Rarg (retinoic acid receptor, gamma)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Rarg (retinoic acid receptor, gamma) Rattus norvegicus

Analyze

Symbol:

Rarg

Name:

retinoic acid receptor, gamma

RGD ID:

1583230

Description:

Enables nuclear receptor activity. Involved in several processes, including cellular response to retinoic acid; regulation of myelination; and retinoic acid receptor signaling pathway. Predicted to be located in chromatin and nucleoplasm. Predicted to be part of transcription regulator complex. Orthologous to human RARG (retinoic acid receptor gamma); PARTICIPATES IN retinoic acid signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC685072; retinoic acid receptor gamma; similar to Retinoic acid receptor gamma-A (RAR-gamma-A)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RARG (retinoic acid receptor gamma)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Rarg (retinoic acid receptor, gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rarg (retinoic acid receptor gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RARG (retinoic acid receptor gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RARG (retinoic acid receptor gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rarg (retinoic acid receptor gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RARG (retinoic acid receptor gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RARG (retinoic acid receptor gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rarg (retinoic acid receptor gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RARA (retinoic acid receptor alpha)	HGNC	OrthoDB
Homo sapiens (human):	RARB (retinoic acid receptor beta)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Rarg (retinoic acid receptor, gamma)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RARG (retinoic acid receptor gamma)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rarga (retinoic acid receptor gamma a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rargb (retinoic acid receptor, gamma b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	sex-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	133,367,833 - 133,390,301 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	133,367,833 - 133,390,177 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	135,129,112 - 135,151,291 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	137,358,476 - 137,380,666 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	137,343,604 - 137,365,726 (-)	NCBI	Rnor_WKY
Rnor_6.0	7	143,840,739 - 143,863,206 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	143,839,980 - 143,863,186 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	141,637,841 - 141,660,460 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	140,991,447 - 141,014,108 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	129,801,582 - 129,823,782 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cardiotoxicity (ISO)

cleft palate (ISO)

genetic disease (ISO)

heart disease (ISO)

Musculoskeletal Abnormalities (ISO)

Peters anomaly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-naphthylamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

4-vinylcyclohexene dioxide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

9-cis-retinoic acid (ISO)

acetamide (EXP)

acrylamide (ISO)

adapalene (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

aldrin (ISO)

all-trans-4-hydroxyretinoic acid (ISO)

all-trans-4-oxoretinoic acid (ISO)

all-trans-retinoic acid (ISO)

all-trans-retinol (ISO)

aristolochic acid A (ISO)

arotinoid acid (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

carotenoid (ISO)

cisplatin (ISO)

cyclophosphamide (EXP)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

dieldrin (ISO)

doxorubicin (ISO)

endosulfan (ISO)

endrin (ISO)

enilconazole (ISO)

ethanol (ISO)

ezetimibe (ISO)

gentamycin (EXP)

griseofulvin (ISO)

isotretinoin (EXP)

lipopolysaccharide (ISO)

methamphetamine (ISO)

methoxychlor (ISO)

mifepristone (ISO)

nicotine (ISO)

orphenadrine (EXP)

paracetamol (EXP,ISO)

phenytoin (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

quinomethionate (ISO)

Ro 41-5253 (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamibarotene (ISO)

tazarotene (ISO)

tazarotenic acid (ISO)

testosterone (EXP)

thiazoles (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

toluene (ISO)

tributylstannane (EXP,ISO)

trichloroethene (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterior/posterior pattern specification (ISO)

apoptotic process (ISO)

bone development (ISO)

bone morphogenesis (ISO)

camera-type eye development (ISO)

cell differentiation (IBA)

cell population proliferation (ISO)

cellular response to leukemia inhibitory factor (ISO)

cellular response to retinoic acid (IEP,ISO)

chondrocyte development (ISO)

DNA-templated transcription (IEA)

embryonic camera-type eye development (ISO)

embryonic eye morphogenesis (ISO)

embryonic hindlimb morphogenesis (ISO)

epithelium development (ISO)

face development (ISO)

gland development (ISO)

glandular epithelial cell development (ISO)

growth plate cartilage chondrocyte growth (ISO)

growth plate cartilage development (ISO)

Harderian gland development (ISO)

hormone-mediated signaling pathway (IBA)

limb development (ISO)

multicellular organism growth (ISO)

negative regulation of apoptotic process (ISO)

negative regulation of cartilage development (ISO)

negative regulation of cell differentiation (ISO)

negative regulation of chondrocyte differentiation (ISO)

negative regulation of stem cell proliferation (ISO)

negative regulation of transcription by RNA polymerase II (IBA,ISO)

neural tube closure (ISO)

positive regulation of apoptotic process (ISO)

positive regulation of cell population proliferation (IMP,ISO)

positive regulation of gene expression (ISO)

positive regulation of programmed cell death (ISO)

positive regulation of transcription by RNA polymerase II (IBA,ISO)

programmed cell death (ISO)

prostate gland epithelium morphogenesis (ISO)

regulation of gene expression (ISO)

regulation of myelination (IDA)

regulation of myeloid cell differentiation (ISO)

reproductive structure development (ISO)

response to retinoic acid (ISO)

retina development in camera-type eye (ISO)

retinal pigment epithelium development (ISO)

retinoic acid receptor signaling pathway (IBA,IMP,ISO)

stem cell proliferation (ISO)

trachea cartilage development (ISO)

Cellular Component

chromatin (ISO)

nucleoplasm (IEA,ISO)

nucleus (ISO)

transcription regulator complex (ISO)

Molecular Function

chromatin binding (ISO)

DNA binding (ISO)

DNA-binding transcription factor activity (ISO)

nuclear receptor activity (IBA,IMP)

nuclear retinoid X receptor binding (ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

retinoic acid signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Activation of retinoic acid receptor gamma induces proliferation of immortalized hippocampal progenitor cells.	Chung JJ, etal., Brain Res Mol Brain Res 2000 Nov 10;83(1-2):52-62.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	International Union of Pharmacology. LX. Retinoic acid receptors.	Germain P, etal., Pharmacol Rev. 2006 Dec;58(4):712-25.
4.	Retinoic acid regulates myelin formation in the peripheral nervous system.	Latasa MJ, etal., Glia. 2010 Sep;58(12):1451-64.
5.	Vitamin A regulation of gene expression: molecular mechanism of a prototype gene.	McGrane MM J Nutr Biochem. 2007 Aug;18(8):497-508. Epub 2007 Feb 22.
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Dynamic and combinatorial control of gene expression by nuclear retinoic acid receptors (RARs).	Rochette-Egly C and Germain P, Nucl Recept Signal. 2009 May 8;7:e005.

Additional References at PubMed

PMID:1655807	PMID:2157970	PMID:7607067	PMID:7720676	PMID:8152920	PMID:8388780	PMID:8681798	PMID:9376317	PMID:10075839	PMID:10684250	PMID:11784046	PMID:12186877
PMID:12193579	PMID:15327771	PMID:15734736	PMID:15766748	PMID:16207763	PMID:17943189	PMID:18439490	PMID:18845237	PMID:19389355	PMID:20201933	PMID:20439489	PMID:21131358
PMID:23136256	PMID:23327965

Genomics

Comparative Map Data

Rarg
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	7	133,367,833 - 133,390,301 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	133,367,833 - 133,390,177 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	135,129,112 - 135,151,291 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	7	137,358,476 - 137,380,666 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	7	137,343,604 - 137,365,726 (-)	NCBI	Rnor_WKY
Rnor_6.0	7	143,840,739 - 143,863,206 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	143,839,980 - 143,863,186 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	141,637,841 - 141,660,460 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	140,991,447 - 141,014,108 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	129,801,582 - 129,823,782 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

RARG
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	53,210,569 - 53,232,209 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	12	53,210,567 - 53,232,980 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	53,604,353 - 53,625,993 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	51,890,620 - 51,912,303 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	51,890,620 - 51,912,247	NCBI
Celera	12	53,252,956 - 53,274,263 (-)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	50,646,458 - 50,668,146 (-)	NCBI		HuRef
CHM1_1	12	53,570,785 - 53,592,447 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	53,176,168 - 53,197,803 (-)	NCBI		T2T-CHM13v2.0

Rarg
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	102,143,373 - 102,165,957 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	102,143,373 - 102,165,952 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	102,234,938 - 102,257,522 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	102,234,938 - 102,257,517 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	102,065,371 - 102,087,914 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	102,062,974 - 102,085,313 (-)	NCBI		MGSCv36	mm8
Celera	15	104,391,902 - 104,414,975 (-)	NCBI		Celera
Cytogenetic Map	15	F2	NCBI
cM Map	15	57.4	NCBI

Rarg
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	480,070 - 501,356 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	480,257 - 501,172 (-)	NCBI	ChiLan1.0	ChiLan1.0

RARG
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	36,303,328 - 36,325,111 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	36,303,359 - 36,325,111 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	35,521,276 - 35,542,814 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

RARG
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	1,958,432 - 1,978,471 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	1,958,204 - 1,978,476 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	44,271,142 - 44,291,835 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	1,961,941 - 1,982,664 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	1,962,558 - 1,982,661 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	1,980,967 - 2,000,875 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	1,965,173 - 1,985,840 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	44,671,821 - 44,692,522 (-)	NCBI		UU_Cfam_GSD_1.0

Rarg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	62,640,418 - 62,661,874 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	10,500,622 - 10,524,824 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936512	10,502,954 - 10,524,796 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RARG
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	18,436,270 - 18,458,624 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	18,436,267 - 18,458,625 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	18,869,535 - 18,878,967 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RARG
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	49,319,104 - 49,340,725 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	49,319,839 - 49,328,656 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	196,719,056 - 196,740,773 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rarg
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624904	1,255,854 - 1,277,946 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rarg
82 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	822
Count of miRNA genes:	254
Interacting mature miRNAs:	330
Transcripts:	ENSRNOT00000016801, ENSRNOT00000017096
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	102297359	133492884	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat
631663	Bw6	Body weight QTL 6	3.4		body mass (VT:0001259)	body weight (CMO:0000012)	7	111075573	134976056	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	111182207	135012528	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	112308254	133492884	Rat
1357339	Stl14	Serum triglyceride level QTL 14	3.45	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	112729683	133492707	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	119513385	135012528	Rat

Markers in Region

Rarg

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	133,367,993 - 133,368,888 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	143,840,900 - 143,841,794	NCBI	Rnor6.0
Rnor_5.0	7	141,638,002 - 141,638,896	UniSTS	Rnor5.0
RGSC_v3.4	7	140,991,608 - 140,992,502	UniSTS	RGSC3.4
Celera	7	129,801,743 - 129,802,637	UniSTS
Cytogenetic Map	7	q36	UniSTS

GDB:677651

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	133,367,905 - 133,368,232 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	143,840,812 - 143,841,138	NCBI	Rnor6.0
Rnor_5.0	7	141,637,914 - 141,638,240	UniSTS	Rnor5.0
RGSC_v3.4	7	140,991,520 - 140,991,846	UniSTS	RGSC3.4
Celera	7	129,801,655 - 129,801,981	UniSTS
Cytogenetic Map	7	q36	UniSTS

Rarg

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	133,368,766 - 133,368,942 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	143,841,673 - 143,841,848	NCBI	Rnor6.0
Rnor_5.0	7	141,638,775 - 141,638,950	UniSTS	Rnor5.0
RGSC_v3.4	7	140,992,381 - 140,992,556	UniSTS	RGSC3.4
Celera	7	129,802,516 - 129,802,691	UniSTS
Cytogenetic Map	7	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1		8	2	8	2			6	23	29	11
Low	2	43	49	39	11	39	8	11	68	12	12		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001135249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001135250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC110347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	S77802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000016801 ⟹ ENSRNOP00000016801

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	133,367,833 - 133,379,216 (-)	Ensembl
Rnor_6.0 Ensembl	7	143,840,739 - 143,852,119 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000017096 ⟹ ENSRNOP00000017096

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	133,367,840 - 133,390,177 (-)	Ensembl
Rnor_6.0 Ensembl	7	143,839,980 - 143,863,186 (-)	Ensembl

RefSeq Acc Id:

NM_001135249 ⟹ NP_001128721

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,367,833 - 133,390,301 (-)	NCBI
Rnor_6.0	7	143,840,739 - 143,863,206 (-)	NCBI
Rnor_5.0	7	141,637,841 - 141,660,460 (-)	NCBI
RGSC_v3.4	7	140,991,447 - 141,014,108 (-)	RGD
Celera	7	129,801,582 - 129,823,782 (-)	RGD

Sequence:

show sequence

GGGGGGGTAGGGAGGGAGAAAAAGAAAGAAAATATTTTCCGTGTCCCCGCCTGCGGAGTCAGTG
TGCGGTTTGGGAGAAAATGTGTCGGATATTTTGGGGCGGTCACGTGGGCGGGCGGGCTCCGAGA
GGCCCCGGGATTGTCCCAGCCTAGAGCCGTGCCCCCCTGAAGCCCCCCATTACCGCGAGTCACT
AACACCGCGGCGCTCCATCCCGGAGACCGCCCGACGCCGGGACCTCGGGGCTCTGCGGCCTTCC
TTCCCCCGCCCTCCCCTCCAGCAGTTTCTACCAGGTCCCTCACCTCAGCCTGGCCCAGTATGTA
GAAGGAAATCTCTGTAGAGGCCAGAGGGACCCTTGGAGACCCATTGGACAGGCCAGGCAGGGTG
GGCACGGAGCCTCCCAGGCCAGGGCAGTGGGCATGGGCGGGGGCTGCAGCTGAAGATCACCCCC
GCCCACGGCAGAGTACAAGGGATTCCCACGCTGCAGCTACCATGGCCACCAATAAGGAGCGACT
CTTTGCGCCCAACGCCCTGGGGCCTGGATCTGGTTACCCAGGAGCAGGCTTCCCGTTCGCCTTC
CCAGGTGCACTCAGAGGGTCACCGCCATTTGAGATGCTGAGCCCCAGCTTCCGGGGCCTTGGCC
AGCCTGACCTCCCCAAGGAGATGGCTTCTCTCTCCGTGGAGACTCAGAGCACCAGCTCCGAGGA
GATGGTGCCCAGCTCTCCCTCACCCCCACCACCTCCTCGGGTCTATAAGCCGTGCTTTGTATGC
AACGACAAGTCTTCCGGCTACCACTATGGGGTCAGCTCCTGCGAAGGCTGCAAGGGCTTCTTCA
GACGCAGCATCCAGAAAAACATGGTGTATACGTGTCACCGTGACAAAAACTGTATCATCAACAA
GGTAACCAGGAATCGGTGCCAGTACTGCCGGCTGCAAAAGTGTTTCGAAGTGGGCATGTCCAAG
GAAGCTGTAAGGAATGACCGGAACAAGAAGAAAAAGGAGGTAAAGGAAGAAGGCCCACCAGACA
ACTACGAACTGAGTCCACAGTTAGAGGAGCTCATCACCAAGGTCAGCAAAGCCCACCAGGAGAC
TTTCCCCTCACTCTGCCAGCTGGGCAAGTACACCACGAACTCCAGCGCAGATCACCGGGTGCAA
CTGGACCTGGGGCTGTGGGACAAGTTCAGTGAGCTGGCCACCAAATGCATCATCAAGATTGTGG
AGTTTGCGAAGCGGCTGCCTGGTTTTACAGGACTCAGCATTGCTGACCAGATCACGCTGCTCAA
GGCCGCCTGCCTGGACATCCTAATGCTACGGATCTGTACAAGGTATACCCCAGAGCAAGACACC
ATGACATTCTCGGATGGGCTGACCCTGAACCGAACCCAGATGCACAATGCTGGCTTTGGGCCCC
TTACAGACCTCGTCTTCGCCTTTGCGGGGCAGCTCCTGCCCTTGGAGATGGATGACACGGAGAC
TGGGCTGCTTAGTGCTATCTGCCTCATCTGTGGAGACCGAATGGACCTGGAAGAACCCGAGAAG
GTGGACAAGCTGCAGGAGCCCCTGTTGGAAGCCCTAAGGCTTTATGCCCGGCGACGGAGACCCA
GCCAACCATACATGTTTCCAAGGATGCTCATGAAAATCACAGACCTCCGGGGCATCAGCACCAA
GGGAGCAGAAAGAGCTATAACCCTCAAGATGGAGATTCCAGGCCCGATGCCCCCCCTGATCCGA
GAGATGCTGGAGAACCCTGAGATGTTTGAGGACGACTCCTCGAAGCCTGGCCCCCACCCCAAGG
CTTCCAGTGAGGATGAAGCTCCAGGGAGCCAGGGAAAACGGGGCCAAAGTCCCCAACCTGACCA
GGGCCCCTGACCTACCCAACTGTGGGGTTGGGCCCCAGGCAGCAGACTGACCATTTCCCAGATA
CCGCCAGTGACTGGGGGAGGACCTGCCCCGCCCACTCCCCACCCTTTCAAGAGCTCGTTGTTTT
GCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCCTGTCCTGTTCTAACTGGCTCCCTCTACAGTC
CCAAGGGACTGCCGCGCACCTACCCGAAGAGCCGAGCCGGAGAAGGGGCTAGCCTGGGTCTAGA
CTCTAAAATCTCAGCACTGCCTTTCAGATTCAGGCCACAGGTTCCCCACGCAAGAGGAAGCCCC
GCCTTCCCATAGCCCTTTCCTCTGCCAGGTGCTTGGGCCTCTGGGAGCAAACAGGAACACTAGA
GACCAAAAGGGGGGCCCTGGGGAGGGCTGAGCCCACCCTTGCGCCCCACCCTGAGCGCCTGACG
CCGCGTGATGAAACTGCCTCGCTCAGTGCCCTCTGTGCCCCATCCTAATCCTCCTGCCAGGTGT
AGGGGCAGGCTGGGGCCTGCATTTCTGGGGTGGGGCCTGAGGGAGAAGGGAGAAATGTGAGCCC
ATTCTGTACCTCTGCTGAAGTACGGCACTCATCCTGGGCCCTCCATTTTATAAGCCTCTCCCTT
ACTCCTGTCGCGTGCCTTGGCCTCCCGCCCTCATAAACGCCATCAGGCAGGGCCCTCCTACACT
ACAGAGGGGCCAGGGGTCCCTCTCCTAGTGCCTTCTACCCTTGACCCCCCCAGAGCAGCTTGGC
CCCGGGGAGGGGAGATGCTGCTTAGCTGATCCCACCCTGACCCAGAGGAAGGCCTCTATTTATT
TATTAGCTTTTGTTTACACCCTGGAATGACCCCTTCCTCCAGGGGTCTTGGGAGGGGGAGCCCA
GGGCCTCTGTGACCCCCCTCCTTTCTTTCCCCAAGCCCCCAGTTTATATTTAGCTGCCAAATAA
GATTCTTGCAGGCTCCCCCTTTTCTCTGGGGGGTTAGGGTGCTGTCCCCTCCCCTCTGTTTACA
TCTCCTACCCCGCTGTTCGCATATTGCTGAGTTTTCTATTTTTGCAAAATAAAGTGATGGAAAC
TCAA

hide sequence

RefSeq Acc Id:

NM_001135250 ⟹ NP_001128722

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,367,833 - 133,379,216 (-)	NCBI
Rnor_6.0	7	143,840,739 - 143,852,119 (-)	NCBI
Rnor_5.0	7	141,637,841 - 141,660,460 (-)	NCBI
RGSC_v3.4	7	140,991,447 - 141,014,108 (-)	RGD
Celera	7	129,801,582 - 129,812,946 (-)	NCBI

Sequence:

show sequence

CATCCCTCTAGGCTCTGCTTTTACAAAAGGTCTCCACAGAGCTAGCTGCCTAGGCACCCTAAGT
GAGGCAGACGGAGGCAGAAGCTAGCTTCGCCTTCGCGCCCCGCCCAGTCCCTTTCCCTTGCTGG
GGATCCCCCTCTTCCCCGCCCACCCCTTACCCCCCATGGATCTCAGCGCCCTATGCTAGCCCTC
CCCCTCCCCCCTCCAGGAGCGGGGCACTGCGGGGGGAGGAGGGGGAATGGGCTGCGGGTCCTTG
GTGTTCTAGCACCCAGTTTCTCTCCAAGCCGGGTCGCGATGTACGACTGCATGGAATCGTTTGT
CCCGGGTCCGCGACGGCTGTATGGGGCGGCCGGGCCCGGGGCCGGCTTGCTACGCAGAGCCACT
GGCAGCTCCTGTTTCGCCGGACTTGAGTCTTTTGCCTGGGCACAGCCTGCCAGTCTACAATCCG
TGGAGACTCAGAGCACCAGCTCCGAGGAGATGGTGCCCAGCTCTCCCTCACCCCCACCACCTCC
TCGGGTCTATAAGCCGTGCTTTGTATGCAACGACAAGTCTTCCGGCTACCACTATGGGGTCAGC
TCCTGCGAAGGCTGCAAGGGCTTCTTCAGACGCAGCATCCAGAAAAACATGGTGTATACGTGTC
ACCGTGACAAAAACTGTATCATCAACAAGGTAACCAGGAATCGGTGCCAGTACTGCCGGCTGCA
AAAGTGTTTCGAAGTGGGCATGTCCAAGGAAGCTGTAAGGAATGACCGGAACAAGAAGAAAAAG
GAGGTAAAGGAAGAAGGCCCACCAGACAACTACGAACTGAGTCCACAGTTAGAGGAGCTCATCA
CCAAGGTCAGCAAAGCCCACCAGGAGACTTTCCCCTCACTCTGCCAGCTGGGCAAGTACACCAC
GAACTCCAGCGCAGATCACCGGGTGCAACTGGACCTGGGGCTGTGGGACAAGTTCAGTGAGCTG
GCCACCAAATGCATCATCAAGATTGTGGAGTTTGCGAAGCGGCTGCCTGGTTTTACAGGACTCA
GCATTGCTGACCAGATCACGCTGCTCAAGGCCGCCTGCCTGGACATCCTAATGCTACGGATCTG
TACAAGGTATACCCCAGAGCAAGACACCATGACATTCTCGGATGGGCTGACCCTGAACCGAACC
CAGATGCACAATGCTGGCTTTGGGCCCCTTACAGACCTCGTCTTCGCCTTTGCGGGGCAGCTCC
TGCCCTTGGAGATGGATGACACGGAGACTGGGCTGCTTAGTGCTATCTGCCTCATCTGTGGAGA
CCGAATGGACCTGGAAGAACCCGAGAAGGTGGACAAGCTGCAGGAGCCCCTGTTGGAAGCCCTA
AGGCTTTATGCCCGGCGACGGAGACCCAGCCAACCATACATGTTTCCAAGGATGCTCATGAAAA
TCACAGACCTCCGGGGCATCAGCACCAAGGGAGCAGAAAGAGCTATAACCCTCAAGATGGAGAT
TCCAGGCCCGATGCCCCCCCTGATCCGAGAGATGCTGGAGAACCCTGAGATGTTTGAGGACGAC
TCCTCGAAGCCTGGCCCCCACCCCAAGGCTTCCAGTGAGGATGAAGCTCCAGGGAGCCAGGGAA
AACGGGGCCAAAGTCCCCAACCTGACCAGGGCCCCTGACCTACCCAACTGTGGGGTTGGGCCCC
AGGCAGCAGACTGACCATTTCCCAGATACCGCCAGTGACTGGGGGAGGACCTGCCCCGCCCACT
CCCCACCCTTTCAAGAGCTCGTTGTTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCCTGT
CCTGTTCTAACTGGCTCCCTCTACAGTCCCAAGGGACTGCCGCGCACCTACCCGAAGAGCCGAG
CCGGAGAAGGGGCTAGCCTGGGTCTAGACTCTAAAATCTCAGCACTGCCTTTCAGATTCAGGCC
ACAGGTTCCCCACGCAAGAGGAAGCCCCGCCTTCCCATAGCCCTTTCCTCTGCCAGGTGCTTGG
GCCTCTGGGAGCAAACAGGAACACTAGAGACCAAAAGGGGGGCCCTGGGGAGGGCTGAGCCCAC
CCTTGCGCCCCACCCTGAGCGCCTGACGCCGCGTGATGAAACTGCCTCGCTCAGTGCCCTCTGT
GCCCCATCCTAATCCTCCTGCCAGGTGTAGGGGCAGGCTGGGGCCTGCATTTCTGGGGTGGGGC
CTGAGGGAGAAGGGAGAAATGTGAGCCCATTCTGTACCTCTGCTGAAGTACGGCACTCATCCTG
GGCCCTCCATTTTATAAGCCTCTCCCTTACTCCTGTCGCGTGCCTTGGCCTCCCGCCCTCATAA
ACGCCATCAGGCAGGGCCCTCCTACACTACAGAGGGGCCAGGGGTCCCTCTCCTAGTGCCTTCT
ACCCTTGACCCCCCCAGAGCAGCTTGGCCCCGGGGAGGGGAGATGCTGCTTAGCTGATCCCACC
CTGACCCAGAGGAAGGCCTCTATTTATTTATTAGCTTTTGTTTACACCCTGGAATGACCCCTTC
CTCCAGGGGTCTTGGGAGGGGGAGCCCAGGGCCTCTGTGACCCCCCTCCTTTCTTTCCCCAAGC
CCCCAGTTTATATTTAGCTGCCAAATAAGATTCTTGCAGGCTCCCCCTTTTCTCTGGGGGGTTA
GGGTGCTGTCCCCTCCCCTCTGTTTACATCTCCTACCCCGCTGTTCGCATATTGCTGAGTTTTC
TATTTTTGCAAAATAAAGTGATGGAAACTCAA

hide sequence

RefSeq Acc Id:

XM_008765784 ⟹ XP_008764006

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,367,833 - 133,379,965 (-)	NCBI
Rnor_6.0	7	143,840,739 - 143,852,842 (-)	NCBI

Sequence:

show sequence

GCGGGGCCGGGTCAGGAGGAGGTGAGCGCGCCCGGCCACCCGCCCCGAGGGGGGTTCCCGGAGA
GTTCACCGCGGGAGCGCGCTCTGGCCCTTGGACCGGGGGTGGGAAGATCGGGAAGGAAGGAGGC
GGCAGCGCGCACTGAGCCGCAGGAATGTAGTATTCAGCTCTGAAGCGCGCGCGCGCGAAGGAAG
AAGGAGGAGCCCGGCCTGGGAATGAGGGGGGTGGAGGTAACGCAGGTCTTACGGGTCTGGAGAG
CTGCGTAGCTCAGGGCATCTCAAGGTTCCCTTCTACGCAGCCATTCTTAACACCCTTGCTTGTG
TTGACTTGTATGCCGAAGAAAGGTTGAAAGGAGAGGGGAAGACGCAGTGAAAGGAAATGCGCAT
ATTTGATTCCTTCACTCCTTCCCCGAATCCCCACCTGGGCACGCGCCTAAGTGCAAATGTGTTC
AGACCTCCAGGGCTGTCGAGAGAGCATGATTACAAGCATTTTCCCCCGAGCCAGCCGGGTCGCG
ATGTACGACTGCATGGAATCGTTTGTCCCGGGTCCGCGACGGCTGTATGGGGCGGCCGGGCCCG
GGGCCGGCTTGCTACGCAGAGCCACTGGCAGCTCCTGTTTCGCCGGACTTGAGTCTTTTGCCTG
GGCACAGCCTGCCAGTCTACAATCCGTGGAGACTCAGAGCACCAGCTCCGAGGAGATGGTGCCC
AGCTCTCCCTCACCCCCACCACCTCCTCGGGTCTATAAGCCGTGCTTTGTATGCAACGACAAGT
CTTCCGGCTACCACTATGGGGTCAGCTCCTGCGAAGGCTGCAAGGGCTTCTTCAGACGCAGCAT
CCAGAAAAACATGGTGTATACGTGTCACCGTGACAAAAACTGTATCATCAACAAGGTAACCAGG
AATCGGTGCCAGTACTGCCGGCTGCAAAAGTGTTTCGAAGTGGGCATGTCCAAGGAAGCTGTAA
GGAATGACCGGAACAAGAAGAAAAAGGAGGTAAAGGAAGAAGGCCCACCAGACAACTACGAACT
GAGTCCACAGTTAGAGGAGCTCATCACCAAGGTCAGCAAAGCCCACCAGGAGACTTTCCCCTCA
CTCTGCCAGCTGGGCAAGTACACCACGAACTCCAGCGCAGATCACCGGGTGCAACTGGACCTGG
GGCTGTGGGACAAGTTCAGTGAGCTGGCCACCAAATGCATCATCAAGATTGTGGAGTTTGCGAA
GCGGCTGCCTGGTTTTACAGGACTCAGCATTGCTGACCAGATCACGCTGCTCAAGGCCGCCTGC
CTGGACATCCTAATGCTACGGATCTGTACAAGGTATACCCCAGAGCAAGACACCATGACATTCT
CGGATGGGCTGACCCTGAACCGAACCCAGATGCACAATGCTGGCTTTGGGCCCCTTACAGACCT
CGTCTTCGCCTTTGCGGGGCAGCTCCTGCCCTTGGAGATGGATGACACGGAGACTGGGCTGCTT
AGTGCTATCTGCCTCATCTGTGGAGACCGAATGGACCTGGAAGAACCCGAGAAGGTGGACAAGC
TGCAGGAGCCCCTGTTGGAAGCCCTAAGGCTTTATGCCCGGCGACGGAGACCCAGCCAACCATA
CATGTTTCCAAGGATGCTCATGAAAATCACAGACCTCCGGGGCATCAGCACCAAGGGAGCAGAA
AGAGCTATAACCCTCAAGATGGAGATTCCAGGCCCGATGCCCCCCCTGATCCGAGAGATGCTGG
AGAACCCTGAGATGTTTGAGGACGACTCCTCGAAGCCTGGCCCCCACCCCAAGGCTTCCAGTGA
GGATGAAGCTCCAGGGAGCCAGGGAAAACGGGGCCAAAGTCCCCAACCTGACCAGGGCCCCTGA
CCTACCCAACTGTGGGGTTGGGCCCCAGGCAGCAGACTGACCATTTCCCAGATACCGCCAGTGA
CTGGGGGAGGACCTGCCCCGCCCACTCCCCACCCTTTCAAGAGCTCGTTGTTTTGCCAAAGTTT
CTAGGGGTGCCTGTGTTCATCCCTGTCCTGTTCTAACTGGCTCCCTCTACAGTCCCAAGGGACT
GCCGCGCACCTACCCGAAGAGCCGAGCCGGAGAAGGGGCTAGCCTGGGTCTAGACTCTAAAATC
TCAGCACTGCCTTTCAGATTCAGGCCACAGGTTCCCCACGCAAGAGGAAGCCCCGCCTTCCCAT
AGCCCTTTCCTCTGCCAGGTGCTTGGGCCTCTGGGAGCAAACAGGAACACTAGAGACCAAAAGG
GGGGCCCTGGGGAGGGCTGAGCCCACCCTTGCGCCCCACCCTGAGCGCCTGACGCCGCGTGATG
AAACTGCCTCGCTCAGTGCCCTCTGTGCCCCATCCTAATCCTCCTGCCAGGTGTAGGGGCAGGC
TGGGGCCTGCATTTCTGGGGTGGGGCCTGAGGGAGAAGGGAGAAATGTGAGCCCATTCTGTACC
TCTGCTGAAGTACGGCACTCATCCTGGGCCCTCCATTTTATAAGCCTCTCCCTTACTCCTGTCG
CGTGCCTTGGCCTCCCGCCCTCATAAACGCCATCAGGCAGGGCCCTCCTACACTACAGAGGGGC
CAGGGGTCCCTCTCCTAGTGCCTTCTACCCTTGACCCCCCCAGAGCAGCTTGGCCCCGGGGAGG
GGAGATGCTGCTTAGCTGATCCCACCCTGACCCAGAGGAAGGCCTCTATTTATTTATTAGCTTT
TGTTTACACCCTGGAATGACCCCTTCCTCCAGGGGTCTTGGGAGGGGGAGCCCAGGGCCTCTGT
GACCCCCCTCCTTTCTTTCCCCAAGCCCCCAGTTTATATTTAGCTGCCAAATAAGATTCTTGCA
GGCTCCCCCTTTTCTCTGGGGGGTTAGGGTGCTGTCCCCTCCCCTCTGTTTACATCTCCTACCC
CGCTGTTCGCATATTGCTGAGTTTTCTATTTTTGCAAAATAAAGTGATGGAAACTCAA

hide sequence

RefSeq Acc Id:

XM_008765785 ⟹ XP_008764007

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,367,833 - 133,390,296 (-)	NCBI
Rnor_6.0	7	143,840,739 - 143,863,180 (-)	NCBI

Sequence:

show sequence

AGAAAATATTTTCCGTGTCCCCGCCTGCGGAGTCAGTGTGCGGTTTGGGAGAAAATGTGTCGGA
TATTTTGGGGCGGTCACGTGGGCGGGCGGGCTCCGAGAGGCCCCGGGATTGTCCCAGCCTAGAG
CCGTGCCCCCCTGAAGCCCCCCATTACCGCGAGTCACTAACACCGCGGCGCTCCATCCCGGAGA
CCGCCCGACGCCGGGACCTCGGGGCTCTGCGGCCTTCCTTCCCCCGCCCTCCCCTCCAGTTTCT
ACCAGGTCCCTCACCTCAGCCTGGCCCAGTATGTAGAAGGAAATCTCTGTAGAGGCCAGAGGGA
CCCTTGGAGACCCATTGGACAGGCCAGGCAGGGTGGGCACGGAGCCTCCCAGGCCAGGGCAGTG
GGCATGGGCGGGGGCTGCAGCTGAAGATCACCCCCGCCCACGGCAGAGTACAAGGGATTCCCAC
GCTGCAGCTACCATGGCCACCAATAAGGAGCGACTCTTTGCGCCCAACGCCCTGGGGCCTGGAT
CTGGTTACCCAGGAGCAGGCTTCCCGTTCGCCTTCCCAGGTGCACTCAGAGGGTCACCGCCATT
TGAGATGCTGAGCCCCAGCTTCCGGGGCCTTGGCCAGCCTGACCTCCCCAAGGAGATGGCTTCT
CTCTCCGTGGAGACTCAGAGCACCAGCTCCGAGGAGATGGTGCCCAGCTCTCCCTCACCCCCAC
CACCTCCTCGGGTCTATAAGCCGTGCTTTGTATGCAACGACAAGTCTTCCGGCTACCACTATGG
GGTCAGCTCCTGCGAAGGCTGCAAGGGCTTCTTCAGACGCAGCATCCAGAAAAACATGGTGTAT
ACGTGTCACCGTGACAAAAACTGTATCATCAACAAGGTAACCAGGAATCGGTGCCAGTACTGCC
GGCTGCAAAAGTGTTTCGAAGTGGGCATGTCCAAGGAAGCTGTAAGGAATGACCGGAACAAGAA
GAAAAAGGAGGTAAAGGAAGAAGGCCCACCAGACAACTACGAACTGAGTCCACAGTTAGAGGAG
CTCATCACCAAGGTCAGCAAAGCCCACCAGGAGACTTTCCCCTCACTCTGCCAGCTGGGCAAGT
ACACCACGAACTCCAGCGCAGATCACCGGGTGCAACTGGACCTGGGGCTGTGGGACAAGTTCAG
TGAGCTGGCCACCAAATGCATCATCAAGATTGTGGAGTTTGCGAAGCGGCTGCCTGGTTTTACA
GGACTCAGCATTGCTGACCAGATCACGCTGCTCAAGGCCGCCTGCCTGGACATCCTAATGCTAC
GGATCTGTACAAGGTATACCCCAGAGCAAGACACCATGACATTCTCGGATGGGCTGACCCTGAA
CCGAACCCAGATGCACAATGCTGGCTTTGGGCCCCTTACAGACCTCGTCTTCGCCTTTGCGGGG
CAGCTCCTGCCCTTGGAGATGGATGACACGGAGACTGGGCTGCTTAGTGCTATCTGCCTCATCT
GTGGAGACCGAATGGACCTGGAAGAACCCGAGAAGGTGGACAAGCTGCAGGAGCCCCTGTTGGA
AGCCCTAAGGCTTTATGCCCGGCGACGGAGACCCAGCCAACCATACATGTTTCCAAGGATGCTC
ATGAAAATCACAGACCTCCGGGGCATCAGCACCAAGGGAGCAGAAAGAGCTATAACCCTCAAGA
TGGAGATTCCAGGCCCGATGCCCCCCCTGATCCGAGAGATGCTGGAGAACCCTGAGATGTTTGA
GGACGACTCCTCGAAGCCTGGCCCCCACCCCAAGGCTTCCAGTGAGGATGAAGCTCCAGGGAGC
CAGGGAAAACGGGGCCAAAGTCCCCAACCTGACCAGGGCCCCTGACCTACCCAACTGTGGGGTT
GGGCCCCAGGCAGCAGACTGACCATTTCCCAGATACCGCCAGTGACTGGGGGAGGACCTGCCCC
GCCCACTCCCCACCCTTTCAAGAGCTCGTTGTTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCA
TCCCTGTCCTGTTCTAACTGGCTCCCTCTACAGTCCCAAGGGACTGCCGCGCACCTACCCGAAG
AGCCGAGCCGGAGAAGGGGCTAGCCTGGGTCTAGACTCTAAAATCTCAGCACTGCCTTTCAGAT
TCAGGCCACAGGTTCCCCACGCAAGAGGAAGCCCCGCCTTCCCATAGCCCTTTCCTCTGCCAGG
TGCTTGGGCCTCTGGGAGCAAACAGGAACACTAGAGACCAAAAGGGGGGCCCTGGGGAGGGCTG
AGCCCACCCTTGCGCCCCACCCTGAGCGCCTGACGCCGCGTGATGAAACTGCCTCGCTCAGTGC
CCTCTGTGCCCCATCCTAATCCTCCTGCCAGGTGTAGGGGCAGGCTGGGGCCTGCATTTCTGGG
GTGGGGCCTGAGGGAGAAGGGAGAAATGTGAGCCCATTCTGTACCTCTGCTGAAGTACGGCACT
CATCCTGGGCCCTCCATTTTATAAGCCTCTCCCTTACTCCTGTCGCGTGCCTTGGCCTCCCGCC
CTCATAAACGCCATCAGGCAGGGCCCTCCTACACTACAGAGGGGCCAGGGGTCCCTCTCCTAGT
GCCTTCTACCCTTGACCCCCCCAGAGCAGCTTGGCCCCGGGGAGGGGAGATGCTGCTTAGCTGA
TCCCACCCTGACCCAGAGGAAGGCCTCTATTTATTTATTAGCTTTTGTTTACACCCTGGAATGA
CCCCTTCCTCCAGGGGTCTTGGGAGGGGGAGCCCAGGGCCTCTGTGACCCCCCTCCTTTCTTTC
CCCAAGCCCCCAGTTTATATTTAGCTGCCAAATAAGATTCTTGCAGGCTCCCCCTTTTCTCTGG
GGGGTTAGGGTGCTGTCCCCTCCCCTCTGTTTACATCTCCTACCCCGCTGTTCGCATATTGCTG
AGTTTTCTATTTTTGCAAAATAAAGTGATGGAAACTCAA

hide sequence

RefSeq Acc Id:

XM_039079887 ⟹ XP_038935815

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,367,833 - 133,390,296 (-)	NCBI

RefSeq Acc Id:

XM_039079888 ⟹ XP_038935816

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,372,101 - 133,379,431 (-)	NCBI

RefSeq Acc Id:

XM_039079889 ⟹ XP_038935817

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	133,367,833 - 133,378,952 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128721	(Get FASTA)	NCBI Sequence Viewer
	NP_001128722	(Get FASTA)	NCBI Sequence Viewer
	XP_008764006	(Get FASTA)	NCBI Sequence Viewer
	XP_008764007	(Get FASTA)	NCBI Sequence Viewer
	XP_038935815	(Get FASTA)	NCBI Sequence Viewer
	XP_038935816	(Get FASTA)	NCBI Sequence Viewer
	XP_038935817	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB34074	(Get FASTA)	NCBI Sequence Viewer
	EDL86852	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001128721 ⟸ NM_001135249
- Peptide Label:	isoform 1
- UniProtKB:	D3ZF61 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATNKERLFAPNALGPGSGYPGAGFPFAFPGALRGSPPFEMLSPSFRGLGQPDLPKEMASLSVE TQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHR DKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGPPDNYELSPQLEELITK VSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSI ADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP LEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKIT DLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSKPGPHPKASSEDEAPGSQGKR GQSPQPDQGP hide sequence

RefSeq Acc Id:	NP_001128722 ⟸ NM_001135250
- Peptide Label:	isoform 2
- UniProtKB:	D3ZWV0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLALPLPPPGAGHCGGRRGNGLRVLGVLAPSFSPSRVAMYDCMESFVPGPRRLYGAAGPGAGLL RRATGSSCFAGLESFAWAQPASLQSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYH YGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN KKKKEVKEEGPPDNYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDK FSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLT LNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPL LEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEM FEDDSSKPGPHPKASSEDEAPGSQGKRGQSPQPDQGP hide sequence

RefSeq Acc Id:	XP_008764007 ⟸ XM_008765785
- Peptide Label:	isoform X2
- UniProtKB:	D3ZF61 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATNKERLFAPNALGPGSGYPGAGFPFAFPGALRGSPPFEMLSPSFRGLGQPDLPKEMASLSVE TQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHR DKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGPPDNYELSPQLEELITK VSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSI ADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLP LEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKIT DLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSKPGPHPKASSEDEAPGSQGKR GQSPQPDQGP hide sequence

RefSeq Acc Id:

XP_008764006 ⟸ XM_008765784

- Peptide Label:

isoform X1

- Sequence:

show sequence

MCSDLQGCRESMITSIFPRASRVAMYDCMESFVPGPRRLYGAAGPGAGLLRRATGSSCFAGLES
FAWAQPASLQSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFR
RSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGPPDN
YELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE
FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPL
TDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPS
QPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSKPGPHPKA
SSEDEAPGSQGKRGQSPQPDQGP

hide sequence

RefSeq Acc Id:

ENSRNOP00000016801 ⟸ ENSRNOT00000016801

RefSeq Acc Id:

ENSRNOP00000017096 ⟸ ENSRNOT00000017096

RefSeq Acc Id:	XP_038935815 ⟸ XM_039079887
- Peptide Label:	isoform X2
- UniProtKB:	D3ZF61 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935817 ⟸ XM_039079889
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038935816 ⟸ XM_039079888
- Peptide Label:	isoform X3

Protein Domains

NR LBD Nuclear receptor

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZWV0-F1-model_v2	AlphaFold	D3ZWV0	1-485	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695694

Promoter ID:

EPDNEW_R6219

Type:

multiple initiation site

Name:

Rarg_1

Description:

retinoic acid receptor, gamma

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	143,852,084 - 143,852,144	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1583230	AgrOrtholog
BioCyc Gene	G2FUF-31944	BioCyc
Ensembl Genes	ENSRNOG00000012499	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000016801	ENTREZGENE
	ENSRNOP00000016801.4	UniProtKB/TrEMBL
	ENSRNOP00000017096	ENTREZGENE
	ENSRNOP00000017096.5	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016801	ENTREZGENE
	ENSRNOT00000016801.6	UniProtKB/TrEMBL
	ENSRNOT00000017096	ENTREZGENE
	ENSRNOT00000017096.8	UniProtKB/TrEMBL
Gene3D-CATH	1.10.565.10	UniProtKB/TrEMBL
	3.30.50.10	UniProtKB/TrEMBL
InterPro	NHR_like_domain	UniProtKB/TrEMBL
	Nucl_hrmn_rcpt_lig-bd_core	UniProtKB/TrEMBL
	Retinoic_acid_rcpt	UniProtKB/TrEMBL
	Str_hrmn_rcpt	UniProtKB/TrEMBL
	Znf_hrmn_rcpt	UniProtKB/TrEMBL
	Znf_NHR/GATA	UniProtKB/TrEMBL
KEGG Report	rno:685072	UniProtKB/TrEMBL
NCBI Gene	685072	ENTREZGENE
PANTHER	NUCLEAR HORMONE RECEPTOR	UniProtKB/TrEMBL
	RETINOIC ACID RECEPTOR GAMMA	UniProtKB/TrEMBL
Pfam	Hormone_recep	UniProtKB/TrEMBL
	zf-C4	UniProtKB/TrEMBL
PhenoGen	Rarg	PhenoGen
PRINTS	RETNOICACIDR	UniProtKB/TrEMBL
	STRDHORMONER	UniProtKB/TrEMBL
	STROIDFINGER	UniProtKB/TrEMBL
PROSITE	NR_LBD	UniProtKB/TrEMBL
	NUCLEAR_REC_DBD_1	UniProtKB/TrEMBL
	NUCLEAR_REC_DBD_2	UniProtKB/TrEMBL
SMART	HOLI	UniProtKB/TrEMBL
	ZnF_C4	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	Str_ncl_receptor	UniProtKB/TrEMBL
UniProt	D3ZF61	ENTREZGENE, UniProtKB/TrEMBL
	D3ZWV0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-06-15	Rarg	retinoic acid receptor, gamma	Rarg_mapped	retinoic acid receptor, gamma (mapped)	Data Merged	1643240	APPROVED
2008-12-03	Rarg	retinoic acid receptor, gamma	LOC685072	similar to Retinoic acid receptor gamma-A (RAR-gamma-A)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC685072	similar to Retinoic acid receptor gamma-A (RAR-gamma-A)			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-11-17	Rarg_mapped	retinoic acid receptor, gamma (mapped)			Symbol and Name updated	1556543	APPROVED
2002-06-10	Rarg	Retinoic acid receptor, gamma			Symbol and Name status set to approved	70586	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations