Slc38a4 (solute carrier family 38, member 4) - Rat Genome Database

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Gene: Slc38a4 (solute carrier family 38, member 4) Rattus norvegicus
Analyze
Symbol: Slc38a4
Name: solute carrier family 38, member 4
RGD ID: 621836
Description: Enables neutral L-amino acid:sodium symporter activity. Involved in neutral amino acid transport. Predicted to be located in microvillus membrane. Orthologous to human SLC38A4 (solute carrier family 38 member 4); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; INTERACTS WITH (+)-schisandrin B; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: amino acid transport system A3; amino acid transporter A3; Ata3; Na(+)-coupled neutral amino acid transporter 4; sodium-coupled neutral amino acid transporter 4; solute carrier family 38 member 4; system A amino acid transporter 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87130,022,039 - 130,082,169 (-)NCBIGRCr8
mRatBN7.27128,142,866 - 128,203,000 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7128,144,807 - 128,202,995 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7129,943,266 - 130,001,005 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07132,168,810 - 132,226,543 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07132,084,330 - 132,142,464 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07138,459,576 - 138,512,952 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7138,459,504 - 138,512,952 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07138,083,492 - 138,121,200 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47135,693,013 - 135,750,703 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17135,769,452 - 135,827,140 (-)NCBI
Celera7124,640,023 - 124,696,672 (-)NCBICelera
Cytogenetic Map7q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chromium(6+)  (ISO)
ciguatoxin CTX1B  (ISO)
cobalt dichloride  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
Diallyl sulfide  (ISO)
dicrotophos  (ISO)
Didecyldimethylammonium  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP,ISO)
flavonoids  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fructose  (ISO)
glucose  (ISO)
glycidol  (EXP)
graphite  (EXP)
hydrogen chloride  (ISO)
kojic acid  (ISO)
manganese(II) chloride  (EXP)
methimazole  (EXP)
methotrexate  (ISO)
monosodium L-glutamate  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
nitrofen  (EXP)
O-methyleugenol  (ISO)
oxycodone  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
silicon dioxide  (ISO)
simvastatin  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
testosterone  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
triazines  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
Triptolide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Structure and function of ATA3, a new subtype of amino acid transport system A, primarily expressed in the liver and skeletal muscle. Sugawara M, etal., Biochim Biophys Acta 2000 Dec 20;1509(1-2):7-13.
Additional References at PubMed
PMID:12477932   PMID:15489334  


Genomics

Comparative Map Data
Slc38a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87130,022,039 - 130,082,169 (-)NCBIGRCr8
mRatBN7.27128,142,866 - 128,203,000 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7128,144,807 - 128,202,995 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7129,943,266 - 130,001,005 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07132,168,810 - 132,226,543 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07132,084,330 - 132,142,464 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07138,459,576 - 138,512,952 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7138,459,504 - 138,512,952 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07138,083,492 - 138,121,200 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47135,693,013 - 135,750,703 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17135,769,452 - 135,827,140 (-)NCBI
Celera7124,640,023 - 124,696,672 (-)NCBICelera
Cytogenetic Map7q35NCBI
SLC38A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381246,764,761 - 46,832,431 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1246,764,761 - 46,832,408 (-)EnsemblGRCh38hg38GRCh38
GRCh371247,158,544 - 47,219,780 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361245,444,811 - 45,506,006 (-)NCBINCBI36Build 36hg18NCBI36
Build 341245,444,810 - 45,506,002NCBI
Celera1245,955,607 - 46,016,842 (-)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1244,189,482 - 44,250,721 (-)NCBIHuRef
CHM1_11247,123,562 - 47,184,747 (-)NCBICHM1_1
T2T-CHM13v2.01246,724,005 - 46,791,701 (-)NCBIT2T-CHM13v2.0
Slc38a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391596,892,701 - 96,953,837 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1596,892,701 - 96,953,837 (-)EnsemblGRCm39 Ensembl
GRCm381596,994,816 - 97,055,956 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1596,994,820 - 97,055,956 (-)EnsemblGRCm38mm10GRCm38
MGSCv371596,825,254 - 96,886,387 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361596,822,857 - 96,883,990 (-)NCBIMGSCv36mm8
Celera1599,130,658 - 99,191,913 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1552.77NCBI
Slc38a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555005,858,642 - 5,925,589 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555005,859,566 - 5,925,084 (-)NCBIChiLan1.0ChiLan1.0
SLC38A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21047,340,869 - 47,402,191 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11247,370,440 - 47,398,051 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01241,906,527 - 41,967,859 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11242,770,576 - 42,838,283 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1242,799,172 - 42,838,283 (+)Ensemblpanpan1.1panPan2
SLC38A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1277,685,955 - 7,756,222 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl277,685,660 - 7,770,363 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2738,550,951 - 38,635,574 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0277,816,502 - 7,885,592 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl277,846,744 - 7,968,256 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1277,676,712 - 7,760,967 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0277,719,068 - 7,803,637 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02738,793,742 - 38,877,856 (-)NCBIUU_Cfam_GSD_1.0
Slc38a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494568,235,611 - 68,299,109 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365124,865,769 - 4,929,166 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365124,867,276 - 4,929,175 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl577,411,613 - 77,482,013 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1577,411,610 - 77,489,542 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2580,391,346 - 80,496,817 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11142,965,744 - 43,035,055 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1142,963,599 - 43,005,300 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037203,383,860 - 203,451,736 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc38a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248165,450,908 - 5,530,772 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248165,451,464 - 5,529,453 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc38a4
428 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:19
Count of miRNA genes:19
Interacting mature miRNAs:19
Transcripts:ENSRNOT00000009187
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat

Markers in Region
BF386241  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27128,159,415 - 128,159,567 (+)MAPPERmRatBN7.2
Rnor_6.07138,476,130 - 138,476,281NCBIRnor6.0
Rnor_5.07138,098,022 - 138,098,173UniSTSRnor5.0
RGSC_v3.47135,707,543 - 135,707,694UniSTSRGSC3.4
Celera7124,654,553 - 124,654,704UniSTS
RH 3.4 Map71094.7UniSTS
Cytogenetic Map7q35UniSTS
AI013326  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27128,144,828 - 128,145,021 (+)MAPPERmRatBN7.2
Rnor_6.07138,461,539 - 138,461,731NCBIRnor6.0
Rnor_5.07138,083,431 - 138,083,623UniSTSRnor5.0
RGSC_v3.47135,692,952 - 135,693,144UniSTSRGSC3.4
Celera7124,639,962 - 124,640,154UniSTS
RH 3.4 Map71092.0UniSTS
Cytogenetic Map7q35UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 20 29 29 29 8 11 8 27 8
Low 1 15 26 12 11 12 74 26 12 11
Below cutoff 1 8 2 8 1 2

Sequence


RefSeq Acc Id: ENSRNOT00000009187   ⟹   ENSRNOP00000009187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7128,144,807 - 128,202,995 (-)Ensembl
Rnor_6.0 Ensembl7138,461,603 - 138,512,952 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085620   ⟹   ENSRNOP00000068616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7138,459,504 - 138,483,612 (-)Ensembl
RefSeq Acc Id: NM_130748   ⟹   NP_570104
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,024,063 - 130,082,169 (-)NCBI
mRatBN7.27128,144,890 - 128,203,000 (-)NCBI
Rnor_6.07138,461,600 - 138,512,952 (-)NCBI
Rnor_5.07138,083,492 - 138,121,200 (-)NCBI
RGSC_v3.47135,693,013 - 135,750,703 (-)RGD
Celera7124,640,023 - 124,696,672 (-)RGD
Sequence:
RefSeq Acc Id: XM_008765663   ⟹   XP_008763885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,022,039 - 130,057,596 (-)NCBI
mRatBN7.27128,142,866 - 128,178,426 (-)NCBI
Rnor_6.07138,459,576 - 138,495,101 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039078322   ⟹   XP_038934250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87130,022,039 - 130,076,461 (-)NCBI
mRatBN7.27128,142,866 - 128,197,292 (-)NCBI
RefSeq Acc Id: NP_570104   ⟸   NM_130748
- UniProtKB: Q9EQ25 (UniProtKB/Swiss-Prot),   A6KC31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763885   ⟸   XM_008765663
- Peptide Label: isoform X1
- UniProtKB: Q9EQ25 (UniProtKB/Swiss-Prot),   A6KC31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000068616   ⟸   ENSRNOT00000085620
RefSeq Acc Id: ENSRNOP00000009187   ⟸   ENSRNOT00000009187
RefSeq Acc Id: XP_038934250   ⟸   XM_039078322
- Peptide Label: isoform X1
- UniProtKB: Q9EQ25 (UniProtKB/Swiss-Prot),   A6KC31 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EQ25-F1-model_v2 AlphaFold Q9EQ25 1-547 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695611
Promoter ID:EPDNEW_R6135
Type:single initiation site
Name:Slc38a4_1
Description:solute carrier family 38, member 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07138,512,937 - 138,512,997EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621836 AgrOrtholog
BioCyc Gene G2FUF-32219 BioCyc
Ensembl Genes ENSRNOG00000006653 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055012724 UniProtKB/Swiss-Prot
  ENSRNOG00060006956 UniProtKB/Swiss-Prot
  ENSRNOG00065019162 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000009187 ENTREZGENE
  ENSRNOT00000009187.6 UniProtKB/Swiss-Prot
  ENSRNOT00055021743 UniProtKB/Swiss-Prot
  ENSRNOT00060011398 UniProtKB/Swiss-Prot
  ENSRNOT00065032227 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7462761 IMAGE-MGC_LOAD
InterPro AA_transpt_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:170573 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:114273 IMAGE-MGC_LOAD
NCBI Gene 170573 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Aa_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc38a4 PhenoGen
RatGTEx ENSRNOG00000006653 RatGTEx
  ENSRNOG00055012724 RatGTEx
  ENSRNOG00060006956 RatGTEx
  ENSRNOG00065019162 RatGTEx
UniProt A6KC31 ENTREZGENE, UniProtKB/TrEMBL
  Q9EQ25 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Slc38a4  solute carrier family 38, member 4    amino acid transport system A3  Name updated 1299863 APPROVED
2004-09-10 Slc38a4  amino acid transport system A3  Ata3    Symbol and Name updated 1299863 APPROVED
2002-08-07 Ata3  amino acid transport system A3      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression mRNA expressed only in the liver and skeletal muscle 631978
gene_product member of the amino acid transport system A family 631978
gene_protein 547 amino acids 631978