KRT7 (keratin 7) - Rat Genome Database

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Gene: KRT7 (keratin 7) Canis lupus familiaris
Analyze
Symbol: KRT7 (Ensembl: KRT86)
Name: keratin 7
RGD ID: 12407942
Description: ASSOCIATED WITH cholangiocarcinoma (ortholog); Chronic Hepatitis (ortholog); Copper-Overload Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intermediate filament cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CK7; cytokeratin 7; keratin, type II cytoskeletal 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,812,709 - 2,827,451 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,426,876 - 43,441,582 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,811,546 - 2,826,249 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,656,611 - 2,826,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,828,289 - 2,843,003 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,814,255 - 2,828,967 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02743,825,075 - 43,839,789 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:18039893   PMID:18196537   PMID:18213634   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KRT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,812,709 - 2,827,451 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,426,876 - 43,441,582 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,811,546 - 2,826,249 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,656,611 - 2,826,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,828,289 - 2,843,003 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,814,255 - 2,828,967 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02743,825,075 - 43,839,789 (+)NCBIUU_Cfam_GSD_1.0
KRT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,233,243 - 52,255,853 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,232,520 - 52,252,186 (+)EnsemblGRCh38hg38GRCh38
GRCh371252,627,027 - 52,642,705 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361250,913,221 - 50,928,976 (+)NCBINCBI36Build 36hg18NCBI36
Build 341250,913,220 - 50,928,976NCBI
Celera1251,429,401 - 51,445,152 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1249,659,684 - 49,676,166 (+)NCBIHuRef
CHM1_11252,593,314 - 52,609,064 (+)NCBICHM1_1
T2T-CHM13v2.01252,196,307 - 52,215,830 (+)NCBIT2T-CHM13v2.0
Krt7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,310,284 - 101,325,687 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,308,924 - 101,328,194 (+)EnsemblGRCm39 Ensembl
GRCm3815101,412,403 - 101,427,806 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,411,043 - 101,430,313 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715101,242,834 - 101,258,237 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615101,240,437 - 101,255,827 (+)NCBIMGSCv36mm8
Celera15103,560,951 - 103,576,262 (+)NCBICelera
Cytogenetic Map15F1- F2NCBI
cM Map1556.88NCBI
Krt7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,407,626 - 134,423,787 (+)NCBIGRCr8
mRatBN7.27132,528,881 - 132,545,052 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,528,895 - 132,545,052 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7134,330,597 - 134,346,874 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07136,560,103 - 136,576,380 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07136,469,880 - 136,486,169 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07143,059,731 - 143,075,907 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,059,764 - 143,075,907 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,861,000 - 140,877,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,160,829 - 140,226,474 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17140,237,243 - 140,252,129 (+)NCBI
Celera7128,994,095 - 129,010,230 (+)NCBICelera
Cytogenetic Map7q36NCBI
Krt7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555472,533,377 - 2,598,833 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555472,584,425 - 2,598,770 (+)NCBIChiLan1.0ChiLan1.0
KRT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21041,946,442 - 41,962,674 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11241,943,205 - 41,958,887 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01236,514,021 - 36,529,721 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11237,291,244 - 37,307,300 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1237,291,244 - 37,307,341 (-)Ensemblpanpan1.1panPan2
Krt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494563,508,247 - 63,571,032 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365129,641,587 - 9,656,524 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365129,641,587 - 9,656,573 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl517,555,728 - 17,570,581 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1517,553,192 - 17,570,582 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KRT7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11148,379,460 - 48,394,638 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1148,379,465 - 48,394,643 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037197,697,351 - 197,712,521 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Krt7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624816105,758 - 134,567 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624816103,285 - 168,486 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KRT7
404 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00845044907   ⟹   ENSCAFP00845035193
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl272,656,611 - 2,826,996 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845044998   ⟹   ENSCAFP00845035267
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl272,656,611 - 2,826,996 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845045117   ⟹   ENSCAFP00845035371
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl272,656,611 - 2,826,258 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845045205   ⟹   ENSCAFP00845035444
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl272,656,611 - 2,732,160 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845045326   ⟹   ENSCAFP00845035549
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl272,718,391 - 2,732,160 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845045447   ⟹   ENSCAFP00845035647
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl272,759,710 - 2,766,905 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845045530   ⟹   ENSCAFP00845035711
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl272,811,616 - 2,826,258 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845045612   ⟹   ENSCAFP00845035785
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl272,814,892 - 2,820,738 (-)Ensembl
RefSeq Acc Id: XM_038438118   ⟹   XP_038294046
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0272,811,546 - 2,826,249 (-)NCBI
RefSeq Acc Id: XM_038460138   ⟹   XP_038316066
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2743,426,876 - 43,441,582 (+)NCBI
RefSeq Acc Id: XM_038512813   ⟹   XP_038368741
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1272,828,289 - 2,843,003 (-)NCBI
RefSeq Acc Id: XM_038577729   ⟹   XP_038433657
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02743,825,075 - 43,839,789 (+)NCBI
RefSeq Acc Id: XM_038640575   ⟹   XP_038496503
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0272,814,255 - 2,828,967 (-)NCBI
RefSeq Acc Id: XP_038368741   ⟸   XM_038512813
RefSeq Acc Id: XP_038496503   ⟸   XM_038640575
RefSeq Acc Id: XP_038294046   ⟸   XM_038438118
- UniProtKB: A0A8C0Z0X3 (UniProtKB/TrEMBL),   A0A8I3PRA8 (UniProtKB/TrEMBL),   A0A8C0P5E1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316066   ⟸   XM_038460138
- UniProtKB: A0A8C0JLA5 (UniProtKB/TrEMBL),   A0A8P0PR78 (UniProtKB/TrEMBL),   A0A8C0P5E1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433657   ⟸   XM_038577729
- UniProtKB: A0A8C0P5E1 (UniProtKB/TrEMBL),   A0A8C0Z0X3 (UniProtKB/TrEMBL),   A0A8I3PRA8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845035711   ⟸   ENSCAFT00845045530
Ensembl Acc Id: ENSCAFP00845035371   ⟸   ENSCAFT00845045117
Ensembl Acc Id: ENSCAFP00845035647   ⟸   ENSCAFT00845045447
Ensembl Acc Id: ENSCAFP00845035193   ⟸   ENSCAFT00845044907
Ensembl Acc Id: ENSCAFP00845035444   ⟸   ENSCAFT00845045205
Ensembl Acc Id: ENSCAFP00845035267   ⟸   ENSCAFT00845044998
Ensembl Acc Id: ENSCAFP00845035785   ⟸   ENSCAFT00845045612
Ensembl Acc Id: ENSCAFP00845035549   ⟸   ENSCAFT00845045326
Protein Domains
IF rod


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007293 UniProtKB/TrEMBL
  ENSCAFG00030022127 UniProtKB/TrEMBL
  ENSCAFG00040017430 UniProtKB/TrEMBL
  ENSCAFG00845025459 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000106739.1 UniProtKB/TrEMBL
  ENSCAFT00030041139.1 UniProtKB/TrEMBL
  ENSCAFT00040032697.1 UniProtKB/TrEMBL
  ENSCAFT00845044907.1 UniProtKB/TrEMBL
  ENSCAFT00845044998.1 UniProtKB/TrEMBL
  ENSCAFT00845045117.1 UniProtKB/TrEMBL
  ENSCAFT00845045205.1 UniProtKB/TrEMBL
  ENSCAFT00845045530 ENTREZGENE
  ENSCAFT00845045530.1 UniProtKB/TrEMBL
  ENSCAFT00845045612.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  Single helix bin UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/TrEMBL
InterPro IF_conserved UniProtKB/TrEMBL
  IF_rod_dom UniProtKB/TrEMBL
  Keratin_2_head UniProtKB/TrEMBL
  Keratin_II UniProtKB/TrEMBL
NCBI Gene KRT7 ENTREZGENE
PANTHER GATA-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  KERATIN 89 UniProtKB/TrEMBL
  KERATIN, TYPE II CYTOSKELETAL 7 UniProtKB/TrEMBL
Pfam Filament UniProtKB/TrEMBL
  Keratin_2_head UniProtKB/TrEMBL
PRINTS TYPE2KERATIN UniProtKB/TrEMBL
PROSITE IF_ROD_1 UniProtKB/TrEMBL
  IF_ROD_2 UniProtKB/TrEMBL
SMART Filament UniProtKB/TrEMBL
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/TrEMBL
  Prefoldin UniProtKB/TrEMBL
UniProt A0A8C0JLA5 ENTREZGENE
  A0A8C0P5E1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z0X3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PM65_CANLF UniProtKB/TrEMBL
  A0A8I3PRA8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PUR8_CANLF UniProtKB/TrEMBL
  A0A8I3PUU4_CANLF UniProtKB/TrEMBL
  A0A8I3PV96_CANLF UniProtKB/TrEMBL
  A0A8I3PVG1_CANLF UniProtKB/TrEMBL
  A0A8P0PR78 ENTREZGENE, UniProtKB/TrEMBL