Kansl2 (KAT8 regulatory NSL complex subunit 2) - Rat Genome Database

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Gene: Kansl2 (KAT8 regulatory NSL complex subunit 2) Rattus norvegicus
Analyze
Symbol: Kansl2
Name: KAT8 regulatory NSL complex subunit 2
RGD ID: 1303127
Description: Predicted to be involved in histone H4 acetylation; positive regulation of histone H3-K4 methylation; and regulation of dosage compensation by inactivation of X chromosome. Predicted to be located in several cellular components, including actin cytoskeleton; cytosol; and nucleoplasm. Predicted to be part of NSL complex. Orthologous to human KANSL2 (KAT8 regulatory NSL complex subunit 2); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC300206; LOC103690317; MGC94200; non-specific lethal 2 homolog; NSL complex protein NSL2; RGD1303127; similar to hypothetical protein FLJ20436; uncharacterized protein C12orf41 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Related Pseudogenes: LOC690203  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27129,669,031 - 129,685,828 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl7129,669,031 - 129,685,725 (-)Ensembl
Rnor_6.07140,196,943 - 140,213,686 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7140,196,953 - 140,213,050 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl7140,132,469 - 140,147,984 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X114,700,497 - 114,717,449 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47137,266,031 - 137,282,137 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17137,342,468 - 137,358,571 (-)NCBI
Celera7126,159,998 - 126,176,078 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:20018852  


Genomics

Comparative Map Data
Kansl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27129,669,031 - 129,685,828 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl7129,669,031 - 129,685,725 (-)Ensembl
Rnor_6.07140,196,943 - 140,213,686 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7140,196,953 - 140,213,050 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl7140,132,469 - 140,147,984 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X114,700,497 - 114,717,449 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47137,266,031 - 137,282,137 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17137,342,468 - 137,358,571 (-)NCBI
Celera7126,159,998 - 126,176,078 (-)NCBICelera
Cytogenetic Map7q36NCBI
KANSL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,653,211 - 48,682,238 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1248,653,211 - 48,682,238 (-)EnsemblGRCh38hg38GRCh38
GRCh371249,046,994 - 49,076,021 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361247,333,261 - 47,362,302 (-)NCBINCBI36hg18NCBI36
Celera1247,842,978 - 47,872,021 (-)NCBI
Cytogenetic Map12q13.11NCBI
HuRef1246,081,051 - 46,110,103 (-)NCBIHuRef
CHM1_11249,012,779 - 49,041,852 (-)NCBICHM1_1
T2T-CHM13v2.01248,615,234 - 48,644,264 (-)NCBI
Kansl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,415,539 - 98,432,649 (-)NCBIGRCm39mm39
GRCm39 Ensembl1598,415,539 - 98,432,145 (-)Ensembl
GRCm381598,517,658 - 98,534,770 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,517,658 - 98,534,264 (-)EnsemblGRCm38mm10GRCm38
MGSCv371598,349,532 - 98,364,652 (-)NCBIGRCm37mm9NCBIm37
MGSCv361598,346,846 - 98,362,272 (-)NCBImm8
Celera15100,666,646 - 100,681,756 (-)NCBICelera
Cytogenetic Map15F1NCBI
Kansl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555007,552,747 - 7,572,991 (-)NCBIChiLan1.0ChiLan1.0
KANSL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11240,941,614 - 40,970,079 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1240,941,614 - 40,970,079 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01240,063,603 - 40,092,393 (+)NCBIMhudiblu_PPA_v0panPan3
KANSL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1275,826,587 - 5,845,207 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl275,826,584 - 5,844,656 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2740,412,992 - 40,432,039 (-)NCBI
ROS_Cfam_1.0275,877,078 - 5,896,343 (+)NCBI
ROS_Cfam_1.0 Ensembl275,877,212 - 5,896,346 (+)Ensembl
UMICH_Zoey_3.1275,840,339 - 5,859,572 (+)NCBI
UNSW_CanFamBas_1.0275,830,851 - 5,850,372 (+)NCBI
UU_Cfam_GSD_1.02740,804,722 - 40,824,000 (-)NCBI
Kansl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494566,605,362 - 66,627,204 (+)NCBI
SpeTri2.0NW_0049365126,537,499 - 6,558,124 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KANSL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl579,281,588 - 79,314,995 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1579,281,584 - 79,315,011 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2582,748,272 - 82,779,984 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KANSL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11144,898,203 - 44,926,479 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037201,221,689 - 201,249,820 (+)NCBIVero_WHO_p1.0

Position Markers
RH128148  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7q36UniSTS
AA849021  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01486,593,683 - 86,593,795UniSTSRnor5.0
Rnor_5.0X114,700,659 - 114,700,771UniSTSRnor5.0
RGSC_v3.41486,310,262 - 86,310,374UniSTSRGSC3.4
RGSC_v3.47137,266,170 - 137,266,282UniSTSRGSC3.4
Celera1479,423,959 - 79,424,071UniSTS
Celera7126,160,137 - 126,160,249UniSTS
RH 3.4 Map14577.4UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map14q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:161
Count of miRNA genes:134
Interacting mature miRNAs:145
Transcripts:ENSRNOT00000014875, ENSRNOT00000073299
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 45 32 18 32 3 72 29 41 11
Low 8 12 9 1 9 8 8 2 6 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000081766   ⟹   ENSRNOP00000072703
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7140,132,469 - 140,147,984 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000086886   ⟹   ENSRNOP00000073779
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,669,031 - 129,685,725 (-)Ensembl
Rnor_6.0 Ensembl7140,197,530 - 140,213,045 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000090730   ⟹   ENSRNOP00000072729
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7129,669,049 - 129,685,723 (-)Ensembl
Rnor_6.0 Ensembl7140,196,953 - 140,213,050 (-)Ensembl
RefSeq Acc Id: NM_001004244   ⟹   NP_001004244
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27129,669,035 - 129,685,147 (-)NCBI
Rnor_6.07140,196,947 - 140,213,053 (-)NCBI
Rnor_5.0X114,700,497 - 114,717,449 (-)NCBI
RGSC_v3.47137,266,031 - 137,282,137 (-)RGD
Celera7126,159,998 - 126,176,078 (-)RGD
Sequence:
RefSeq Acc Id: XM_008765691   ⟹   XP_008763913
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27129,669,031 - 129,685,720 (-)NCBI
Rnor_6.07140,196,943 - 140,213,591 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765692   ⟹   XP_008763914
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27129,669,031 - 129,685,828 (-)NCBI
Rnor_6.07140,196,947 - 140,213,686 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765693   ⟹   XP_008763915
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27129,669,031 - 129,685,743 (-)NCBI
Rnor_6.07140,196,947 - 140,213,608 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765856   ⟹   XP_008764078
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.27129,669,031 - 129,685,710 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001004244   ⟸   NM_001004244
- UniProtKB: G3V7H0 (UniProtKB/Swiss-Prot),   Q6AY70 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008763914   ⟸   XM_008765692
- Peptide Label: isoform X1
- UniProtKB: G3V7H0 (UniProtKB/Swiss-Prot),   Q6AY70 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008763915   ⟸   XM_008765693
- Peptide Label: isoform X1
- UniProtKB: G3V7H0 (UniProtKB/Swiss-Prot),   Q6AY70 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008763913   ⟸   XM_008765691
- Peptide Label: isoform X1
- UniProtKB: G3V7H0 (UniProtKB/Swiss-Prot),   Q6AY70 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072729   ⟸   ENSRNOT00000090730
RefSeq Acc Id: ENSRNOP00000073779   ⟸   ENSRNOT00000086886
RefSeq Acc Id: XP_008764078   ⟸   XM_008765856
- Peptide Label: isoform X2
- UniProtKB: Q6AY70 (UniProtKB/Swiss-Prot),   A0A0G2K3Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072703   ⟸   ENSRNOT00000081766
Protein Domains
zf-C3Hc3H

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AY70-F1-model_v2 AlphaFold Q6AY70 1-488 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303127 AgrOrtholog
BioCyc Gene G2FUF-32133 BioCyc
Ensembl Genes ENSRNOG00000053541 Ensembl
  ENSRNOG00000060185 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000072729 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOP00000073779 ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000086886 ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOT00000090730 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7129861 IMAGE-MGC_LOAD
InterPro NSL2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Potential_DNA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:300206 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94200 IMAGE-MGC_LOAD
NCBI Gene 300206 ENTREZGENE
PANTHER PTHR13453 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C3Hc3H UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kansl2 PhenoGen
UniProt A0A0G2K3M8_RAT UniProtKB/TrEMBL
  A0A0G2K3Q1 ENTREZGENE, UniProtKB/TrEMBL
  G3V7H0 ENTREZGENE
  KANL2_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary G3V7H0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Kansl2  KAT8 regulatory NSL complex subunit 2  LOC103690317  KAT8 regulatory NSL complex subunit 2  Data Merged 737654 PROVISIONAL
2014-08-25 LOC103690317  KAT8 regulatory NSL complex subunit 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2011-12-06 Kansl2  KAT8 regulatory NSL complex subunit 2  RGD1303127  similar to hypothetical protein FLJ20436  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 RGD1303127  similar to hypothetical protein FLJ20436  MGC94200    Symbol updated 1299863 APPROVED
2005-09-30 MGC94200        Symbol and Name status set to provisional 70820 PROVISIONAL