Rpl10-ps13 (ribosomal protein L10, pseudogene 13) - Rat Genome Database

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Gene: Rpl10-ps13 (ribosomal protein L10, pseudogene 13) Rattus norvegicus
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Symbol: Rpl10-ps13
Name: ribosomal protein L10, pseudogene 13
RGD ID: 1564963
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in regulation of translation and translation. Predicted to be part of cytosolic large ribosomal subunit; INTERACTS WITH 3-chloropropane-1,2-diol; ammonium chloride.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: 60S ribosomal protein L10-like; LOC503169; RGD1564963; similar to ribosomal protein L10
Related Functional Gene: Rpl10  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87129,563,991 - 129,564,361 (-)NCBIGRCr8
mRatBN7.27127,684,802 - 127,685,172 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7127,684,705 - 127,685,569 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07137,917,283 - 137,917,825 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07137,549,307 - 137,549,811 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47135,199,464 - 135,222,242 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7124,189,907 - 124,190,449 (-)NCBICelera
Cytogenetic Map7q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7119280025135560836Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)7116269196132020414Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000094138   ⟹   ENSRNOP00000083883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7127,684,705 - 127,685,569 (-)Ensembl
RefSeq Acc Id: XM_006242289   ⟹   XP_006242351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27127,684,720 - 127,685,243 (-)NCBI
Rnor_6.07137,917,283 - 137,917,825 (-)NCBI
Rnor_5.07137,549,307 - 137,549,811 (-)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSRNOP00000083883.1
RefSeq Acc Id: XP_006242351   ⟸   XM_006242289
- Sequence:
Ensembl Acc Id: ENSRNOP00000083883   ⟸   ENSRNOT00000094138

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-32248 BioCyc
Ensembl Genes ENSRNOG00000069806 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000094138.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.60.300 UniProtKB/TrEMBL
  3.90.1170.10 UniProtKB/TrEMBL
InterPro Ribosomal_L10e UniProtKB/TrEMBL
  Ribosomal_L10e/L16 UniProtKB/TrEMBL
  Ribosomal_L10e/L16_sf UniProtKB/TrEMBL
  Ribosomal_uL16 UniProtKB/TrEMBL
NCBI Gene 503169 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L10 UniProtKB/TrEMBL
  PTHR11726 UniProtKB/TrEMBL
Pfam Ribosomal_L16 UniProtKB/TrEMBL
PhenoGen Rpl10-ps13 PhenoGen
RatGTEx ENSRNOG00000069806 RatGTEx
Superfamily-SCOP SSF54686 UniProtKB/TrEMBL
UniProt A0A8I5ZXK4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl10-ps13  ribosomal protein L10, pseudogene 13  RGD1564963  similar to ribosomal protein L10  Symbol and Name Changed 1299863 APPROVED
2022-06-02 RGD1564963  similar to ribosomal protein L10  RGD1564963  similar to ribosomal protein L10  Data merged from RGD:149736114 737654 PROVISIONAL
2021-08-09 RGD1564963  similar to ribosomal protein L10      Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 RGD1564963  similar to ribosomal protein L10   RGD1564963_predicted  similar to ribosomal protein L10 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564963_predicted  similar to ribosomal protein L10 (predicted)  LOC503169  similar to ribosomal protein L10  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC503169  similar to ribosomal protein L10      Symbol and Name status set to provisional 70820 PROVISIONAL