Gtse1 (G-2 and S-phase expressed 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gtse1 (G-2 and S-phase expressed 1) Rattus norvegicus
Analyze
Symbol: Gtse1
Name: G-2 and S-phase expressed 1
RGD ID: 1563164
Description: Predicted to enable microtubule binding activity. Predicted to be active in cytoplasmic microtubule. Orthologous to human GTSE1 (G2 and S-phase expressed 1); PARTICIPATES IN p53 signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: G two S phase expressed protein 1; G2 and S phase-expressed protein 1; LOC300126; RGD1563164; similar to B99 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87118,829,793 - 118,846,662 (+)NCBIGRCr8
mRatBN7.27116,949,997 - 116,966,826 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7116,950,053 - 116,966,806 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7118,701,232 - 118,717,935 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07120,926,858 - 120,943,561 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07120,896,421 - 120,913,124 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07126,736,416 - 126,753,221 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7126,736,732 - 126,753,220 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07126,447,537 - 126,464,333 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47123,862,066 - 123,878,554 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7113,241,381 - 113,257,853 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2-acetamidofluorene  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
dibenz[a,h]anthracene  (ISO)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
diethyl maleate  (EXP)
dimethylarsinous acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP)
fenamidone  (ISO)
fenofibrate  (EXP)
FR900359  (ISO)
furan  (EXP)
genistein  (ISO)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
iron(III) nitrilotriacetate  (EXP)
leflunomide  (EXP,ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
niclosamide  (ISO)
ochratoxin A  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PCB138  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
Triptolide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10974554   PMID:19946888  


Genomics

Comparative Map Data
Gtse1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87118,829,793 - 118,846,662 (+)NCBIGRCr8
mRatBN7.27116,949,997 - 116,966,826 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7116,950,053 - 116,966,806 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7118,701,232 - 118,717,935 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07120,926,858 - 120,943,561 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07120,896,421 - 120,913,124 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07126,736,416 - 126,753,221 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7126,736,732 - 126,753,220 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07126,447,537 - 126,464,333 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47123,862,066 - 123,878,554 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7113,241,381 - 113,257,853 (+)NCBICelera
Cytogenetic Map7q34NCBI
GTSE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382246,296,870 - 46,330,810 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2246,296,870 - 46,330,810 (+)EnsemblGRCh38hg38GRCh38
GRCh372246,692,767 - 46,726,707 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362245,071,476 - 45,108,260 (+)NCBINCBI36Build 36hg18NCBI36
Build 342245,013,330 - 45,050,112NCBI
Celera2230,600,021 - 30,634,091 (+)NCBICelera
Cytogenetic Map22q13.31NCBI
HuRef2229,636,647 - 29,670,714 (+)NCBIHuRef
CHM1_12246,651,368 - 46,685,447 (+)NCBICHM1_1
T2T-CHM13v2.02246,781,567 - 46,815,510 (+)NCBIT2T-CHM13v2.0
Gtse1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391585,743,928 - 85,760,774 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1585,743,946 - 85,760,774 (+)EnsemblGRCm39 Ensembl
GRCm381585,859,691 - 85,876,573 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1585,859,745 - 85,876,573 (+)EnsemblGRCm38mm10GRCm38
MGSCv371585,690,137 - 85,707,003 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361585,687,742 - 85,704,339 (+)NCBIMGSCv36mm8
Celera1587,992,841 - 88,010,377 (+)NCBICelera
Cytogenetic Map15E2NCBI
cM Map1540.42NCBI
Gtse1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541330,413,967 - 30,438,040 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541330,414,007 - 30,438,363 (+)NCBIChiLan1.0ChiLan1.0
GTSE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22356,124,144 - 56,163,415 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12258,821,594 - 58,857,705 (+)NCBINHGRI_mPanPan1
PanPan1.12245,362,777 - 45,394,920 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2245,362,777 - 45,394,920 (+)Ensemblpanpan1.1panPan2
GTSE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11019,863,064 - 19,883,972 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1019,863,255 - 19,883,506 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1019,785,529 - 19,806,551 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01020,596,600 - 20,617,607 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1020,596,877 - 20,617,624 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11020,317,190 - 20,338,190 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01020,629,758 - 20,651,012 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01020,811,723 - 20,832,742 (-)NCBIUU_Cfam_GSD_1.0
Gtse1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049453,591,771 - 3,607,775 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366293,592,100 - 3,607,754 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366293,590,101 - 3,607,625 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTSE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl53,227,816 - 3,242,789 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.153,227,813 - 3,246,679 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25545,215 - 564,097 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GTSE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11928,776,515 - 28,811,712 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1928,777,821 - 28,811,035 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604596,718,613 - 96,751,924 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gtse1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247523,555,283 - 3,572,409 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247523,554,960 - 3,580,180 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gtse1
239 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:302
Count of miRNA genes:192
Interacting mature miRNAs:216
Transcripts:ENSRNOT00000022012
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1582240Sffal1Serum free fatty acids level QTL 13.40.0021blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)7116677010124049952Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)7116677189127103496Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 26 24 18 9 18 34 18 32
Low 1 14 32 22 10 22 3 3 40 16 9 11 3
Below cutoff 3 1 1 1 5 8 1 5

Sequence


RefSeq Acc Id: ENSRNOT00000022012   ⟹   ENSRNOP00000022012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7116,950,053 - 116,966,806 (+)Ensembl
Rnor_6.0 Ensembl7126,736,732 - 126,753,220 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103791   ⟹   ENSRNOP00000090727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7116,950,347 - 116,966,681 (+)Ensembl
RefSeq Acc Id: NM_001130500   ⟹   NP_001123972
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87118,830,173 - 118,846,661 (+)NCBI
mRatBN7.27116,950,335 - 116,966,825 (+)NCBI
Rnor_6.07126,736,732 - 126,753,220 (+)NCBI
Rnor_5.07126,447,537 - 126,464,333 (+)NCBI
RGSC_v3.47123,862,066 - 123,878,554 (+)RGD
Celera7113,241,381 - 113,257,853 (+)RGD
Sequence:
RefSeq Acc Id: XM_006242160   ⟹   XP_006242222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87118,829,793 - 118,846,662 (+)NCBI
mRatBN7.27116,949,997 - 116,966,826 (+)NCBI
Rnor_6.07126,736,416 - 126,753,221 (+)NCBI
Rnor_5.07126,447,537 - 126,464,333 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001123972 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242222 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM15566 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022012
  ENSRNOP00000022012.5
  ENSRNOP00000090727
  ENSRNOP00000090727.1
RefSeq Acc Id: NP_001123972   ⟸   NM_001130500
- UniProtKB: D3ZPA8 (UniProtKB/TrEMBL),   A6HTF6 (UniProtKB/TrEMBL),   A0A8I6GJ39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242222   ⟸   XM_006242160
- Peptide Label: isoform X1
- UniProtKB: D3ZPA8 (UniProtKB/TrEMBL),   A6HTF6 (UniProtKB/TrEMBL),   A0A8I6GJ39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000022012   ⟸   ENSRNOT00000022012
RefSeq Acc Id: ENSRNOP00000090727   ⟸   ENSRNOT00000103791
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZPA8-F1-model_v2 AlphaFold D3ZPA8 1-749 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695569
Promoter ID:EPDNEW_R6093
Type:initiation region
Name:Gtse1_1
Description:G-2 and S-phase expressed 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07126,736,758 - 126,736,818EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563164 AgrOrtholog
BioCyc Gene G2FUF-32523 BioCyc
Ensembl Genes ENSRNOG00000016148 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022012.8 UniProtKB/TrEMBL
  ENSRNOT00000103791 ENTREZGENE
  ENSRNOT00000103791.1 UniProtKB/TrEMBL
InterPro DDA3/GTSE-1 UniProtKB/TrEMBL
  GTSE1_N UniProtKB/TrEMBL
KEGG Report rno:300126 UniProtKB/TrEMBL
NCBI Gene 300126 ENTREZGENE
PANTHER PTHR21584 UniProtKB/TrEMBL
  PTHR21584:SF10 UniProtKB/TrEMBL
Pfam GTSE1_N UniProtKB/TrEMBL
PhenoGen Gtse1 PhenoGen
RatGTEx ENSRNOG00000016148 RatGTEx
UniProt A0A8I6GJ39 ENTREZGENE, UniProtKB/TrEMBL
  A6HTF6 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPA8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-17 Gtse1  G-2 and S-phase expressed 1  Gtse1  G two S phase expressed protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Gtse1  G two S phase expressed protein 1  RGD1563164_predicted  similar to B99 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563164_predicted  similar to B99 protein (predicted)  LOC300126  similar to B99 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC300126  similar to B99 protein      Symbol and Name status set to provisional 70820 PROVISIONAL