Adsl (adenylosuccinate lyase) - Rat Genome Database

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Gene: Adsl (adenylosuccinate lyase) Rattus norvegicus
Analyze
Symbol: Adsl
Name: adenylosuccinate lyase
RGD ID: 1307617
Description: Enables (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity; N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity; and identical protein binding activity. Involved in several processes, including AMP biosynthetic process; response to hypoxia; and response to muscle activity. Predicted to be part of protein-containing complex. Predicted to be active in cytosol. Biomarker of breast cancer. Human ortholog(s) of this gene implicated in adenylosuccinase lyase deficiency. Orthologous to human ADSL (adenylosuccinate lyase); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC315150
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87114,359,440 - 114,383,618 (+)NCBIGRCr8
mRatBN7.27112,479,256 - 112,503,439 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7112,479,271 - 112,503,760 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7114,234,797 - 114,258,837 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07116,458,339 - 116,482,381 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07116,427,712 - 116,451,754 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07122,157,201 - 122,192,328 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7122,157,201 - 122,192,328 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07122,148,984 - 122,176,665 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47119,223,582 - 119,248,151 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17119,257,809 - 119,282,215 (+)NCBI
Celera7108,802,820 - 108,827,084 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsenous acid  (ISO)
benzatropine  (ISO)
benzene-1,2,4-triol  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
clofibric acid  (EXP)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (EXP)
haloperidol  (ISO)
hydralazine  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trimellitic anhydride  (ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Effect of diet on adenylosuccinase activity in various organs of rat and chicken. Brand LM and Lowenstein JM, J Biol Chem. 1978 Oct 10;253(19):6872-8.
2. Pediatric neurological syndromes and inborn errors of purine metabolism. Camici M, etal., Neurochem Int. 2010 Feb;56(3):367-78. Epub 2009 Dec 11.
3. Purification of adenylosuccinate lyase from rat skeletal muscle by a novel affinity column. Stabilization of the enzyme, and effects of anions and fluoro analogues of the substrate. Casey PJ and Lowenstein JM, Biochem J. 1987 Sep 1;246(2):263-9.
4. Metabolism of threo-beta-fluoroaspartate by H4 cells. Inhibition of adenylosuccinate lyase by fluoro analogs of its substrates. Casey PJ, etal., J Biol Chem. 1986 Oct 15;261(29):13637-42.
5. Importance of purine nucleotide cycle to energy production in skeletal muscle. Flanagan WF, etal., Am J Physiol. 1986 Nov;251(5 Pt 1):C795-802.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
8. Adenine nucleotide metabolism in hearts of diabetic rats. Comparison to diaphragm, liver, and kidney. Jenkins RL, etal., Diabetes. 1988 May;37(5):629-36.
9. A comparison of succinyladenylate lyase activity and serum sialic acid as markers of malignancy. Mack DO, etal., Biochem Med. 1985 Dec;34(3):327-34.
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
13. Adenylosuccinate lyase as an indicator of breast and prostate malignancies: a preliminary report. Reed VL, etal., Clin Biochem. 1987 Oct;20(5):349-51.
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. A comparison of hepatic adenylosuccinate lyase from rats fed either a chow diet or a semisynthetic basal diet low in riboflavin. Smith LD, etal., Int J Biochem. 1982;14(10):875-8.
17. Purine nucleotide cycle in rat renal cortex and medulla under conditions that mimic normal and low oxygen supply. Stepinski J, etal., Kidney Int. 1996 Oct;50(4):1195-201.
Additional References at PubMed
PMID:10888601   PMID:11428554   PMID:16973378   PMID:18614015  


Genomics

Comparative Map Data
Adsl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87114,359,440 - 114,383,618 (+)NCBIGRCr8
mRatBN7.27112,479,256 - 112,503,439 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7112,479,271 - 112,503,760 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7114,234,797 - 114,258,837 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07116,458,339 - 116,482,381 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07116,427,712 - 116,451,754 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07122,157,201 - 122,192,328 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7122,157,201 - 122,192,328 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07122,148,984 - 122,176,665 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47119,223,582 - 119,248,151 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17119,257,809 - 119,282,215 (+)NCBI
Celera7108,802,820 - 108,827,084 (+)NCBICelera
Cytogenetic Map7q34NCBI
ADSL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382240,346,500 - 40,387,527 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2240,346,461 - 40,390,463 (+)EnsemblGRCh38hg38GRCh38
GRCh372240,742,504 - 40,783,531 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362239,072,509 - 39,092,698 (+)NCBINCBI36Build 36hg18NCBI36
Build 342239,067,062 - 39,087,251NCBI
Celera2224,544,565 - 24,564,639 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2223,705,707 - 23,725,685 (+)NCBIHuRef
CHM1_12240,701,395 - 40,721,469 (+)NCBICHM1_1
T2T-CHM13v2.02240,817,910 - 40,858,924 (+)NCBIT2T-CHM13v2.0
Adsl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391580,832,691 - 80,855,148 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1580,832,691 - 80,855,147 (+)EnsemblGRCm39 Ensembl
GRCm381580,948,490 - 80,970,947 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1580,948,490 - 80,970,946 (+)EnsemblGRCm38mm10GRCm38
MGSCv371580,778,949 - 80,799,803 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361580,775,774 - 80,796,628 (+)NCBIMGSCv36mm8
Celera1583,069,002 - 83,089,662 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.95NCBI
Adsl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541326,067,516 - 26,088,527 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541326,067,463 - 26,084,669 (+)NCBIChiLan1.0ChiLan1.0
ADSL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22350,190,503 - 50,215,545 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12252,886,106 - 52,910,029 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02221,249,920 - 21,271,749 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12239,068,864 - 39,090,418 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2239,068,764 - 39,389,221 (+)Ensemblpanpan1.1panPan2
ADSL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11024,813,854 - 24,832,115 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1024,748,849 - 24,767,156 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01025,564,321 - 25,582,627 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1025,564,251 - 25,582,606 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11025,276,233 - 25,290,696 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01025,598,775 - 25,617,073 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01025,773,156 - 25,791,459 (-)NCBIUU_Cfam_GSD_1.0
Adsl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049458,413,366 - 8,430,396 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364921,423,780 - 1,440,825 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADSL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl58,025,508 - 8,047,603 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.158,027,799 - 8,045,480 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.255,260,243 - 5,278,007 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADSL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11922,920,971 - 22,940,468 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045102,650,098 - 102,671,844 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adsl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247528,098,088 - 8,118,091 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247528,098,612 - 8,117,635 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Adsl
112 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:49
Interacting mature miRNAs:54
Transcripts:ENSRNOT00000025193
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat

Markers in Region
AI172062  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27112,503,103 - 112,503,265 (+)MAPPERmRatBN7.2
Rnor_6.07122,191,993 - 122,192,154NCBIRnor6.0
Rnor_5.07122,176,330 - 122,176,491UniSTSRnor5.0
RGSC_v3.47119,247,816 - 119,247,977UniSTSRGSC3.4
Celera7108,826,749 - 108,826,910UniSTS
RH 3.4 Map7877.7UniSTS
Cytogenetic Map7q34UniSTS
RH130035  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2235,999,363 - 35,999,551 (+)MAPPERmRatBN7.2
mRatBN7.27112,484,367 - 112,484,555 (+)MAPPERmRatBN7.2
Rnor_6.07122,164,300 - 122,164,487NCBIRnor6.0
Rnor_5.07122,156,108 - 122,156,295UniSTSRnor5.0
RGSC_v3.47119,228,689 - 119,228,876UniSTSRGSC3.4
RGSC_v3.4235,849,204 - 35,849,391UniSTSRGSC3.4
Celera7108,807,930 - 108,808,117UniSTS
Celera231,955,437 - 31,955,624UniSTS
RH 3.4 Map7874.7UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map7q34UniSTS
BI296865  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2236,001,246 - 36,001,444 (+)MAPPERmRatBN7.2
Rnor_6.07122,166,183 - 122,166,380NCBIRnor6.0
Rnor_5.07122,157,991 - 122,158,188UniSTSRnor5.0
RGSC_v3.4235,851,087 - 35,851,284UniSTSRGSC3.4
Celera231,957,320 - 31,957,517UniSTS
RH 3.4 Map2148.7UniSTS
Cytogenetic Map7q34UniSTS
RH137134  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27112,503,169 - 112,503,372 (+)MAPPERmRatBN7.2
Rnor_6.07122,192,059 - 122,192,261NCBIRnor6.0
Rnor_5.07122,176,396 - 122,176,598UniSTSRnor5.0
RGSC_v3.47119,247,882 - 119,248,084UniSTSRGSC3.4
Celera7108,826,815 - 108,827,017UniSTS
Cytogenetic Map7q34UniSTS
RH140918  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27112,503,170 - 112,503,371 (+)MAPPERmRatBN7.2
Rnor_6.07122,192,060 - 122,192,260NCBIRnor6.0
Rnor_5.07122,176,397 - 122,176,597UniSTSRnor5.0
RGSC_v3.47119,247,883 - 119,248,083UniSTSRGSC3.4
Celera7108,826,816 - 108,827,016UniSTS
RH 3.4 Map7877.7UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000025193   ⟹   ENSRNOP00000025193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7112,479,280 - 112,503,380 (+)Ensembl
Rnor_6.0 Ensembl7122,157,201 - 122,192,328 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094841   ⟹   ENSRNOP00000091765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7112,479,297 - 112,503,760 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110086   ⟹   ENSRNOP00000081561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7112,479,297 - 112,503,760 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113152   ⟹   ENSRNOP00000094784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7112,479,297 - 112,503,349 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120130   ⟹   ENSRNOP00000077723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7112,479,271 - 112,503,378 (+)Ensembl
RefSeq Acc Id: NM_001130503   ⟹   NP_001123975
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87114,359,440 - 114,383,618 (+)NCBI
mRatBN7.27112,479,259 - 112,503,439 (+)NCBI
Rnor_6.07122,157,201 - 122,192,328 (+)NCBI
Rnor_5.07122,148,984 - 122,176,665 (+)NCBI
RGSC_v3.47119,223,582 - 119,248,151 (+)RGD
Celera7108,802,820 - 108,827,084 (+)RGD
Sequence:
RefSeq Acc Id: XM_063263618   ⟹   XP_063119688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87114,367,746 - 114,383,557 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001123975 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119688 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM15741 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025193.6
  ENSRNOP00000077723.1
  ENSRNOP00000081561
  ENSRNOP00000081561.1
  ENSRNOP00000091765.1
  ENSRNOP00000094784.1
RefSeq Acc Id: NP_001123975   ⟸   NM_001130503
- UniProtKB: A0A8I5ZTN5 (UniProtKB/TrEMBL),   A6HSY1 (UniProtKB/TrEMBL),   A0A8I6GJ79 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025193   ⟸   ENSRNOT00000025193
Ensembl Acc Id: ENSRNOP00000091765   ⟸   ENSRNOT00000094841
Ensembl Acc Id: ENSRNOP00000077723   ⟸   ENSRNOT00000120130
Ensembl Acc Id: ENSRNOP00000094784   ⟸   ENSRNOT00000113152
Ensembl Acc Id: ENSRNOP00000081561   ⟸   ENSRNOT00000110086
RefSeq Acc Id: XP_063119688   ⟸   XM_063263618
- Peptide Label: isoform X1
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZW08-F1-model_v2 AlphaFold D3ZW08 1-484 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695501
Promoter ID:EPDNEW_R6026
Type:initiation region
Name:Adsl_1
Description:adenylosuccinate lyase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07122,157,217 - 122,157,277EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307617 AgrOrtholog
BioCyc Gene G2FUF-32690 BioCyc
BioCyc Pathway PWY-7219 [adenosine ribonucleotides de novo biosynthesis] BioCyc
BioCyc Pathway Image PWY-7219 BioCyc
Ensembl Genes ENSRNOG00000018655 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025193.6 UniProtKB/TrEMBL
  ENSRNOT00000094841.1 UniProtKB/TrEMBL
  ENSRNOT00000110086 ENTREZGENE
  ENSRNOT00000110086.1 UniProtKB/TrEMBL
  ENSRNOT00000113152.1 UniProtKB/TrEMBL
  ENSRNOT00000120130.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.275.10 UniProtKB/TrEMBL
  1.10.275.60 UniProtKB/TrEMBL
  6.10.250.1570 UniProtKB/TrEMBL
  Fumarase/aspartase (C-terminal domain) UniProtKB/TrEMBL
  Fumarase/aspartase (Central domain) UniProtKB/TrEMBL
InterPro AdenyloSucc_lyase_C_met/fun UniProtKB/TrEMBL
  Fumarase/histidase_N UniProtKB/TrEMBL
  Fumarate_lyase UniProtKB/TrEMBL
  Fumarate_lyase_CS UniProtKB/TrEMBL
  L-Aspartase-like UniProtKB/TrEMBL
  Lyase1_N UniProtKB/TrEMBL
  Pur_lyase UniProtKB/TrEMBL
KEGG Report rno:315150 UniProtKB/TrEMBL
NCBI Gene 315150 ENTREZGENE
PANTHER ADENYLOSUCCINATE LYASE UniProtKB/TrEMBL
  ADENYLOSUCCINATE LYASE UniProtKB/TrEMBL
Pfam ADSL_C UniProtKB/TrEMBL
  Lyase_1 UniProtKB/TrEMBL
PhenoGen Adsl PhenoGen
PRINTS ARGSUCLYASE UniProtKB/TrEMBL
  FUMRATELYASE UniProtKB/TrEMBL
PROSITE FUMARATE_LYASES UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018655 RatGTEx
SMART ADSL_C UniProtKB/TrEMBL
Superfamily-SCOP L-Aspartase-like UniProtKB/TrEMBL
UniProt A0A8I5Y1I4_RAT UniProtKB/TrEMBL
  A0A8I5ZTN5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AM95_RAT UniProtKB/TrEMBL
  A0A8I6GJ79 ENTREZGENE, UniProtKB/TrEMBL
  A6HSY1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZW08_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-06-02 Adsl  adenylosuccinate lyase  test  test  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-08     Adsl  adenylosuccinate lyase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-26 Adsl  adenylosuccinate lyase  Adsl_predicted  adenylosuccinate lyase (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Adsl_predicted  adenylosuccinate lyase (predicted)      Symbol and Name status set to approved 70820 APPROVED