LOC120094043 (U4 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120094043 (U4 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120094043
Name: U4 spliceosomal RNA
RGD ID: 41008048
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U4
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87128,517,550 - 128,517,615 (+)NCBIGRCr8
mRatBN7.27126,638,318 - 126,638,409 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7126,638,318 - 126,638,409 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map7q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120094043
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87128,517,550 - 128,517,615 (+)NCBIGRCr8
mRatBN7.27126,638,318 - 126,638,409 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7126,638,318 - 126,638,409 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map7q35NCBI
RNU4-6P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X16,875,117 - 16,875,320 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX16,875,146 - 16,875,267 (-)EnsemblGRCh38hg38GRCh38
GRCh37X16,893,240 - 16,893,443 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X16,803,161 - 16,803,364 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX21,011,397 - 21,011,600 (-)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX14,653,781 - 14,653,984 (-)NCBIHuRef
CHM1_1X16,923,620 - 16,923,823 (-)NCBICHM1_1
T2T-CHM13v2.0X16,457,631 - 16,457,834 (-)NCBIT2T-CHM13v2.0
Gm22720
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399105,550,664 - 105,550,750 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9105,550,664 - 105,550,750 (-)EnsemblGRCm39 Ensembl
GRCm389105,673,465 - 105,673,551 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9105,673,465 - 105,673,551 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map9F1NCBI
LOC119867674
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1420,608,387 - 20,608,551 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01420,871,491 - 20,871,655 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1420,871,491 - 20,871,655 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11421,017,223 - 21,017,387 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01420,751,189 - 20,751,353 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01421,008,750 - 21,008,914 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC120094043
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)7116677189127103496Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000117471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7126,638,318 - 126,638,409 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-32285 BioCyc
Ensembl Genes ENSRNOG00000062426 Ensembl, ENTREZGENE
NCBI Gene LOC120094043 ENTREZGENE
PhenoGen LOC120094043 PhenoGen
RatGTEx ENSRNOG00000062426 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-27 LOC120094043  U4 spliceosomal RNA  U4  U4 spliceosomal RNA  Data merged from RGD:150342481 737654 PROVISIONAL
2021-08-31 U4  U4 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-01-26 LOC120094043  U4 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL