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Gene: Hdac10 (histone deacetylase 10) Rattus norvegicus

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Symbol:

Hdac10

Name:

histone deacetylase 10

RGD ID:

1305874

Description:

Predicted to enable histone deacetylase activity; histone deacetylase binding activity; and zinc ion binding activity. Involved in oligodendrocyte development. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of histone deacetylase complex. Orthologous to human HDAC10 (histone deacetylase 10); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

HD10; LOC362981; polyamine deacetylase HDAC10

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HDAC10 (histone deacetylase 10)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Hdac10 (histone deacetylase 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hdac10 (histone deacetylase 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HDAC10 (histone deacetylase 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HDAC10 (histone deacetylase 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hdac10 (histone deacetylase 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HDAC10 (histone deacetylase 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HDAC10 (histone deacetylase 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hdac10 (histone deacetylase 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	HDAC10 (histone deacetylase 10)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Hdac10 (histone deacetylase 10)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	hdac10 (histone deacetylase 10)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	HDA1	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	HDAC6	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	hda-10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	hda-5	Alliance	DIOPT (InParanoid\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	122,078,768 - 122,084,457 (-)	NCBI		GRCr8
mRatBN7.2	7	120,199,126 - 120,205,850 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	120,199,129 - 120,204,228 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	121,950,152 - 121,955,255 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	124,176,317 - 124,181,420 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	124,139,323 - 124,144,426 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	130,102,335 - 130,109,036 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	130,102,347 - 130,107,437 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	129,788,051 - 129,794,135 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	127,423,736 - 127,428,838 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	127,459,992 - 127,462,839 (-)	NCBI
Celera	7	116,673,021 - 116,678,123 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

chromosome 22q13 duplication syndrome (ISO)

congenital disorder of glycosylation Ig (ISO)

intellectual disability (ISO)

metachromatic leukodystrophy (ISO)

Phelan-McDermid syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,3'-diindolylmethane (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

6-propyl-2-thiouracil (EXP)

allethrin (EXP)

amitrole (EXP)

amphetamine (EXP)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bortezomib (ISO)

butanal (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

clofibric acid (EXP)

cobalt dichloride (EXP)

cocaine (EXP)

cyhalothrin (EXP)

cypermethrin (EXP)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

diethylstilbestrol (ISO)

fenvalerate (EXP)

hydrazine (ISO)

hypochlorous acid (ISO)

indometacin (ISO)

lead(0) (ISO)

levetiracetam (EXP)

methamphetamine (EXP)

methimazole (EXP)

methotrexate (ISO)

N-nitrosodiethylamine (EXP)

ozone (ISO)

paracetamol (ISO)

pentane-2,3-dione (EXP)

phenobarbital (EXP)

pyrethrins (EXP)

rotenone (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA repair (IEA)

epigenetic regulation of gene expression (IBA)

homologous recombination (IEA,ISO,ISS)

macroautophagy (IEA,ISO,ISS)

negative regulation of DNA-templated transcription (ISO)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

oligodendrocyte development (IEP)

polyamine deacetylation (ISO,ISS)

positive regulation of mismatch repair (IEA,ISO,ISS)

regulation of DNA-templated transcription (ISO)

spermidine deacetylation (IEA,ISO,ISS)

Cellular Component

cytoplasm (ISO)

cytosol (IEA,ISO)

histone deacetylase complex (IEA,ISO)

intracellular membrane-bounded organelle (ISO)

nucleoplasm (ISO)

nucleus (IEA,ISO)

Molecular Function

acetylputrescine deacetylase activity (IEA)

acetylspermidine deacetylase activity (IEA)

deacetylase activity (IBA,ISO,ISS)

enzyme binding (ISO)

histone deacetylase activity (IEA,ISO)

histone deacetylase binding (IEA,ISO)

protein binding (ISO)

protein lysine deacetylase activity (ISO,ISS)

zinc ion binding (ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Histone deacetylase 11 regulates oligodendrocyte-specific gene expression and cell development in OL-1 oligodendroglia cells.	Liu H, etal., Glia. 2009 Jan 1;57(1):1-12.
4.	Physical and functional HAT/HDAC interplay regulates protein acetylation balance.	Peserico A and Simone C, J Biomed Biotechnol. 2011;2011:371832. doi: 10.1155/2011/371832. Epub 2010 Dec 5.
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation
9.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:11726666	PMID:11739383	PMID:11861901	PMID:15489334	PMID:17172643	PMID:21247901	PMID:23801752	PMID:26221039	PMID:28516954	PMID:32112918	PMID:32360748

Genomics

Comparative Map Data

Hdac10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	122,078,768 - 122,084,457 (-)	NCBI		GRCr8
mRatBN7.2	7	120,199,126 - 120,205,850 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	120,199,129 - 120,204,228 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	121,950,152 - 121,955,255 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	124,176,317 - 124,181,420 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	124,139,323 - 124,144,426 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	130,102,335 - 130,109,036 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	130,102,347 - 130,107,437 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	129,788,051 - 129,794,135 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	127,423,736 - 127,428,838 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	127,459,992 - 127,462,839 (-)	NCBI
Celera	7	116,673,021 - 116,678,123 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

HDAC10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	50,245,183 - 50,251,265 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	50,245,183 - 50,251,405 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	50,683,612 - 50,689,694 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	49,025,739 - 49,031,941 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	48,986,071 - 48,992,271	NCBI
Celera	22	34,558,514 - 34,564,737 (-)	NCBI		Celera
Cytogenetic Map	22	q13.33	NCBI
HuRef	22	33,581,335 - 33,587,801 (-)	NCBI		HuRef
CHM1_1	22	50,642,365 - 50,648,588 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	50,752,185 - 50,758,268 (-)	NCBI		T2T-CHM13v2.0

Hdac10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	89,007,506 - 89,012,903 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	89,007,510 - 89,012,903 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	89,123,303 - 89,128,700 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	89,123,307 - 89,128,700 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	88,953,733 - 88,959,130 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	88,951,071 - 88,956,393 (-)	NCBI		MGSCv36	mm8
Celera	15	91,251,865 - 91,257,263 (-)	NCBI		Celera
Cytogenetic Map	15	E3	NCBI
cM Map	15	44.64	NCBI

Hdac10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	33,272,714 - 33,277,686 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	33,272,600 - 33,277,893 (-)	NCBI	ChiLan1.0	ChiLan1.0

HDAC10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	60,150,932 - 60,158,556 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	62,837,088 - 62,844,697 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	30,473,753 - 30,481,369 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	49,473,369 - 49,479,251 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	49,473,369 - 49,479,216 (-)	Ensembl	panpan1.1		panPan2

HDAC10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	16,996,307 - 17,001,365 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	16,995,762 - 17,078,262 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	16,974,507 - 16,979,565 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	17,723,533 - 17,728,591 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	17,722,764 - 17,728,591 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	17,447,560 - 17,452,618 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	17,770,649 - 17,775,707 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	17,902,859 - 17,907,917 (+)	NCBI		UU_Cfam_GSD_1.0

Hdac10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	562,006 - 567,709 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936629	562,022 - 567,822 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936629	562,038 - 567,709 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HDAC10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	439,808 - 445,334 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	439,142 - 445,337 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	110,662,633 - 110,668,163 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HDAC10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	32,735,091 - 32,741,200 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	32,735,406 - 32,740,817 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	92,613,492 - 92,620,124 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hdac10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624752	518,563 - 524,497 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Hdac10
18 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	99
Count of miRNA genes:	85
Interacting mature miRNAs:	90
Transcripts:	ENSRNOT00000055865
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	119513385	135012528	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	111182207	135012528	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	80221299	124373579	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	102297359	133492884	Rat
2298475	Eau6	Experimental allergic uveoretinitis QTL 6		0.0029	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	7	84257275	129257275	Rat
71114	Niddm14	Non-insulin dependent diabetes mellitus QTL 14	4.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	84257275	129257275	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	91412594	129807172	Rat
1357339	Stl14	Serum triglyceride level QTL 14	3.45	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	112729683	133492707	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	73829340	130221005	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	83153392	128153392	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	81737938	126737938	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat
631663	Bw6	Body weight QTL 6	3.4		body mass (VT:0001259)	body weight (CMO:0000012)	7	111075573	134976056	Rat
1558655	Swd4	Spike wave discharge measurement QTL 4	3.68	0.0002	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge severity grade (CMO:0001988)	7	86983365	131983365	Rat
631201	Panci1	Pancreas inflammation QTL 1	0	0.001	pancreas integrity trait (VT:0010560)	percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)	7	116677189	127103496	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	80221299	125221299	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	112308254	133492884	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
1582240	Sffal1	Serum free fatty acids level QTL 1	3.4	0.0021	blood free fatty acid amount (VT:0001553)	serum free fatty acids level (CMO:0000547)	7	116677010	124049952	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat

Markers in Region

AW548891

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	120,199,630 - 120,199,757 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	130,102,840 - 130,102,966	NCBI	Rnor6.0
Rnor_5.0	7	129,788,629 - 129,788,755	UniSTS	Rnor5.0
RGSC_v3.4	7	127,424,241 - 127,424,367	UniSTS	RGSC3.4
Celera	7	116,673,526 - 116,673,652	UniSTS
Cytogenetic Map	7	q34	UniSTS

RH139917

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	120,200,013 - 120,200,224 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	130,103,223 - 130,103,433	NCBI	Rnor6.0
Rnor_5.0	7	129,789,012 - 129,789,222	UniSTS	Rnor5.0
RGSC_v3.4	7	127,424,624 - 127,424,834	UniSTS	RGSC3.4
Celera	7	116,673,909 - 116,674,119	UniSTS
RH 3.4 Map	7	958.3	UniSTS
Cytogenetic Map	7	q34	UniSTS

RH128844

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	120,206,034 - 120,206,219 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	130,109,244 - 130,109,428	NCBI	Rnor6.0
Rnor_5.0	7	129,795,033 - 129,795,217	UniSTS	Rnor5.0
RGSC_v3.4	7	127,430,645 - 127,430,829	UniSTS	RGSC3.4
Celera	7	116,679,930 - 116,680,114	UniSTS
RH 3.4 Map	7	958.5	UniSTS
Cytogenetic Map	7	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001035000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001414972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC118923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC092573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000055865 ⟹ ENSRNOP00000052717

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	120,199,129 - 120,204,228 (-)	Ensembl
Rnor_6.0 Ensembl	7	130,102,347 - 130,107,437 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113351 ⟹ ENSRNOP00000093025

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	120,199,129 - 120,204,228 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118109 ⟹ ENSRNOP00000088972

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	120,199,130 - 120,204,221 (-)	Ensembl

RefSeq Acc Id:

NM_001035000 ⟹ NP_001030172

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,078,768 - 122,083,846 (-)	NCBI
mRatBN7.2	7	120,199,126 - 120,204,204 (-)	NCBI
Rnor_6.0	7	130,102,335 - 130,107,437 (-)	NCBI
Rnor_5.0	7	129,788,051 - 129,794,135 (-)	NCBI
RGSC_v3.4	7	127,423,736 - 127,428,838 (-)	RGD
Celera	7	116,673,021 - 116,678,123 (-)	RGD

Sequence:

show sequence

GGCGTTTGGAGCCACGCTTAGCTCAGTTTCCAGCGGTTAGCTTCTGACTATCGGGCGGGCTTGA
GCCGGGACCTGGTCTTGGGGTGGTTCCCTCTTGCCCAGGTCCAGTGTCCACTACCCGGCTCTGT
CCCAAGCGAGGGCTGTTTACGTGCATACTGTTAAGTGAGAGTGGGCAGTGCAACCACCTGCCGG
CAGAGGGCGTGTTGAGTTAGAGCGGATCAAAGTGGCCATGGGCACAGCACTTGTGTACCACGAG
GACATGACAGCCACCCGACTGCTCTGGGATGACCCTGAGTGCGAAATTGAGTGCCCAGAGCGCC
TGACAGCTGCCTTGGATGGCCTGCGGCAGCGTGGCCTGGAAGAAAGGTGCCAGTGTTTGTCAGT
TTGTGAGGCATCAGAGGAAGAGTTGGGACTGGTGCACAGCCCAGAATATATAGCCCTGGTGCAG
AAGACCCAGACCCTGGACAAAGAGGAGCTCCACACACTGTCTAAGCAGTATGATGCTGTCTACT
TCCACCCGGATACTTTTCACTGTGCAAGGCTGGCAGCGGGGGCTGCACTGCGGCTGGTGGATGC
TGTGCTAACAGGAGCTGTGCACAATGGCGTTGCCCTGGTGAGGCCTCCAGGGCACCATAGTCAG
AGGGCGGCTGCCAATGGCTTCTGTGTGTTCAACAACGTGGCTATAGCAGCCAGACATGCCAAGC
AGAAATACGGGCTGCAGAGGATTCTCATTGTCGACTGGGATGTCCACCATGGCCAGGGCATCCA
GTATATCTTTGAGGATGACCCCAGTGTCCTTTATTTCTCCTGGCACCGCTATGAGCATGGAAAC
TTCTGGCCGTTCCTCCCAGAGTCTGATGCAGACACAGTTGGCCGAGGGCGGGGCCAAGGTTTCA
CTGTCAATTTGCCCTGGAACCAGGTTGGGATGGGAAATGCTGACTATTTGGCTGCCTTCCTGCA
TGTGCTGCTCCCGTTGGCCTTTGAGTTTGACCCTGAGCTGGTGCTGGTGTCAGCTGGATTCGAC
TCTGCTATTGGGGACCCTGAGGGGCAGATGCAGGCCACCCCTGAGTGCTTTGCCCATCTTACAC
AGCTGCTACAGGTGCTGGCTGGTGGCCGGATTTGTGCTGTGTTGGAGTGCCCTGGAGTCTATCC
AGAGTGTTCGGACAGCCCAGACCCCTCACTGGACAAGCCTCCAACAAATTCCACATGTACAGTA
GCAGAGGATTCACTGAGCCCCTGCCTGGACAGACCGTGCCACCGCCCTACGCCCCCAATCTGCA
TAGCTGTTGCCTTGGCTGTGTCAGGTGCTGCCCTGGACTTACCTCCTGGAGTGCTCCATCAAGA
AGGGTCAGCCTTGAGGGAGGAGACCGAGGCATGGGCCAGGCTTCACAAGTCCCAGTTTCAGGAC
GACGATCTTGCCGCACTGGGGAAGAGTCTGTGCCTCTTAGATGGAATCCTGGATGGGCAGATAA
GAAGTGCTATAGCAACCACAACTGCCCTTGCCACAGCAGCAACTTTGGGTGTGCTCATTCAGCG
ATGTGTAGCCCATAGAGGTCAGAGGAGAATTCTGTGGCTCAGCATCCGGGGCAAGGAGGCAGAC
ATCTGGTCCATGTTCCACTTCTCCACTCCACTGCCACAGACAACTGGAGGGTTTCTGAGCTTCA
TCTTGGGTCTGGTACTGCCCTTAGCCTATGGCTTCCAGCCTGACATGGTGTTGATGGCCCTGGG
GCCCGCCCATGGCCTGCAGAATGCCCAAGCTGCTCTCTTGGCTGCAATGCTTCGGAGCCCAGTA
GGGGGCCGAATTCTAGCTTTAGTGGAAGAGGAATCCATACTCCAGCTTGCAAGAACCCTGGCAC
AGGTATTGCATGGAGAAACACCTCCCAGTCTGGGCCCTTTCTCGATGGCATCTCCAGAGGAGAT
CCAGGCCCTTATGTTTCTAAAAGCTCAGCTGGAGCCTCGGTGGAAGTTGCTGCAGGTGGCTGCT
CCTCCACCATAACCGTGATCGCCAGTCGCTTGAAATCGGCCAAAGAGGGCGATTCCTAGTTGAA
GAGCACACTCTGGCGCCCATGGCCCGAGACCTACGTCCCGTCTGTGGCCCAGCTTCCTACCTCC
AGAACAATAAACATCGGCTAAACAGAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001414972 ⟹ NP_001401901

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,078,768 - 122,083,846 (-)	NCBI
mRatBN7.2	7	120,199,126 - 120,204,204 (-)	NCBI

RefSeq Acc Id:

XM_006242219 ⟹ XP_006242281

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,078,772 - 122,084,457 (-)	NCBI
mRatBN7.2	7	120,199,126 - 120,205,850 (-)	NCBI
Rnor_6.0	7	130,102,339 - 130,109,036 (-)	NCBI
Rnor_5.0	7	129,788,051 - 129,794,135 (-)	NCBI

Sequence:

show sequence

AATTAGGGCTTGCTCCCCTCTCTTCTTGAATGACTGTACTCTTAAGGCTTAGAGGCTGAGCAGG
GAGTCTGGAGTCTGATGCAAGGGCAGATGATGGGATAGATGGTGCTAGGACCCAGAGAAACGGA
TGCTCCCTTCTTTCTGAGTTTGCAACCTTTGTCTTCCAACTCAACATTTGTCTTCCAATGGCCC
AAACGTCTAGTGAGGAAGGTCTTAGAGGCTCTCTGAGACCCAGAGAGGTAGGTTCTACTCTCTG
ACCAGCAGCCTCCCTGAACCTAACTGTCATCCAAGCCATTAGACACAAACTGCCTGGTCAGAGG
CCATACTTGGGCTGGTTAGATGGCCCACGTTCTTCCCCACGTCCCAAGGACAGGTGCCACAGGG
CAGGTCATAAGGGTAAGGCCTTTCATTTCCCTCATTTGGCAAGTTCTGGGCAAATACACTTTGC
CTGGTCTAATCTGGTCAGAGAAGCTGCTATGATCACAGTCCCTCTGCCTGAGCACCCTTGTGAT
AACCATGGTCTGAGATTTCAAATACTTCACCCAATTATGGGGGTGTGGCTCACATGCCCTACCC
CACAAATACACATAATCCAGAGTGATCAGTCATGAGTGTCCTGAGTTCCTCTGCTTGATGCCTT
TGGCCTTTAGAAGATGGAGAAGCCTTAGGTTTCTCCAGAACCTGGGCCTGAACTCCCAACTCCT
GAGTGTGCAGTGGGCACCTACTCCTAACCACTCCAGGGCTCTTTGGTTTCCCCTGTACATGATA
GTTGTGTGTGTTCCTATCATAGATGTCAGTGGCAGCCTTGCTCCCTTCCCCCTCATCATCCTGA
GGGTGTGTCTGGTCCCCTCTCCCCATCTTTGGGCATCTTGCTTTGGAAGCATGATGGGACACGT
CTGTAATCCCAGCACTCACTTTCCAACTGGAGACAAGCCTGGGCTATGGAACAGACTACAAATA
TGCACAGCCTTAGTTCATGTTTGAGCTCATGTCTGCTTTGCCTCCTTTCCAAGGCCCCCTCCTC
TTCCTCACCCTTCCTTGCTCAGAACCCTCTGCCCTTCCTAACCTCACACTGGGCTGCAGTTTTC
CTGGCTGGCCTGGCGTCTTACATAACCCTTCTATTCCAGTGGCCTCTTGTTCACCTGTGGTCTT
TCCATGGAAGTCCCTTCTGGAAGTTCCGTGCCTTGATCCAGCCCAGGCTAGCCCCTGCATGCGC
TCACATACACACCCTGCTCACTTCCCTCCTCTCCATCCTTCACCCCAGGAGCAGGCAAATTGGT
TGTGGTTGACAGTTGGCATATCAGGGTAGACTAGGAGGATGCTGGGGACAAGACGGGAGCATAA
CTGTAGCTGCAGCGATGGCCTGAGAACAAGCAGCCCTGTCTTCCCACCCTTTTCAAGAGAGACA
CTGGAGGCGGCACTGGTTGCAGGATCCGTGCCACACGTTGTTGGCGGTGGCACAGCAGCTGAAG
CCCCTGAGAGAGATACCAGATCCAGAGACGAGGGCGAAATCCTAGCGAAGCTCAGCCTTCTGCT
TTACTCCACCCTAATCTCGCCTGGGGGCGGGACGGAGCCTGTAAAAGAGGAAGCCGGAAGTTAG
GCGTTTGGAGCCACGCTTAGCTCAGTTTCCAGCGGTTAGCTTCTGACTATCGGGCGGGCTTGAG
CCGGGACCTGGTCTTGGGGTGGTTCCCTCTTGCCCAGGTCCAGTGTCCACTACCCGGCTCTGTC
CCAAGCGAGGGCTGTTTACGTGCATACTGTTAAGTGAGAGTGGGCAGTGCAACCACCTGCCGGC
AGAGGGCGTGTTGAGTTAGAGCGGATCAAAGTGGCCATGGGCACAGCACTTGTGTACCACGAGG
ACATGACAGCCACCCGACTGCTCTGGGATGACCCTGAGTGCGAAATTGAGTGCCCAGAGCGCCT
GACAGCTGCCTTGGATGGCCTGCGGCAGCGTGGCCTGGAAGAAAGGTGCCAGTGTTTGTCAGTT
TGTGAGGCATCAGAGGAAGAGTTGGGACTGGTGCACAGCCCAGAATATATAGCCCTGGTGCAGA
AGACCCAGACCCTGGACAAAGAGGAGCTCCACACACTGTCTAAGCAGTATGATGCTGTCTACTT
CCACCCGGATACTTTTCACTGTGCAAGGCTGGCAGCGGGGGCTGCACTGCGGCTGGTGGATGCT
GTGCTAACAGGAGCTGTGCACAATGGCGTTGCCCTGGTGAGGCCTCCAGGGCACCATAGTCAGA
GGGCGGCTGCCAATGGCTTCTGTGTGTTCAACAACGTGGCTATAGCAGCCAGACATGCCAAGCA
GAAATACGGGCTGCAGAGGATTCTCATTGTCGACTGGGATGTCCACCATGGCCAGGGCATCCAG
TATATCTTTGAGGATGACCCCAGTGTCCTTTATTTCTCCTGGCACCGCTATGAGCATGGAAACT
TCTGGCCGTTCCTCCCAGAGTCTGATGCAGACACAGTTGGCCGAGGGCGGGGCCAAGGTTTCAC
TGTCAATTTGCCCTGGAACCAGGTTGGGATGGGAAATGCTGACTATTTGGCTGCCTTCCTGCAT
GTGCTGCTCCCGTTGGCCTTTGAGTTTGACCCTGAGCTGGTGCTGGTGTCAGCTGGATTCGACT
CTGCTATTGGGGACCCTGAGGGGCAGATGCAGGCCACCCCTGAGTGCTTTGCCCATCTTACACA
GCTGCTACAGGTGCTGGCTGGTGGCCGGATTTGTGCTGTGTTGGAGGGTGGATACCACTTAGAG
TCCCTAGCACAGTCAGTGTGCATGATGGTGCAGACATTGCTTGGTGACCCCACACCTCCCCTTC
CTGGGCTCATGGTGCCATGTCAGAGTGCCCTGGAGTCTATCCAGAGTGTTCGGACAGCCCAGAC
CCCTCACTGGACAAGCCTCCAACAAAACGTGGCCCCAGTTCTGAGTTCCAGCACCCACTCTCCT
GAAGGGAGCTCTCTGCCTGTGCTTGCTGACAGTTCCACATGTACAGTAGCAGAGGATTCACTGA
GCCCCTGCCTGGACAGACCGTGCCACCGCCCTACGCCCCCAATCTGCATAGCTGTTGCCTTGGC
TGTGTCAGGTGCTGCCCTGGACTTACCTCCTGGAGTGCTCCATCAAGAAGGGTCAGCCTTGAGG
GAGGAGACCGAGGCATGGGCCAGGCTTCACAAGTCCCAGTTTCAGGACGACGATCTTGCCGCAC
TGGGGAAGAGTCTGTGCCTCTTAGATGGAATCCTGGATGGGCAGATAAGAAGTGCTATAGCAAC
CACAACTGCCCTTGCCACAGCAGCAACTTTGGGTGTGCTCATTCAGCGATGTGTAGCCCATAGA
GGTCAGAGGAGAATTCTGTGGCTCAGCATCCGGGGCAAGGAGGCAGACATCTGGTCCATGTTCC
ACTTCTCCACTCCACTGCCACAGACAACTGGAGGGTTTCTGAGCTTCATCTTGGGTCTGGTACT
GCCCTTAGCCTATGGCTTCCAGCCTGACATGGTGTTGATGGCCCTGGGGCCCGCCCATGGCCTG
CAGAATGCCCAAGCTGCTCTCTTGGCTGCAATGCTTCGGAGCCCAGTAGGGGGCCGAATTCTAG
CTTTAGTGGAAGAGGAATCCATACTCCAGCTTGCAAGAACCCTGGCACAGGTATTGCATGGAGA
AACACCTCCCAGTCTGGGCCCTTTCTCGATGGCATCTCCAGAGGAGATCCAGGCCCTTATGTTT
CTAAAAGCTCAGCTGGAGCCTCGGTGGAAGTTGCTGCAGGTGGCTGCTCCTCCACCATAACCGT
GATCGCCAGTCGCTTGAAATCGGCCAAAGAGGGCGATTCCTAGTTGAAGAGCACACTCTGGCGC
CCATGGCCCGAGACCTACGTCCCGTCTGTGGCCCAGCTTCCTACCTCCAGAACAATAAACATCG
GCTAAACAGAA

hide sequence

RefSeq Acc Id:

XM_039079624 ⟹ XP_038935552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,078,772 - 122,084,457 (-)	NCBI
mRatBN7.2	7	120,199,126 - 120,205,850 (-)	NCBI

RefSeq Acc Id:

XM_039079625 ⟹ XP_038935553

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,078,772 - 122,084,457 (-)	NCBI
mRatBN7.2	7	120,199,126 - 120,205,850 (-)	NCBI

RefSeq Acc Id:

XM_039079626 ⟹ XP_038935554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,078,772 - 122,082,598 (-)	NCBI
mRatBN7.2	7	120,199,126 - 120,202,944 (-)	NCBI

RefSeq Acc Id:

XM_039079627 ⟹ XP_038935555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,078,772 - 122,082,689 (-)	NCBI
mRatBN7.2	7	120,199,126 - 120,203,048 (-)	NCBI

RefSeq Acc Id:

XM_039079628 ⟹ XP_038935556

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,078,772 - 122,082,598 (-)	NCBI
mRatBN7.2	7	120,199,126 - 120,202,944 (-)	NCBI

RefSeq Acc Id:

XM_039079629 ⟹ XP_038935557

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,078,772 - 122,082,598 (-)	NCBI
mRatBN7.2	7	120,199,126 - 120,202,944 (-)	NCBI

RefSeq Acc Id:

XM_039079630 ⟹ XP_038935558

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,078,772 - 122,082,598 (-)	NCBI
mRatBN7.2	7	120,199,126 - 120,202,944 (-)	NCBI

RefSeq Acc Id:

XM_039079631 ⟹ XP_038935559

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,078,772 - 122,082,598 (-)	NCBI
mRatBN7.2	7	120,199,126 - 120,202,944 (-)	NCBI

RefSeq Acc Id:

XM_039079632 ⟹ XP_038935560

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,078,772 - 122,082,042 (-)	NCBI
mRatBN7.2	7	120,199,126 - 120,202,402 (-)	NCBI

RefSeq Acc Id:

XM_039079633 ⟹ XP_038935561

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,080,701 - 122,084,457 (-)	NCBI
mRatBN7.2	7	120,201,049 - 120,205,850 (-)	NCBI

RefSeq Acc Id:

XM_039079634 ⟹ XP_038935562

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	122,080,749 - 122,084,457 (-)	NCBI
mRatBN7.2	7	120,201,107 - 120,205,850 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001030172	(Get FASTA)	NCBI Sequence Viewer
	NP_001401901	(Get FASTA)	NCBI Sequence Viewer
	XP_006242281	(Get FASTA)	NCBI Sequence Viewer
	XP_038935552	(Get FASTA)	NCBI Sequence Viewer
	XP_038935553	(Get FASTA)	NCBI Sequence Viewer
	XP_038935554	(Get FASTA)	NCBI Sequence Viewer
	XP_038935555	(Get FASTA)	NCBI Sequence Viewer
	XP_038935556	(Get FASTA)	NCBI Sequence Viewer
	XP_038935557	(Get FASTA)	NCBI Sequence Viewer
	XP_038935558	(Get FASTA)	NCBI Sequence Viewer
	XP_038935559	(Get FASTA)	NCBI Sequence Viewer
	XP_038935560	(Get FASTA)	NCBI Sequence Viewer
	XP_038935561	(Get FASTA)	NCBI Sequence Viewer
	XP_038935562	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92573	(Get FASTA)	NCBI Sequence Viewer
	EDL76539	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000052717.2
	ENSRNOP00000088972.1
	ENSRNOP00000093025.1
GenBank Protein	Q569C4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001030172 ⟸ NM_001035000
- Peptide Label:	isoform 2
- UniProtKB:	Q569C4 (UniProtKB/Swiss-Prot), A0A8I6AHE1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGTALVYHEDMTATRLLWDDPECEIECPERLTAALDGLRQRGLEERCQCLSVCEASEEELGLVH SPEYIALVQKTQTLDKEELHTLSKQYDAVYFHPDTFHCARLAAGAALRLVDAVLTGAVHNGVAL VRPPGHHSQRAAANGFCVFNNVAIAARHAKQKYGLQRILIVDWDVHHGQGIQYIFEDDPSVLYF SWHRYEHGNFWPFLPESDADTVGRGRGQGFTVNLPWNQVGMGNADYLAAFLHVLLPLAFEFDPE LVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRICAVLECPGVYPECSDSPDPSLDK PPTNSTCTVAEDSLSPCLDRPCHRPTPPICIAVALAVSGAALDLPPGVLHQEGSALREETEAWA RLHKSQFQDDDLAALGKSLCLLDGILDGQIRSAIATTTALATAATLGVLIQRCVAHRGQRRILW LSIRGKEADIWSMFHFSTPLPQTTGGFLSFILGLVLPLAYGFQPDMVLMALGPAHGLQNAQAAL LAAMLRSPVGGRILALVEEESILQLARTLAQVLHGETPPSLGPFSMASPEEIQALMFLKAQLEP RWKLLQVAAPPP hide sequence

RefSeq Acc Id:	XP_006242281 ⟸ XM_006242219
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AHE1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGTALVYHEDMTATRLLWDDPECEIECPERLTAALDGLRQRGLEERCQCLSVCEASEEELGLVH SPEYIALVQKTQTLDKEELHTLSKQYDAVYFHPDTFHCARLAAGAALRLVDAVLTGAVHNGVAL VRPPGHHSQRAAANGFCVFNNVAIAARHAKQKYGLQRILIVDWDVHHGQGIQYIFEDDPSVLYF SWHRYEHGNFWPFLPESDADTVGRGRGQGFTVNLPWNQVGMGNADYLAAFLHVLLPLAFEFDPE LVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRICAVLEGGYHLESLAQSVCMMVQT LLGDPTPPLPGLMVPCQSALESIQSVRTAQTPHWTSLQQNVAPVLSSSTHSPEGSSLPVLADSS TCTVAEDSLSPCLDRPCHRPTPPICIAVALAVSGAALDLPPGVLHQEGSALREETEAWARLHKS QFQDDDLAALGKSLCLLDGILDGQIRSAIATTTALATAATLGVLIQRCVAHRGQRRILWLSIRG KEADIWSMFHFSTPLPQTTGGFLSFILGLVLPLAYGFQPDMVLMALGPAHGLQNAQAALLAAML RSPVGGRILALVEEESILQLARTLAQVLHGETPPSLGPFSMASPEEIQALMFLKAQLEPRWKLL QVAAPPP hide sequence

Ensembl Acc Id:

ENSRNOP00000052717 ⟸ ENSRNOT00000055865

RefSeq Acc Id:	XP_038935553 ⟸ XM_039079625
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AHE1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935552 ⟸ XM_039079624
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AHE1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935555 ⟸ XM_039079627
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038935556 ⟸ XM_039079628
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038935559 ⟸ XM_039079631
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038935554 ⟸ XM_039079626
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038935558 ⟸ XM_039079630
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038935557 ⟸ XM_039079629
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038935560 ⟸ XM_039079632
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038935561 ⟸ XM_039079633
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038935562 ⟸ XM_039079634
- Peptide Label:	isoform X9

Ensembl Acc Id:

ENSRNOP00000093025 ⟸ ENSRNOT00000113351

Ensembl Acc Id:

ENSRNOP00000088972 ⟸ ENSRNOT00000118109

RefSeq Acc Id:	NP_001401901 ⟸ NM_001414972
- Peptide Label:	isoform 1
- UniProtKB:	A0A8I6A775 (UniProtKB/TrEMBL), A6K7J6 (UniProtKB/TrEMBL), A0A8I6AHE1 (UniProtKB/TrEMBL)

Protein Domains

Histone deacetylase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q569C4-F1-model_v2	AlphaFold	Q569C4	1-588	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695578

Promoter ID:

EPDNEW_R6103

Type:

initiation region

Name:

Hdac10_1

Description:

histone deacetylase 10

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	130,107,413 - 130,107,473	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305874	AgrOrtholog
BioCyc Gene	G2FUF-32462	BioCyc
Ensembl Genes	ENSRNOG00000031915	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000055865.4	UniProtKB/Swiss-Prot
	ENSRNOT00000113351.1	UniProtKB/TrEMBL
	ENSRNOT00000118109.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.800.20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7323327	IMAGE-MGC_LOAD
InterPro	HDAC_PDAC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	His_deacetylse	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	His_deacetylse_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	His_deacetylse_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ureohydrolase_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:362981	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:108767	IMAGE-MGC_LOAD
NCBI Gene	362981	ENTREZGENE
PANTHER	HISTONE DEACETYLASE HDAC1-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	POLYAMINE DEACETYLASE HDAC10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Hist_deacetyl	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Hdac10	PhenoGen
PRINTS	HDASUPER	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000031915	RatGTEx
Superfamily-SCOP	SSF52768	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6A775	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AHE1	ENTREZGENE, UniProtKB/TrEMBL
	A6K7J6	ENTREZGENE, UniProtKB/TrEMBL
	HDA10_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Hdac10	histone deacetylase 10	Hdac10_predicted	histone deacetylase 10 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Hdac10_predicted	histone deacetylase 10 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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