D7Rat94 Marker Search Result - Rat Genome Database

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Marker: D7Rat94

Symbol: D7Rat94
Previously known as: R0082-D07; oxsts7400; 
RGD ID: 39048
Expected Size: 116 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27134,976,056 - 134,976,166 (+)MAPPERmRatBN7.2
Rnor_6.07145,692,398 - 145,692,507NCBIRnor6.0
Rnor_5.07143,465,961 - 143,466,070UniSTSRnor5.0
RGSC_v3.47142,816,043 - 142,816,152UniSTSRGSC3.4
RGSC_v3.47142,816,042 - 142,816,152RGDRGSC3.4
RGSC_v3.17142,896,232 - 142,896,341RGD
Celera7131,417,862 - 131,417,971UniSTS
RH 3.4 Map71064.8RGD
RH 3.4 Map71064.8UniSTS
SHRSP x BN Map788.4599UniSTS
SHRSP x BN Map788.4599RGD
FHH x ACI Map774.71RGD
Is Marker For: Strains:   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Bw6  
Genes:   Chfr-ps1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AACTTATGAGGGCATTTGCG
Reverse Primer GCCTTATTTAACTTTTTGCTTCTC
 
Template 
AGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTATAATATTTCTTTTCTGTTATCTTA
AGCCTTATTTAACTTTTTGCTTCTCTCTGTATGTATCTCTGTGTGAGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTCTGCATATGCACGCAAATGCCCTCATAAGTTGGCAGAGGACA
TTGGCACATTCAGTTGTGAGCCCATGGCATGGATACTGGTAACCAAGGGGTACCGAGCTCGAAT
TCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACA
TACGANCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGNGCTAACTCACATTAAT
TGNGTTGGCTCANTGCC

Region

Nucleotide Sequences
GenBank Nucleotide CH474157.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH616206.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100912442 UniSTS
  369161 UniSTS
UniSTS 119069 UniSTS