Rpl10 (ribosomal protein L10) - Rat Genome Database

Name: Rpl10
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Rpl10 (ribosomal protein L10) Rattus norvegicus

Analyze

Symbol:

Rpl10

Name:

ribosomal protein L10

RGD ID:

621178

Description:

Predicted to enable translation regulator activity. Predicted to be a structural constituent of ribosome. Involved in liver regeneration. Part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in autistic disorder and syndromic X-linked mental retardation 35. Orthologous to human RPL10 (ribosomal protein L10); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-nitrofluorene; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

60S ribosomal protein L10; large ribosomal subunit protein uL16

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPL10 (ribosomal protein L10)	HGNC	HomoloGene, Inparanoid, NCBI, Panther, PhylomeDB
Mus musculus (house mouse):	Rpl10 (ribosomal protein L10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rpl10 (ribosomal protein L10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPL10 (ribosomal protein L10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPL10 (ribosomal protein L10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rpl10 (ribosomal protein L10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPL10 (ribosomal protein L10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RPL10 (ribosomal protein L10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rpl10 (ribosomal protein L10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RPL10L (ribosomal protein L10 like)	HGNC	OrthoDB
Homo sapiens (human):	PRMT2 (protein arginine methyltransferase 2)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Rpl10 (ribosomal protein L10)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RPL10 (ribosomal protein L10)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rpl10-ps3 (ribosomal protein L10, pseudogene 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rpl10 (ribosomal protein L10)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rpl-10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RPL10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RpL10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rpl10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Related Pseudogenes:

Rpl10-ps13

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	X	152,054,562 - 152,056,769 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	152,054,452 - 152,056,761 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	154,195,691 - 154,197,898 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	157,758,924 - 157,761,131 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	155,430,723 - 155,432,930 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	156,438,251 - 156,440,461 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	156,438,251 - 156,440,461 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	152,178,398 - 152,180,608 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	160,336,632 - 160,338,842 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	160,413,020 - 160,415,223 (-)	NCBI
Celera	1	135,839,998 - 135,842,208 (-)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adrenoleukodystrophy (ISO)

autistic disorder (ISO)

Barth syndrome (ISO)

cerebral creatine deficiency syndrome 1 (ISO)

dyskeratosis congenita (ISO)

Emery-Dreifuss muscular dystrophy (ISO)

favism (ISO)

genetic disease (ISO)

immunodeficiency 33 (ISO)

paraplegia (ISO)

periventricular nodular heterotopia (ISO)

Prostatic Neoplasms (ISO)

severe congenital encephalopathy due to MECP2 mutation (ISO)

Splenomegaly (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

syndromic X-linked mental retardation 35 (ISO)

T-cell acute lymphoblastic leukemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2-nitrofluorene (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,3'-diindolylmethane (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP)

4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one (EXP)

acetamide (EXP)

acrolein (ISO)

aflatoxin B1 (EXP,ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

CGP 52608 (ISO)

chromium(6+) (ISO)

clofibric acid (EXP)

cocaine (EXP)

crocidolite asbestos (ISO)

cylindrospermopsin (ISO)

decabromodiphenyl ether (ISO)

dichlorine (EXP)

diethylstilbestrol (EXP)

dihydroartemisinin (ISO)

disodium selenite (ISO)

enzyme inhibitor (ISO)

folic acid (ISO)

glyphosate (EXP)

ivermectin (ISO)

lead(0) (ISO)

methapyrilene (EXP)

methyl methanesulfonate (ISO)

N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (ISO)

N-nitrosodiethylamine (EXP)

N-nitrosodimethylamine (EXP)

nickel sulfate (ISO)

ozone (EXP,ISO)

paclitaxel (ISO)

perfluorooctane-1-sulfonic acid (ISO)

piperonyl butoxide (EXP)

pirinixic acid (EXP)

potassium chromate (ISO)

potassium dichromate (ISO)

propiconazole (ISO)

resveratrol (ISO)

sodium arsenite (EXP,ISO)

sodium fluoride (ISO)

thapsigargin (EXP)

triptonide (ISO)

urethane (ISO)

ursodeoxycholic acid (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

embryonic brain development (ISO,ISS)

liver regeneration (IEP)

negative regulation of apoptotic process (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

regulation of translation (ISO,ISS)

ribosomal large subunit assembly (IBA)

translation (IEA)

Cellular Component

cytoplasm (ISO)

cytoplasmic side of rough endoplasmic reticulum membrane (ISO)

cytosol (ISO)

cytosolic large ribosomal subunit (IBA,IDA,ISO)

cytosolic ribosome (ISO)

endoplasmic reticulum (ISO)

large ribosomal subunit (ISO)

nucleus (ISO)

protein-containing complex (ISO)

smooth endoplasmic reticulum (ISO)

synapse (ISO)

Molecular Function

protein binding (ISO)

structural constituent of ribosome (IBA,ISO,ISS)

translation regulator activity (ISO,ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

translation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Structures of the human and Drosophila 80S ribosome.	Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2.	The primary structure of rat ribosomal protein L10: relationship to a Jun-binding protein and to a putative Wilms' tumor suppressor.	Chan YL, etal., Biochem Biophys Res Commun 1996 Aug 23;225(3):952-6.
3.	Coordinate regulation of ribosomal protein mRNA level in regenerating rat liver. Study with the corresponding mouse cloned cDNAs.	Faliks D and Meyuhas O, Nucleic Acids Res. 1982 Feb 11;10(3):789-801.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
9.	Photoincorporation of tetracycline into rat-liver ribosomes and subunits.	Reboud AM, etal., Eur J Biochem. 1982 May 17;124(2):389-96.
10.	GOA pipeline	RGD automated data pipeline
11.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	Comprehensive gene review and curation	RGD comprehensive gene curation
14.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:9443083	PMID:10234813	PMID:10508860	PMID:12962325	PMID:15489334	PMID:16452087	PMID:19946888	PMID:22658674	PMID:22681889	PMID:24930395	PMID:25316788	PMID:26290468
PMID:30053369

Genomics

Comparative Map Data

Rpl10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	X	152,054,562 - 152,056,769 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	152,054,452 - 152,056,761 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	154,195,691 - 154,197,898 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	157,758,924 - 157,761,131 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	155,430,723 - 155,432,930 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	156,438,251 - 156,440,461 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	156,438,251 - 156,440,461 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	152,178,398 - 152,180,608 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	160,336,632 - 160,338,842 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	160,413,020 - 160,415,223 (-)	NCBI
Celera	1	135,839,998 - 135,842,208 (-)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

RPL10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	154,398,065 - 154,402,339 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	154,389,955 - 154,409,168 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	153,626,406 - 153,630,680 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	153,279,912 - 153,283,874 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	153,147,564 - 153,151,527	NCBI
Celera	X	153,787,629 - 153,791,737 (+)	NCBI		Celera
Cytogenetic Map	X	q28	NCBI
HuRef	X	142,204,017 - 142,208,069 (+)	NCBI		HuRef
CHM1_1	X	153,538,214 - 153,542,323 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	152,634,585 - 152,638,859 (+)	NCBI		T2T-CHM13v2.0

Rpl10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	73,314,463 - 73,316,741 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	73,314,418 - 73,316,741 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	74,270,816 - 74,273,135 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	74,270,812 - 74,273,135 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	71,516,155 - 71,518,474 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	70,523,577 - 70,525,846 (+)	NCBI		MGSCv36	mm8
Celera	X	65,524,593 - 65,526,912 (+)	NCBI		Celera
Cytogenetic Map	X	A7.3	NCBI
cM Map	X	37.94	NCBI

Rpl10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955580	903,412 - 906,439 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955580	903,618 - 906,439 (+)	NCBI	ChiLan1.0	ChiLan1.0

RPL10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	X	154,376,267 - 154,378,950 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	143,839,739 - 143,844,026 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	153,707,645 - 153,712,855 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

RPL10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	122,098,020 - 122,100,719 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	122,098,020 - 122,100,719 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	X	125,239,741 - 125,242,433 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	125,239,736 - 125,243,935 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	121,008,797 - 121,011,489 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	123,523,664 - 123,526,357 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	123,285,544 - 123,288,236 (+)	NCBI		UU_Cfam_GSD_1.0

Rpl10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	119,409,172 - 119,411,802 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936809	1,146,994 - 1,149,573 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPL10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	124,926,772 - 124,929,791 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	124,927,249 - 124,929,791 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RPL10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666065	66,623,532 - 66,627,348 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rpl10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624946	860,639 - 863,636 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	27
Count of miRNA genes:	25
Interacting mature miRNAs:	26
Transcripts:	ENSRNOT00000036352
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat
634346	Insul4	Insulin level QTL 4	0		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	X	126975089	152453651	Rat

Markers in Region

RH139827

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	152,056,983 - 152,057,167 (-)	MAPPER	mRatBN7.2
Rnor_6.0	X	156,437,841 - 156,438,024	NCBI	Rnor6.0
Rnor_5.0	1	152,177,988 - 152,178,171	UniSTS	Rnor5.0
RGSC_v3.4	X	160,336,222 - 160,336,405	UniSTS	RGSC3.4
Celera	1	135,839,588 - 135,839,771	UniSTS
Cytogenetic Map	X	q37	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High	2	28	20	20	8	20			43	20	32	3
Medium	1	15	37	21	11	21	8	11	31	15	9	8	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC058467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223155	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X87106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000083951 ⟹ ENSRNOP00000070105

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	152,054,452 - 152,056,761 (+)	Ensembl
Rnor_6.0 Ensembl	X	156,438,251 - 156,440,461 (-)	Ensembl

RefSeq Acc Id:

NM_031100 ⟹ NP_112362

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	152,054,562 - 152,056,769 (+)	NCBI
Rnor_6.0	X	156,438,251 - 156,440,461 (-)	NCBI
Rnor_5.0	1	152,178,398 - 152,180,608 (-)	NCBI
RGSC_v3.4	X	160,336,632 - 160,338,842 (-)	RGD
Celera	1	135,839,998 - 135,842,208 (-)	NCBI

Sequence:

show sequence

TCAGGCCTGGGAGCGTCTCTTTTCCTCTGGCACCCCATCGACGATCCTAGTTGTCATCATGGGC
CGCCGCCCCGCCCGGTGTTATCGCTATTGTAAGAACAAGCCATACCCAAAGTCTCGTTTCTGTC
GTGGTGTCCCTGATGCTAAGATCCGCATCTTTGACTTGGGACGGAAGAAAGCAAAAGTGGATGA
ATTTCCACTTTGTGGCCACATGGTGTCAGATGAATATGAACAACTCTCTTCTGAAGCTCTGGAG
GCTGCTCGTATTTGTGCCAACAAATACATGGTAAAGAGTTGTGGCAAGGATGGCTTTCATATCC
GGGTGAGGCTCCACCCTTTCCATGTCATCCGTATCAACAAGATGTTGTCCTGTGCTGGGGCTGA
CAGGCTCCAGACAGGTATGCGTGGTGCCTTTGGGAAACCCCAGGGGACAGTAGCCAGGGTTCAC
ATTGGCCAAGTCATCATGTCTATCCGAACCAAGCTGCAGAATAAGGAACATGTGATTGAGGCTC
TGCGCAGGGCCAAGTTCAAGTTCCCTGGCCGGCAGAAGATCCACATCTCAAAGAAATGGGGTTT
TACCAAGTTCAATGCAGATGAATTTGAAGACATGGTTGCTGAGAAGCGGCTCATTCCTGATGGC
TGTGGTGTCAAATATATCCCCAATCGTGGTCCTCTTGACAAGTGGAGAGCCCTGCATTCCTGAA
GGCTTCCACAGTGCGCTCCTATGCGCTATCAAATGAGGTTCAATAATAAAGTCTCGCGTTCAAA
A

hide sequence

Protein Sequences


Protein RefSeqs	NP_112362	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH58467	(Get FASTA)	NCBI Sequence Viewer
	CAA60587	(Get FASTA)	NCBI Sequence Viewer
	EDL84987	(Get FASTA)	NCBI Sequence Viewer
	Q6PDV7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_112362 ⟸ NM_031100

- UniProtKB:

P45634 (UniProtKB/Swiss-Prot), Q6PDV7 (UniProtKB/Swiss-Prot), A6KRS1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEA
LEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAR
VHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIP
DGCGVKYIPNRGPLDKWRALHS

hide sequence

RefSeq Acc Id:

ENSRNOP00000070105 ⟸ ENSRNOT00000083951

Protein Domains

Ribosomal protein L10e/L16

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6PDV7-F1-model_v2	AlphaFold	Q6PDV7	1-214	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621178	AgrOrtholog
BioCyc Gene	G2FUF-636	BioCyc
Ensembl Genes	ENSRNOG00000056765	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000070105	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000083951	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.60.300	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.90.1170.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:6918973	IMAGE-MGC_LOAD
InterPro	Ribosomal_L10e	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_L10e/L16	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_L10e/L16_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_L10e_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:81764	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72797	IMAGE-MGC_LOAD
NCBI Gene	81764	ENTREZGENE
PANTHER	60S RIBOSOMAL PROTEIN L10	UniProtKB/Swiss-Prot
	60S RIBOSOMAL PROTEIN L10	UniProtKB/TrEMBL
	60S RIBOSOMAL PROTEIN L10	UniProtKB/TrEMBL
	PTHR11726	UniProtKB/Swiss-Prot
Pfam	Ribosomal_L16	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rpl10	PhenoGen
PIRSF	Ribosomal_L10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	RIBOSOMAL_L10E	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Ribosomal protein L16p/L10e	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt	A6KRS1	ENTREZGENE, UniProtKB/TrEMBL
	P45634	ENTREZGENE
	Q6PDV7	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	P45634	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-01-20	Rpl10	ribosomal protein L10			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Rpl10	ribosomal protein L10			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_protein	213 amino acids	633814

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

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