Tfcp2 (transcription factor CP2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tfcp2 (transcription factor CP2) Rattus norvegicus
Analyze
Symbol: Tfcp2
Name: transcription factor CP2
RGD ID: 1306738
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in mRNA transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of protein-containing complex. Predicted to be active in nucleus. Orthologous to human TFCP2 (transcription factor CP2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: alpha-globin transcription factor CP2; LOC315309; MGC187831; Tcfcp2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87133,495,577 - 133,537,799 (-)NCBIGRCr8
mRatBN7.27131,616,777 - 131,658,995 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7131,616,785 - 131,658,939 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7133,419,070 - 133,460,849 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07135,644,645 - 135,686,424 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07135,558,095 - 135,599,915 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07142,138,836 - 142,181,036 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,138,844 - 142,180,997 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07139,946,303 - 139,988,508 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47139,254,024 - 139,295,978 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17139,332,056 - 139,372,152 (-)NCBI
Celera7128,094,014 - 128,135,941 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO)
protein-containing complex  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. The Fe65 adaptor protein interacts through its PID1 domain with the transcription factor CP2/LSF/LBP1. Zambrano N, etal., J Biol Chem. 1998 Aug 7;273(32):20128-33.
Additional References at PubMed
PMID:8889548   PMID:11003662   PMID:12477932   PMID:15232220   PMID:15273251   PMID:16263792   PMID:18629613  


Genomics

Comparative Map Data
Tfcp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87133,495,577 - 133,537,799 (-)NCBIGRCr8
mRatBN7.27131,616,777 - 131,658,995 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7131,616,785 - 131,658,939 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7133,419,070 - 133,460,849 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07135,644,645 - 135,686,424 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07135,558,095 - 135,599,915 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07142,138,836 - 142,181,036 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,138,844 - 142,180,997 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07139,946,303 - 139,988,508 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47139,254,024 - 139,295,978 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17139,332,056 - 139,372,152 (-)NCBI
Celera7128,094,014 - 128,135,941 (-)NCBICelera
Cytogenetic Map7q36NCBI
TFCP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381251,093,656 - 51,173,135 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1251,093,656 - 51,173,135 (-)EnsemblGRCh38hg38GRCh38
GRCh371251,487,439 - 51,566,918 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361249,774,887 - 49,852,931 (-)NCBINCBI36Build 36hg18NCBI36
Build 341249,774,887 - 49,852,931NCBI
Celera1250,288,768 - 50,369,062 (-)NCBICelera
Cytogenetic Map12q13.12-q13.13NCBI
HuRef1248,519,794 - 48,599,541 (-)NCBIHuRef
CHM1_11251,453,744 - 51,533,155 (-)NCBICHM1_1
T2T-CHM13v2.01251,056,573 - 51,136,022 (-)NCBIT2T-CHM13v2.0
Tfcp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915100,395,083 - 100,449,896 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15100,395,893 - 100,449,889 (-)EnsemblGRCm39 Ensembl
GRCm3815100,497,781 - 100,552,014 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15100,498,012 - 100,552,008 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715100,333,227 - 100,382,378 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615100,330,830 - 100,379,981 (-)NCBIMGSCv36mm8
Celera15102,655,055 - 102,704,214 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.33NCBI
Tfcp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555471,604,461 - 1,675,856 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555471,608,631 - 1,675,331 (-)NCBIChiLan1.0ChiLan1.0
TFCP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21043,012,574 - 43,092,254 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11243,009,336 - 43,089,016 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01237,580,263 - 37,659,680 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11238,486,340 - 38,563,300 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1238,486,340 - 38,563,299 (+)Ensemblpanpan1.1panPan2
TFCP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,677,470 - 3,738,322 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,677,465 - 3,737,292 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2742,517,912 - 42,578,637 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,724,686 - 3,785,721 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl273,724,686 - 3,785,210 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,691,769 - 3,752,481 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0273,678,917 - 3,739,849 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02742,914,279 - 42,975,638 (-)NCBIUU_Cfam_GSD_1.0
Tfcp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494564,377,873 - 64,446,252 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365128,716,042 - 8,787,201 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365128,718,578 - 8,786,957 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TFCP2
(Sus scrofa - pig)		 No map positions available.
TFCP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11147,303,801 - 47,373,724 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1147,303,796 - 47,373,344 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037198,725,239 - 198,795,967 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tfcp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248161,082,794 - 1,137,091 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248161,082,788 - 1,137,096 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tfcp2
161 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:762
Count of miRNA genes:318
Interacting mature miRNAs:408
Transcripts:ENSRNOT00000037447
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat

Markers in Region
BF405593  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27131,617,278 - 131,617,481 (+)MAPPERmRatBN7.2
Rnor_6.07142,139,338 - 142,139,540NCBIRnor6.0
Rnor_5.07139,946,809 - 139,947,011UniSTSRnor5.0
RGSC_v3.47139,254,519 - 139,254,721UniSTSRGSC3.4
Celera7128,094,509 - 128,094,711UniSTS
RH 3.4 Map71076.9UniSTS
Cytogenetic Map7q36UniSTS
RH134575  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27131,627,768 - 131,627,948 (+)MAPPERmRatBN7.2
Rnor_6.07142,149,828 - 142,150,007NCBIRnor6.0
Rnor_5.07139,957,299 - 139,957,478UniSTSRnor5.0
RGSC_v3.47139,265,009 - 139,265,188UniSTSRGSC3.4
Celera7128,105,001 - 128,105,180UniSTS
RH 3.4 Map71052.6UniSTS
Cytogenetic Map7q36UniSTS
AI179648  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27131,616,799 - 131,616,986 (+)MAPPERmRatBN7.2
Rnor_6.07142,138,859 - 142,139,045NCBIRnor6.0
Rnor_5.07139,946,330 - 139,946,516UniSTSRnor5.0
RGSC_v3.47139,254,040 - 139,254,226UniSTSRGSC3.4
Celera7128,094,030 - 128,094,216UniSTS
RH 3.4 Map71076.3UniSTS
Cytogenetic Map7q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000037447   ⟹   ENSRNOP00000037251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7131,616,785 - 131,658,741 (-)Ensembl
Rnor_6.0 Ensembl7142,138,844 - 142,180,794 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087632   ⟹   ENSRNOP00000068740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7131,616,788 - 131,658,939 (-)Ensembl
Rnor_6.0 Ensembl7142,139,303 - 142,180,997 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117066   ⟹   ENSRNOP00000091135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7131,623,952 - 131,658,741 (-)Ensembl
RefSeq Acc Id: NM_001134714   ⟹   NP_001128186
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,495,577 - 133,537,531 (-)NCBI
mRatBN7.27131,616,784 - 131,658,741 (-)NCBI
Rnor_6.07142,138,843 - 142,180,794 (-)NCBI
Rnor_5.07139,946,303 - 139,988,508 (-)NCBI
RGSC_v3.47139,254,024 - 139,295,978 (-)RGD
Celera7128,094,014 - 128,135,941 (-)RGD
Sequence:
RefSeq Acc Id: XM_006242341   ⟹   XP_006242403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,495,577 - 133,537,799 (-)NCBI
mRatBN7.27131,616,777 - 131,658,995 (-)NCBI
Rnor_6.07142,138,836 - 142,181,036 (-)NCBI
Rnor_5.07139,946,303 - 139,988,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594895   ⟹   XP_017450384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,495,577 - 133,537,622 (-)NCBI
mRatBN7.27131,616,777 - 131,658,834 (-)NCBI
Rnor_6.07142,138,836 - 142,180,885 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594896   ⟹   XP_017450385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,495,577 - 133,537,770 (-)NCBI
mRatBN7.27131,616,777 - 131,658,995 (-)NCBI
Rnor_6.07142,138,836 - 142,181,036 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063263676   ⟹   XP_063119746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,506,683 - 133,537,623 (-)NCBI
RefSeq Acc Id: XR_010052986
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,504,039 - 133,537,622 (-)NCBI
RefSeq Acc Id: NP_001128186   ⟸   NM_001134714
- UniProtKB: G3V969 (UniProtKB/TrEMBL),   B4F788 (UniProtKB/TrEMBL),   A0A8I6AB07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242403   ⟸   XM_006242341
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTJ9 (UniProtKB/TrEMBL),   A6KCK2 (UniProtKB/TrEMBL),   A0A8I6AB07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450385   ⟸   XM_017594896
- Peptide Label: isoform X2
- UniProtKB: G3V969 (UniProtKB/TrEMBL),   B4F788 (UniProtKB/TrEMBL),   A0A8I6AB07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450384   ⟸   XM_017594895
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTJ9 (UniProtKB/TrEMBL),   A6KCK2 (UniProtKB/TrEMBL),   A0A8I6AB07 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068740   ⟸   ENSRNOT00000087632
Ensembl Acc Id: ENSRNOP00000037251   ⟸   ENSRNOT00000037447
Ensembl Acc Id: ENSRNOP00000091135   ⟸   ENSRNOT00000117066
RefSeq Acc Id: XP_063119746   ⟸   XM_063263676
- Peptide Label: isoform X3
Protein Domains
Grh/CP2 DB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JTJ9-F1-model_v2 AlphaFold A0A0G2JTJ9 1-501 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695660
Promoter ID:EPDNEW_R6183
Type:multiple initiation site
Name:Tfcp2_1
Description:transcription factor CP2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6184  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07142,180,773 - 142,180,833EPDNEW
RGD ID:13695670
Promoter ID:EPDNEW_R6184
Type:multiple initiation site
Name:Tfcp2_2
Description:transcription factor CP2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6183  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07142,180,983 - 142,181,043EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306738 AgrOrtholog
BioCyc Gene G2FUF-32018 BioCyc
Ensembl Genes ENSRNOG00000032395 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037447.7 UniProtKB/TrEMBL
  ENSRNOT00000087632.2 UniProtKB/TrEMBL
  ENSRNOT00000117066.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro CP2 UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
  SAM_3 UniProtKB/TrEMBL
  TF_CP2-like UniProtKB/TrEMBL
  TFCP2_SAM UniProtKB/TrEMBL
KEGG Report rno:315309 UniProtKB/TrEMBL
NCBI Gene 315309 ENTREZGENE
PANTHER ALPHA-GLOBIN TRANSCRIPTION FACTOR CP2 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR CP2 UniProtKB/TrEMBL
Pfam CP2 UniProtKB/TrEMBL
  SAM_3 UniProtKB/TrEMBL
PhenoGen Tfcp2 PhenoGen
PROSITE GRH_CP2_DB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032395 RatGTEx
Superfamily-SCOP SAM_homology UniProtKB/TrEMBL
UniProt A0A0G2JTJ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AB07 ENTREZGENE, UniProtKB/TrEMBL
  A6KCK2 ENTREZGENE, UniProtKB/TrEMBL
  B4F788 ENTREZGENE
  G3V969 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B4F788 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-16 Tfcp2  transcription factor CP2  Tcfcp2  transcription factor CP2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tcfcp2  transcription factor CP2   Tcfcp2_predicted  transcription factor CP2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Tcfcp2_predicted  transcription factor CP2 (predicted)      Symbol and Name status set to approved 70820 APPROVED