Krt7 (keratin 7) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Krt7 (keratin 7) Rattus norvegicus
Analyze
Symbol: Krt7
Name: keratin 7
RGD ID: 1310865
Description: Predicted to be a structural constituent of skin epidermis. Predicted to be involved in intermediate filament organization and keratinization. Predicted to be located in cytosol and intermediate filament cytoskeleton. Predicted to be active in keratin filament. Orthologous to human KRT7 (keratin 7); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CK-7; cytokeratin-7; K7; keratin 7, type II; keratin complex 2, basic, gene 7; keratin, type II cytoskeletal 7; keratin-7; Krt2-7; LOC300242; type II keratin Kb7; type-II keratin Kb7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,407,626 - 134,423,787 (+)NCBIGRCr8
mRatBN7.27132,528,881 - 132,545,052 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,528,895 - 132,545,052 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7134,330,597 - 134,346,874 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07136,560,103 - 136,576,380 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07136,469,880 - 136,486,169 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07143,059,731 - 143,075,907 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,059,764 - 143,075,907 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,861,000 - 140,877,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,160,829 - 140,226,474 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17140,237,243 - 140,252,129 (+)NCBI
Celera7128,994,095 - 129,010,230 (+)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Krt7Ratcholangiocarcinoma  ISOKRT7 (Homo sapiens)2317308 RGD 
Krt7Ratesophagus squamous cell carcinoma disease_progressionISOKRT7 (Homo sapiens)151665759 RGD 
Krt7RatExperimental Mammary Neoplasms  IEP 2317439 RGD 
Krt7Ratpancreatic ductal carcinoma disease_progressionISOKRT7 (Homo sapiens)2317307 RGD 
Krt7Ratsevere acute respiratory syndrome  ISOKrt7 (Mus musculus)30310231protein:increased expression:lung (mouse)RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Krt7RatChronic Hepatitis  ISOKRT7 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:22879914
Krt7RatCopper-Overload Cirrhosis  ISOKRT7 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:22879914
Krt7RatNeoplasm Invasiveness  ISOKRT7 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19921857
Krt7Ratoxyphilic adenoma  ISOKRT7 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16927643
Krt7Ratprimary biliary cholangitis  ISOKRT7 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21681009
Krt7Ratrenal cell carcinoma  ISOKRT7 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15108329 and PMID:16927643

1 to 20 of 173 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Krt7Rat(-)-demecolcine increases expressionISOKRT7 (Homo sapiens)6480464Demecolcine results in increased expression of KRT7 mRNACTDPMID:23649840
Krt7Rat1,1-dichloroethene decreases expressionISOKrt7 (Mus musculus)6480464vinylidene chloride results in decreased expression of KRT7 mRNACTDPMID:26682919
Krt7Rat1,2-dimethylhydrazine increases expressionISOKrt7 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of KRT7 mRNACTDPMID:22206623
Krt7Rat1,2-dimethylhydrazine multiple interactionsISOKrt7 (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of KRT7 mRNA]CTDPMID:22206623
Krt7Rat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of KRT7 mRNACTDPMID:30723492
Krt7Rat17alpha-ethynylestradiol increases expressionISOKrt7 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of KRT7 mRNACTDPMID:17942748
Krt7Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of KRT7 mRNACTDPMID:17557909
Krt7Rat17alpha-ethynylestradiol multiple interactionsISOKrt7 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of KRT7 mRNACTDPMID:17942748
Krt7Rat17alpha-ethynylestradiol affects expressionISOKrt7 (Mus musculus)6480464Ethinyl Estradiol affects the expression of KRT7 mRNACTDPMID:17555576
Krt7Rat17beta-estradiol increases expressionISOKRT7 (Homo sapiens)6480464Estradiol results in increased expression of KRT7 mRNACTDPMID:19484750
Krt7Rat17beta-estradiol multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of KRT7 mRNACTDPMID:32741896
Krt7Rat17beta-estradiol multiple interactionsISOKRT7 (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in increased expression of KRT7 mRNACTDPMID:30165855
Krt7Rat17beta-estradiol multiple interactionsISOKrt7 (Mus musculus)6480464[bisphenol A results in increased susceptibility to Estradiol] which results in decreased expression of KRT7 mRNACTDPMID:27312807
Krt7Rat17beta-estradiol increases expressionISOKrt7 (Mus musculus)6480464Estradiol results in increased expression of KRT7 mRNACTDPMID:19484750
Krt7Rat17beta-estradiol 3-benzoate multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of KRT7 mRNACTDPMID:32741896
Krt7Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOKrt7 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of KRT7 mRNACTDPMID:17942748
Krt7Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of KRT7 mRNACTDPMID:32109520 more ...
Krt7Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOKRT7 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of KRT7 proteinCTDPMID:21410761
Krt7Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOKrt7 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of KRT7 mRNACTDPMID:21570461
Krt7Rat2,4-diaminotoluene increases expressionISOKrt7 (Mus musculus)64804642 and 4-diaminotoluene results in increased expression of KRT7 mRNACTDPMID:20713471

1 to 20 of 173 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Krt7Ratbiological_process  ND 159840704/2010: no relevant rat dataRGD 
Krt7Ratintermediate filament organization involved_inIBAMGI:1100845 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Krt7Ratkeratinization involved_inIBAMGI:1100845 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Cellular Component
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Krt7Ratcytoplasm located_inISOKRT7 (Homo sapiens)1624291 PMID:2459129RGDPMID:2459129
Krt7Ratcytoplasm located_inIEAUniProtKB:P08729 and ensembl:ENSP000003292431600115GO_REF:0000107EnsemblGO_REF:0000107
Krt7Ratcytosol located_inIEAUniProtKB:P08729 and ensembl:ENSP000003292431600115GO_REF:0000107EnsemblGO_REF:0000107
Krt7Ratcytosol located_inISOKRT7 (Homo sapiens)1624291 RGDGO_REF:0000052
Krt7Ratintermediate filament located_inIEAUniProtKB-KW:KW-0403 and UniProtKB-KW:KW-04161600115GO_REF:0000043UniProtGO_REF:0000043
Krt7Ratintermediate filament cytoskeleton located_inISOKRT7 (Homo sapiens)1624291 RGDGO_REF:0000052
Krt7Ratintermediate filament cytoskeleton located_inIEAUniProtKB:P08729 and ensembl:ENSP000003292431600115GO_REF:0000107EnsemblGO_REF:0000107
Krt7Ratkeratin filament located_inIEAInterPro:IPR0030541600115GO_REF:0000002InterProGO_REF:0000002
Krt7Ratkeratin filament is_active_inIBAMGI:1861586 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
1 to 9 of 9 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Krt7Ratprotein binding enablesISOKRT7 (Homo sapiens)1624291UniProtKB:P09429 more ...RGDPMID:11169732 more ...
Krt7Ratprotein binding enablesISOKrt7 (Mus musculus)1624291PR:P08730 more ...RGDPMID:11591653
Krt7Ratstructural constituent of skin epidermis enablesIBAMGI:96699 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033


1 to 11 of 11 rows
#
Reference Title
Reference Citation
1. Combined gene expression analysis of whole-tissue and microdissected pancreatic ductal adenocarcinoma identifies genes specifically overexpressed in tumor epithelia. Badea L, etal., Hepatogastroenterology. 2008 Nov-Dec;55(88):2016-27.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury. Gralinski LE, etal., mBio. 2013 Aug 6;4(4). pii: mBio.00271-13. doi: 10.1128/mBio.00271-13.
5. Clinicopathological study on cholangiolocellular carcinoma suggesting hepatic progenitor cell origin. Komuta M, etal., Hepatology. 2008 May;47(5):1544-56.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Overexpression of neu-related lipocalin (NRL) in neu-initiated but not ras or chemically initiated rat mammary carcinomas. Stoesz SP and Gould MN, Oncogene. 1995 Dec 7;11(11):2233-41.
11. FOXA1 and CK7 expression in esophageal squamous cell carcinoma and its prognostic significance. Xu Y, etal., Neoplasma. 2018 Mar 14;65(3):469-476. doi: 10.4149/neo_2018_170529N384.
1 to 11 of 11 rows
PMID:2459129   PMID:15085952   PMID:21630459   PMID:23533145   PMID:27525410  



Krt7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,407,626 - 134,423,787 (+)NCBIGRCr8
mRatBN7.27132,528,881 - 132,545,052 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,528,895 - 132,545,052 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7134,330,597 - 134,346,874 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07136,560,103 - 136,576,380 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07136,469,880 - 136,486,169 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07143,059,731 - 143,075,907 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,059,764 - 143,075,907 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,861,000 - 140,877,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,160,829 - 140,226,474 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17140,237,243 - 140,252,129 (+)NCBI
Celera7128,994,095 - 129,010,230 (+)NCBICelera
Cytogenetic Map7q36NCBI
KRT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,233,243 - 52,255,853 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,232,520 - 52,252,186 (+)EnsemblGRCh38hg38GRCh38
GRCh371252,627,027 - 52,642,705 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361250,913,221 - 50,928,976 (+)NCBINCBI36Build 36hg18NCBI36
Build 341250,913,220 - 50,928,976NCBI
Celera1251,429,401 - 51,445,152 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1249,659,684 - 49,676,166 (+)NCBIHuRef
CHM1_11252,593,314 - 52,609,064 (+)NCBICHM1_1
T2T-CHM13v2.01252,196,307 - 52,215,830 (+)NCBIT2T-CHM13v2.0
Krt7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,310,284 - 101,325,687 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,308,924 - 101,328,194 (+)EnsemblGRCm39 Ensembl
GRCm3815101,412,403 - 101,427,806 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,411,043 - 101,430,313 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715101,242,834 - 101,258,237 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615101,240,437 - 101,255,827 (+)NCBIMGSCv36mm8
Celera15103,560,951 - 103,576,262 (+)NCBICelera
Cytogenetic Map15F1- F2NCBI
cM Map1556.88NCBI
Krt7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555472,533,377 - 2,598,833 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555472,584,425 - 2,598,770 (+)NCBIChiLan1.0ChiLan1.0
KRT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21041,946,442 - 41,962,674 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11241,943,205 - 41,958,887 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01236,514,021 - 36,529,721 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11237,291,244 - 37,307,300 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1237,291,244 - 37,307,341 (-)Ensemblpanpan1.1panPan2
KRT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,812,709 - 2,827,451 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,426,876 - 43,441,582 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,811,546 - 2,826,249 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,656,611 - 2,826,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,828,289 - 2,843,003 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,814,255 - 2,828,967 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02743,825,075 - 43,839,789 (+)NCBIUU_Cfam_GSD_1.0
Krt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494563,508,247 - 63,571,032 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365129,641,587 - 9,656,524 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365129,641,587 - 9,656,573 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl517,555,728 - 17,570,581 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1517,553,192 - 17,570,582 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KRT7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11148,379,460 - 48,394,638 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1148,379,465 - 48,394,643 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037197,697,351 - 197,712,521 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Krt7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624816105,758 - 134,567 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624816103,285 - 168,486 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Krt7
175 total Variants

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:107
Interacting mature miRNAs:112
Transcripts:ENSRNOT00000010660
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 15 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat

1 to 10 of 15 rows
AA945785  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27132,544,761 - 132,544,872 (+)MAPPERmRatBN7.2
Rnor_6.07143,075,617 - 143,075,727NCBIRnor6.0
Rnor_5.07140,876,863 - 140,876,973UniSTSRnor5.0
RGSC_v3.47140,175,402 - 140,175,512UniSTSRGSC3.4
Celera7129,009,940 - 129,010,050UniSTS
RH 3.4 Map71065.1UniSTS
Cytogenetic Map7q36UniSTS
AU048706  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27132,539,716 - 132,539,825 (+)MAPPERmRatBN7.2
Rnor_6.07143,070,574 - 143,070,682NCBIRnor6.0
Rnor_5.07140,871,820 - 140,871,928UniSTSRnor5.0
RGSC_v3.47140,170,380 - 140,170,488UniSTSRGSC3.4
Celera7129,004,889 - 129,004,997UniSTS
Cytogenetic Map7q36UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 108 91 90 59 25 59 6 214 93 88 45 60 31



Ensembl Acc Id: ENSRNOT00000010660   ⟹   ENSRNOP00000010660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7132,528,895 - 132,545,052 (+)Ensembl
Rnor_6.0 Ensembl7143,059,764 - 143,075,907 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087370   ⟹   ENSRNOP00000074444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7143,059,768 - 143,061,223 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087481   ⟹   ENSRNOP00000075566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7132,528,897 - 132,545,032 (+)Ensembl
Rnor_6.0 Ensembl7143,060,597 - 143,075,906 (+)Ensembl
RefSeq Acc Id: NM_001047870   ⟹   NP_001041335
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87134,407,626 - 134,423,787 (+)NCBI
mRatBN7.27132,528,889 - 132,545,052 (+)NCBI
RefSeq Acc Id: NM_001399745   ⟹   NP_001386674
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87134,407,626 - 134,423,787 (+)NCBI
mRatBN7.27132,528,889 - 132,545,052 (+)NCBI
RefSeq Acc Id: XM_039080387   ⟹   XP_038936315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87134,407,991 - 134,423,787 (+)NCBI
mRatBN7.27132,529,246 - 132,545,052 (+)NCBI
1 to 9 of 9 rows
Protein RefSeqs NP_001041335 (Get FASTA)   NCBI Sequence Viewer  
  NP_001386674 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936315 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein DAA02218 (Get FASTA)   NCBI Sequence Viewer  
  EDL86895 (Get FASTA)   NCBI Sequence Viewer  
  EDL86896 (Get FASTA)   NCBI Sequence Viewer  
  EDL86897 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000010660
GenBank Protein Q6IG12 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
Ensembl Acc Id: ENSRNOP00000074444   ⟸   ENSRNOT00000087370
Ensembl Acc Id: ENSRNOP00000075566   ⟸   ENSRNOT00000087481
Ensembl Acc Id: ENSRNOP00000010660   ⟸   ENSRNOT00000010660
RefSeq Acc Id: XP_038936315   ⟸   XM_039080387
- Peptide Label: isoform X1
- UniProtKB: A0A0G2KAX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001041335   ⟸   NM_001047870
- Peptide Label: isoform 1
- UniProtKB: G3V712 (UniProtKB/TrEMBL),   A6KCP5 (UniProtKB/TrEMBL),   A0A0G2KAX7 (UniProtKB/TrEMBL)
IF rod

Name Modeler Protein Id AA Range Protein Structure
AF-Q6IG12-F1-model_v2 AlphaFold Q6IG12 1-457 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13695674
Promoter ID:EPDNEW_R6195
Type:multiple initiation site
Name:Krt7_1
Description:keratin 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07143,060,975 - 143,061,035EPDNEW


1 to 29 of 29 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-31986 BioCyc
Ensembl Genes ENSRNOG00000008057 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000010660 ENTREZGENE
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot
  Single helix bin UniProtKB/Swiss-Prot
  Vasodilator-stimulated phosphoprotein UniProtKB/Swiss-Prot
InterPro IF_conserved UniProtKB/Swiss-Prot
  IF_rod_dom UniProtKB/Swiss-Prot
  Keratin_2_head UniProtKB/Swiss-Prot
  Keratin_II UniProtKB/Swiss-Prot
KEGG Report rno:300242 UniProtKB/Swiss-Prot
NCBI Gene 300242 ENTREZGENE
PANTHER GATA-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
  KERATIN, TYPE II CYTOSKELETAL 7 UniProtKB/Swiss-Prot
Pfam Filament UniProtKB/Swiss-Prot
  Keratin_2_head UniProtKB/Swiss-Prot
PhenoGen Krt7 PhenoGen
PRINTS TYPE2KERATIN UniProtKB/Swiss-Prot
PROSITE IF_ROD_1 UniProtKB/Swiss-Prot
  IF_ROD_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008057 RatGTEx
SMART Filament UniProtKB/Swiss-Prot
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/Swiss-Prot
  Prefoldin UniProtKB/Swiss-Prot
UniProt A0A0G2KAX7 ENTREZGENE, UniProtKB/TrEMBL
  A6KCP5 ENTREZGENE, UniProtKB/TrEMBL
  A6KCP6 ENTREZGENE, UniProtKB/TrEMBL
  G3V712 ENTREZGENE, UniProtKB/TrEMBL
  K2C7_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 29 of 29 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-15 Krt7  keratin 7  Krt7  keratin 7, type II  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-01-28 Krt7  keratin 7, type II  Krt7  keratin 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Krt7  keratin 7  Krt2-7  keratin complex 2, basic, gene 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 Krt2-7  keratin complex 2, basic, gene 7  Krt2-7_predicted  keratin complex 2, basic, gene 7 (predicted)  Symbol and Name status set to approved 1299863 APPROVED
2005-01-12 Krt2-7_predicted  keratin complex 2, basic, gene 7 (predicted)      Symbol and Name status set to approved 70820 APPROVED