.0	7	143,957,316 - 143,967,488 (-)	NCBI

Sequence:

show sequence

CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCTGC
CGCGCCACTGAGTAGCGGCAAGGACTCCGAGTCAAGAGTCGGATTCTAGGATTGGATCTGAGTG
AGCCGGCCTGAGAGAGGAGAAGATCCCTCCCAGCGCCCTCGGGCCACCCATTGCCAGTAATCTT
CGTGCCAGACCTCTTGAGAGGAGACGGGACAGCCAACCCTAGCCTCCCCAGCCTGAGGATGGCG
TCCTCTCTGCTTGAGGAAGAAGCTCACTATGGCTCCAGTCCCCTGGCCATGCTGACAGCAGCCT
GCAGCAAGTTTGGTGGCTCCAGCCCTCTGCGAGACTCAACAGCCCTGGGAAAAGGAGGCACAAA
GAAGCCATACACTGACCTTTCAGCCCCCAAAACCATGGGGGACGCCTACCCAGCTCCCTTCTCA
AGCACCAATGGACTCCTCTCCCCTGCAGGCAGTCCCCCGGCCCCGGCCTCTGGCTATGCCAATG
ACTACCCACCCTTTCCCCACTCATTTCCTGGGCCCACTGGTGCCCAAGACCCGGGGCTGCTGGT
GCCGAAGGGGCACAGCTCTTCTGACTGCCTGCCTAGTGTCTACACGTCCTTGGATATGTCCCAT
CCCTACGGCTCCTGGTACAAGGCGGGCATCCATGCAGGCATCTCACCAGGTCCTGGCAACACTC
CTACCCCTTGGTGGGACATGCACCCTGGGGGCAATTGGTTAGGTGGTGGGCAGGGCCAGGGTGA
TGGGCTGCAAGGGACACTGTCCACAGGCCCTGCCCAGCCTCCACTGAACCCCCAGCTGCCTACT
TACCCGTCTGACTTTGCCCCCCTTAACCCAGCTCCCTATCCAGCACCCCACCTCTTGCAACCAG
GTCCCCAGCATGTCCTACCCCAAGATGTCTATAAGCCCAAGGCAGTTGGCAATAGTGGGCAACT
GGAGGGGAGTGGTGCAGGCAAACCTCCCCGGGGTGCAGGCACAGGGGGCAGTGGTGGATATGCA
GGCAGTGGGGCAGGGCGTTCTACCTGCGACTGCCCCAACTGTCAGGAGCTAGAGCGGCTGGGGG
CAGCAGCGGCTGGGCTGAGGAAGAAGCCCATTCACAGCTGCCACATCCCCGGCTGCGGCAAGGT
GTACGGCAAGGCTTCGCATCTGAAAGCCCACTTGCGCTGGCACACTGGCGAGAGGCCTTTCGTC
TGCAACTGGCTTTTCTGTGGCAAGAGGTTCACCCGCTCTGACGAGCTGGAGCGCCACGTGCGCA
CTCACACCCGGGAGAAGAAGTTCACCTGTCTGCTCTGCTCCAAGCGCTTTACCCGAAGCGACCA
CTTGAGCAAACATCAGCGCACCCACGGGGAGCCAGGTCCCGGGCCGCCCCCAAGTGGCCCTAAG
GAGCTGGGGGAGGGTCGCAGCGTCGGGGAAGAAGAAGCCAATCAGCCGCCCCGATCTTCCACCT
CGCCTGCACCCCCAGAAAAAGCCCCTGGAGGCAGCCCAGAGCAGAGCAACCTGCTAGAGATCTG
AGCTGGGCAGAGGAAGATCTCCAGCTCCAGGGTCCTCTTGTCCCTCGCTCTCTCCTATGCATGC
CATGCCATACTCTGGGGGATCTCTCTCTGATCCCTTAGGCTTTCTCTTTGCATGTCTCCTCACT
CTTCTGTCTTAGCCAAATTCCTCTCAGGCCTTTGCCCGTGCCTAGTTCCCATGCTCTGACCTCC
TGAACTCTTTCTTCGCTGCCCCTGTTCTTCACAGCTTCCATCTGGCCGCACATCATTTTCTCAT
TAATTCTTTGCCATTCAATCTTTCTGCTTCCCAACCCTATTTGCCACTTTCCCGGAAGCTTCCA
GGCTGTCGCCCCGATTCCCCCCCCCCCGCTTTCCATTCTCTTGAGCTTTTTTAAAACAAACACG
ATGATGATGATGATGATGATGATGATGATGATGATAATTTATTGCCCCCTTGGTGGTTCTTCAT
TAGGAACCAGAGTTAAGGAGATTGGTGTTAGTAACCTGGCTGCGAGCAGAGTGCCAAGAAAGGG
GAAGCCCAATGGGGATCTGATCCCAAAGATGGGGTGACCCCAAGGTCAGGGAGGCTGTCCCCCA
GCCTTGAGTACTTAGCCCCTGTGCGCCAGGAGTAAAGAATAATAATAATAATAATTCTATTTAT
CTAAGTTATGATGACGGGTCAGGTACAGTGAGCTGGAGAGGGAAAGGGAATCTTTTTTTTTTTT
TTTTTTTGTGCTAAGGGTATTCTAGACAAATGCATCTGTGTATAGATAGACAAATGATAGTGGA
GACCTTCGTAGATTTCTATCATCGAGGTCTCTGAGTTTCTTTTTCAGCGGAGTTTTGGGTTGTT
AGGCCTCTTTTAGTTTATGTGGGTGTCTCTCTGTGAGGCAGTCACTAAGATCTCAAGCCCCAGC
CAGAAGCTGTGAAACTTCAAGTCCTATGGAGGGGAGGACTGGAATGTACCCCAGCTCTCTTGAC
CACAGAGCAGGTTCTTCAACTGACCCTCTTCTCATACCCTGTGACCTCATCAGGCTATTCCCTT
GTTGTCATGGTTATGGAGAGCTTGCAGCTGCCATCTTAAACGAGTTCTTTGGAGAGCCCATCTA
ACAGGAGGATTTTGGTTTGGAGGTGCCCCTCCTGAAAAAGTAGGTGGGCAAAGGCTTTCTCTGG
GATCAAATTCAAATAAACCAAGTATTTATTGAGTGCTTACTATGTGCAAGGCCTGGTGCCTAGA
AGCCATGAGAAAGAATTTATAACAGGACAGAGGTCCCTAAACTATAAACATCCACAGTCCCCCA
ATCTAGGAGGTTCCACTCCACTCCAGTGACTTTTAAAACCGCTTGTGCCTTTGAATGCCTTTCC
TGAAACTTTTGGATCTTCCTGTTCTGTCCCCTGCTCCTTCTAGGCCCCAAGACAAAGGGTAAAG
CCAGTGGAGTCTGGGAAGGGCATATAACACCGTTGAAGGGATCATCCCTTTGTGGAATCTTTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTAATTTAATAAATAAAAGTTCGA
TTTGAAA

hide sequence

RefSeq Acc Id:

XM_017594792 ⟹ XP_017450281

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	143,957,316 - 143,967,252 (-)	NCBI

Sequence:

show sequence

TCCCCAGGTACAGATACTGGGCTGCTCTGGGGGACTGCCCACAGCTGTCTATTGGATTTTTGGG
GAAGAAGCTCACTATGGCTCCAGTCCCCTGGCCATGCTGACAGCAGCCTGCAGCAAGTTTGGTG
GCTCCAGCCCTCTGCGAGACTCAACAGCCCTGGGAAAAGGAGGCACAAAGAAGCCATACACTGA
CCTTTCAGCCCCCAAAACCATGGGGGACGCCTACCCAGCTCCCTTCTCAAGCACCAATGGACTC
CTCTCCCCTGCAGGCAGTCCCCCGGCCCCGGCCTCTGGCTATGCCAATGACTACCCACCCTTTC
CCCACTCATTTCCTGGGCCCACTGGTGCCCAAGACCCGGGGCTGCTGGTGCCGAAGGGGCACAG
CTCTTCTGACTGCCTGCCTAGTGTCTACACGTCCTTGGATATGTCCCATCCCTACGGCTCCTGG
TACAAGGCGGGCATCCATGCAGGCATCTCACCAGGTCCTGGCAACACTCCTACCCCTTGGTGGG
ACATGCACCCTGGGGGCAATTGGTTAGGTGGTGGGCAGGGCCAGGGTGATGGGCTGCAAGGGAC
ACTGTCCACAGGCCCTGCCCAGCCTCCACTGAACCCCCAGCTGCCTACTTACCCGTCTGACTTT
GCCCCCCTTAACCCAGCTCCCTATCCAGCACCCCACCTCTTGCAACCAGGTCCCCAGCATGTCC
TACCCCAAGATGTCTATAAGCCCAAGGCAGTTGGCAATAGTGGGCAACTGGAGGGGAGTGGTGC
AGGCAAACCTCCCCGGGGTGCAGGCACAGGGGGCAGTGGTGGATATGCAGGCAGTGGGGCAGGG
CGTTCTACCTGCGACTGCCCCAACTGTCAGGAGCTAGAGCGGCTGGGGGCAGCAGCGGCTGGGC
TGAGGAAGAAGCCCATTCACAGCTGCCACATCCCCGGCTGCGGCAAGGTGTACGGCAAGGCTTC
GCATCTGAAAGCCCACTTGCGCTGGCACACTGGCGAGAGGCCTTTCGTCTGCAACTGGCTTTTC
TGTGGCAAGAGGTTCACCCGCTCTGACGAGCTGGAGCGCCACGTGCGCACTCACACCCGGGAGA
AGAAGTTCACCTGTCTGCTCTGCTCCAAGCGCTTTACCCGAAGCGACCACTTGAGCAAACATCA
GCGCACCCACGGGGAGCCAGGTCCCGGGCCGCCCCCAAGTGGCCCTAAGGAGCTGGGGGAGGGT
CGCAGCGTCGGGGAAGAAGAAGCCAATCAGCCGCCCCGATCTTCCACCTCGCCTGCACCCCCAG
AAAAAGCCCCTGGAGGCAGCCCAGAGCAGAGCAACCTGCTAGAGATCTGAGCTGGGCAGAGGAA
GATCTCCAGCTCCAGGGTCCTCTTGTCCCTCGCTCTCTCCTATGCATGCCATGCCATACTCTGG
GGGATCTCTCTCTGATCCCTTAGGCTTTCTCTTTGCATGTCTCCTCACTCTTCTGTCTTAGCCA
AATTCCTCTCAGGCCTTTGCCCGTGCCTAGTTCCCATGCTCTGACCTCCTGAACTCTTTCTTCG
CTGCCCCTGTTCTTCACAGCTTCCATCTGGCCGCACATCATTTTCTCATTAATTCTTTGCCATT
CAATCTTTCTGCTTCCCAACCCTATTTGCCACTTTCCCGGAAGCTTCCAGGCTGTCGCCCCGAT
TCCCCCCCCCCCGCTTTCCATTCTCTTGAGCTTTTTTAAAACAAACACGATGATGATGATGATG
ATGATGATGATGATGATGATAATTTATTGCCCCCTTGGTGGTTCTTCATTAGGAACCAGAGTTA
AGGAGATTGGTGTTAGTAACCTGGCTGCGAGCAGAGTGCCAAGAAAGGGGAAGCCCAATGGGGA
TCTGATCCCAAAGATGGGGTGACCCCAAGGTCAGGGAGGCTGTCCCCCAGCCTTGAGTACTTAG
CCCCTGTGCGCCAGGAGTAAAGAATAATAATAATAATAATTCTATTTATCTAAGTTATGATGAC
GGGTCAGGTACAGTGAGCTGGAGAGGGAAAGGGAATCTTTTTTTTTTTTTTTTTTTGTGCTAAG
GGTATTCTAGACAAATGCATCTGTGTATAGATAGACAAATGATAGTGGAGACCTTCGTAGATTT
CTATCATCGAGGTCTCTGAGTTTCTTTTTCAGCGGAGTTTTGGGTTGTTAGGCCTCTTTTAGTT
TATGTGGGTGTCTCTCTGTGAGGCAGTCACTAAGATCTCAAGCCCCAGCCAGAAGCTGTGAAAC
TTCAAGTCCTATGGAGGGGAGGACTGGAATGTACCCCAGCTCTCTTGACCACAGAGCAGGTTCT
TCAACTGACCCTCTTCTCATACCCTGTGACCTCATCAGGCTATTCCCTTGTTGTCATGGTTATG
GAGAGCTTGCAGCTGCCATCTTAAACGAGTTCTTTGGAGAGCCCATCTAACAGGAGGATTTTGG
TTTGGAGGTGCCCCTCCTGAAAAAGTAGGTGGGCAAAGGCTTTCTCTGGGATCAAATTCAAATA
AACCAAGTATTTATTGAGTGCTTACTATGTGCAAGGCCTGGTGCCTAGAAGCCATGAGAAAGAA
TTTATAACAGGACAGAGGTCCCTAAACTATAAACATCCACAGTCCCCCAATCTAGGAGGTTCCA
CTCCACTCCAGTGACTTTTAAAACCGCTTGTGCCTTTGAATGCCTTTCCTGAAACTTTTGGATC
TTCCTGTTCTGTCCCCTGCTCCTTCTAGGCCCCAAGACAAAGGGTAAAGCCAGTGGAGTCTGGG
AAGGGCATATAACACCGTTGAAGGGATCATCCCTTTGTGGAATCTTTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTTTAATTTAATAAATAAAAGTTCGATTTGAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001032721	(Get FASTA)	NCBI Sequence Viewer
	NP_852039	(Get FASTA)	NCBI Sequence Viewer
	XP_017450280	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAO18647	(Get FASTA)	NCBI Sequence Viewer
	DAA01455	(Get FASTA)	NCBI Sequence Viewer
	DAA01456	(Get FASTA)	NCBI Sequence Viewer
	EDL86842	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001032721 ⟸ NM_001037632
- Peptide Label:	isoform 1
- UniProtKB:	Q6IMK1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLTAACSKFGGSSPLRDSTALGKGGTKKPYTDLSAPKTMGDAYPAPFSSTNGLLSPAGSPPAPA SGYANDYPPFPHSFPGPTGAQDPGLLVPKGHSSSDCLPSVYTSLDMSHPYGSWYKAGIHAGISP GPGNTPTPWWDMHPGGNWLGGGQGQGDGLQGTLSTGPAQPPLNPQLPTYPSDFAPLNPAPYPAP HLLQPGPQHVLPQDVYKPKAVGNSGQLEGSGAGKPPRGAGTGGSGGYAGSGAGRSTCDCPNCQE LERLGAAAAGLRKKPIHSCHIPGCGKVYGKASHLKAHLRWHTGERPFVCNWLFCGKRFTRSDEL ERHVRTHTREKKFTCLLCSKRFTRSDHLSKHQRTHGEPGPGPPPSGPKELGEGRSVGEEEANQP PRSSTSPAPPEKAPGGSPEQSNLLEI hide sequence

RefSeq Acc Id:	NP_852039 ⟸ NM_181374
- Peptide Label:	isoform 2
- UniProtKB:	Q6IMK2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASSLLEEEAHYGSSPLAMLTAACSKFGGSSPLRDSTALGKGGTKKPYTDLSAPKTMGDAYPAP FSSTNGLLSPAGSPPAPASGYANDYPPFPHSFPGPTGAQDPGLLVPKGHSSSDCLPSVYTSLDM SHPYGSWYKAGIHAGISPGPGNTPTPWWDMHPGGNWLGGGQGQGDGLQGTLSTGPAQPPLNPQL PTYPSDFAPLNPAPYPAPHLLQPGPQHVLPQDVYKPKAVGNSGQLEGSGAGKPPRGAGTGGSGG YAGSGAGRSTCDCPNCQELERLGAAAAGLRKKPIHSCHIPGCGKVYGKASHLKAHLRWHTGERP FVCNWLFCGKRFTRSDELERHVRTHTREKKFTCLLCSKRFTRSDHLSKHQRTHGEPGPGPPPSG PKELGEGRSVGEEEANQPPRSSTSPAPPEKAPGGSPEQSNLLEI hide sequence

RefSeq Acc Id:

XP_006242452 ⟸ XM_006242390

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLTAACSKFGGSSPLRDSTALGKGGTKKPYTDLSAPKTMGDAYPAPFSSTNGLLSPAGSPPAPA
SGYANDYPPFPHSFPGPTGAQDPGLLVPKGHSSSDCLPSVYTSLDMSHPYGSWYKAGIHAGISP
GPGNTPTPWWDMHPGGNWLGGGQGQGDGLQGTLSTGPAQPPLNPQLPTYPSDFAPLNPAPYPAP
HLLQPGPQHVLPQDVYKPKAVGNSGQLEGSGAGKPPRGAGTGGSGGYAGSGAGRSTCDCPNCQE
LERLGAAAAGLRKKPIHSCHIPGCGKVYGKASHLKAHLRWHTGERPFVCNWLFCGKRFTRSDEL
ERHVRTHTREKKFTCLLCSKRFTRSDHLSKHQRTHGEPGPGPPPSGPKELGEGRSVGEEEANQP
PRSSTSPAPPEKAPGGSPEQSNLLEI

hide sequence

RefSeq Acc Id:

XP_008763928 ⟸ XM_008765706

- Peptide Label:

isoform X1

- Sequence:

show sequence

MASSLLEEEAHYGSSPLAMLTAACSKFGGSSPLRDSTALGKGGTKKPYTDLSAPKTMGDAYPAP
FSSTNGLLSPAGSPPAPASGYANDYPPFPHSFPGPTGAQDPGLLVPKGHSSSDCLPSVYTSLDM
SHPYGSWYKAGIHAGISPGPGNTPTPWWDMHPGGNWLGGGQGQGDGLQGTLSTGPAQPPLNPQL
PTYPSDFAPLNPAPYPAPHLLQPGPQHVLPQDVYKPKAVGNSGQLEGSGAGKPPRGAGTGGSGG
YAGSGAGRSTCDCPNCQELERLGAAAAGLRKKPIHSCHIPGCGKVYGKASHLKAHLRWHTGERP
FVCNWLFCGKRFTRSDELERHVRTHTREKKFTCLLCSKRFTRSDHLSKHQRTHGEPGPGPPPSG
PKELGEGRSVGEEEANQPPRSSTSPAPPEKAPGGSPEQSNLLEI

hide sequence

RefSeq Acc Id:	XP_017450280 ⟸ XM_017594791
- Peptide Label:	isoform X1
- UniProtKB:	Q6IMK2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASSLLEEEAHYGSSPLAMLTAACSKFGGSSPLRDSTALGKGGTKKPYTDLSAPKTMGDAYPAP FSSTNGLLSPAGSPPAPASGYANDYPPFPHSFPGPTGAQDPGLLVPKGHSSSDCLPSVYTSLDM SHPYGSWYKAGIHAGISPGPGNTPTPWWDMHPGGNWLGGGQGQGDGLQGTLSTGPAQPPLNPQL PTYPSDFAPLNPAPYPAPHLLQPGPQHVLPQDVYKPKAVGNSGQLEGSGAGKPPRGAGTGGSGG YAGSGAGRSTCDCPNCQELERLGAAAAGLRKKPIHSCHIPGCGKVYGKASHLKAHLRWHTGERP FVCNWLFCGKRFTRSDELERHVRTHTREKKFTCLLCSKRFTRSDHLSKHQRTHGEPGPGPPPSG PKELGEGRSVGEEEANQPPRSSTSPAPPEKAPGGSPEQSNLLEI hide sequence

RefSeq Acc Id:

XP_017450281 ⟸ XM_017594792

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLTAACSKFGGSSPLRDSTALGKGGTKKPYTDLSAPKTMGDAYPAPFSSTNGLLSPAGSPPAPA
SGYANDYPPFPHSFPGPTGAQDPGLLVPKGHSSSDCLPSVYTSLDMSHPYGSWYKAGIHAGISP
GPGNTPTPWWDMHPGGNWLGGGQGQGDGLQGTLSTGPAQPPLNPQLPTYPSDFAPLNPAPYPAP
HLLQPGPQHVLPQDVYKPKAVGNSGQLEGSGAGKPPRGAGTGGSGGYAGSGAGRSTCDCPNCQE
LERLGAAAAGLRKKPIHSCHIPGCGKVYGKASHLKAHLRWHTGERPFVCNWLFCGKRFTRSDEL
ERHVRTHTREKKFTCLLCSKRFTRSDHLSKHQRTHGEPGPGPPPSGPKELGEGRSVGEEEANQP
PRSSTSPAPPEKAPGGSPEQSNLLEI

hide sequence

RefSeq Acc Id:

ENSRNOP00000018828 ⟸ ENSRNOT00000018828

RefSeq Acc Id:

ENSRNOP00000074457 ⟸ ENSRNOT00000081758

Protein Domains

C2H2-type

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695698

Promoter ID:

EPDNEW_R6223

Type:

multiple initiation site

Name:

Sp7_1

Description:

Sp7 transcription factor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	143,967,469 - 143,967,529	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:631377	AgrOrtholog
Ensembl Genes	ENSRNOG00000014082	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000018828	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000074457	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018828	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000081758	ENTREZGENE, UniProtKB/TrEMBL
InterPro	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:300260	UniProtKB/TrEMBL
NCBI Gene	300260	ENTREZGENE
Pfam	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Sp7	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	Q6IMK1	ENTREZGENE, UniProtKB/TrEMBL
	Q6IMK2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-02-11	Sp7	Sp7 transcription factor			Symbol and Name status set to approved	625702	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM