Pcbp2 (poly(rC) binding protein 2) - Rat Genome Database

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Gene: Pcbp2 (poly(rC) binding protein 2) Rattus norvegicus
Analyze
Symbol: Pcbp2
Name: poly(rC) binding protein 2
RGD ID: 1309626
Description: Predicted to enable C-rich single-stranded DNA binding activity; mRNA binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in several processes, including IRES-dependent viral translational initiation; regulation of defense response; and viral RNA genome replication. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Is active in postsynaptic density. Orthologous to human PCBP2 (poly(rC) binding protein 2); PARTICIPATES IN iron homeostasis pathway; iron storage pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC363005; poly(rC)-binding protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87135,483,702 - 135,508,254 (+)NCBIGRCr8
mRatBN7.27133,605,375 - 133,631,312 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7133,605,573 - 133,629,863 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7135,361,121 - 135,385,492 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07137,590,488 - 137,614,859 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07137,576,736 - 137,601,109 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07144,077,901 - 144,103,723 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,078,496 - 144,101,893 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07141,870,034 - 141,895,861 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47141,232,766 - 141,253,910 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18127,018,657 - 127,020,009 (+)NCBI
Celera7130,032,877 - 130,056,334 (+)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO)
cytosol  (IEA,ISO)
nucleoplasm  (IBA,ISO)
nucleus  (IBA,ISO)
postsynaptic density  (EXP,IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Regulators of Iron Homeostasis: New Players in Metabolism, Cell Death, and Disease. Bogdan AR, etal., Trends Biochem Sci. 2016 Mar;41(3):274-86. doi: 10.1016/j.tibs.2015.11.012. Epub 2015 Dec 23.
2. Relative and absolute quantification of postsynaptic density proteome isolated from rat forebrain and cerebellum. Cheng D, etal., Mol Cell Proteomics. 2006 Jun;5(6):1158-70. doi: 10.1074/mcp.D500009-MCP200. Epub 2006 Feb 28.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Cellular iron uptake, trafficking and metabolism: Key molecules and mechanisms and their roles in disease. Lane DJ, etal., Biochim Biophys Acta. 2015 May;1853(5):1130-44. doi: 10.1016/j.bbamcr.2015.01.021. Epub 2015 Feb 4.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:7607214   PMID:8208614   PMID:8367306   PMID:8871564   PMID:12414943   PMID:19029303   PMID:19881509   PMID:19946888   PMID:21423176   PMID:21643860   PMID:22082260   PMID:22658674  
PMID:22681889   PMID:22720776   PMID:23376485   PMID:23533145   PMID:24625528   PMID:25463520   PMID:26250704   PMID:27209304   PMID:35089637  


Genomics

Comparative Map Data
Pcbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87135,483,702 - 135,508,254 (+)NCBIGRCr8
mRatBN7.27133,605,375 - 133,631,312 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7133,605,573 - 133,629,863 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7135,361,121 - 135,385,492 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07137,590,488 - 137,614,859 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07137,576,736 - 137,601,109 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07144,077,901 - 144,103,723 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,078,496 - 144,101,893 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07141,870,034 - 141,895,861 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47141,232,766 - 141,253,910 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18127,018,657 - 127,020,009 (+)NCBI
Celera7130,032,877 - 130,056,334 (+)NCBICelera
Cytogenetic Map7q36NCBI
PCBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381253,452,102 - 53,481,162 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1253,452,102 - 53,481,162 (+)EnsemblGRCh38hg38GRCh38
GRCh371253,845,886 - 53,874,946 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361252,132,161 - 52,159,872 (+)NCBINCBI36Build 36hg18NCBI36
Celera1253,496,252 - 53,525,328 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1250,885,765 - 50,914,832 (+)NCBIHuRef
CHM1_11253,813,009 - 53,841,996 (+)NCBICHM1_1
T2T-CHM13v2.01253,418,139 - 53,447,209 (+)NCBIT2T-CHM13v2.0
Pcbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915102,378,974 - 102,408,503 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15102,378,974 - 102,408,496 (+)EnsemblGRCm39 Ensembl
GRCm3815102,470,450 - 102,500,068 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15102,470,539 - 102,500,061 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715102,301,063 - 102,330,490 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615102,298,818 - 102,326,915 (+)NCBIMGSCv36mm8
Celera15104,628,756 - 104,658,034 (+)NCBICelera
Cytogenetic Map15F3NCBI
cM Map1557.61NCBI
Pcbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955458750,226 - 773,483 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955458747,770 - 773,885 (+)NCBIChiLan1.0ChiLan1.0
PCBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21040,704,803 - 40,732,587 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11240,701,567 - 40,729,348 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01235,273,540 - 35,301,292 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11236,061,236 - 36,083,171 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1236,058,463 - 36,082,672 (-)Ensemblpanpan1.1panPan2
PCBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,736,264 - 1,759,416 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2744,491,349 - 44,514,087 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0271,740,122 - 1,762,814 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl271,740,124 - 1,762,938 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,757,638 - 1,780,344 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,740,925 - 1,764,273 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02744,893,044 - 44,915,768 (+)NCBIUU_Cfam_GSD_1.0
Pcbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494562,409,574 - 62,432,674 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651210,732,151 - 10,756,912 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651210,732,129 - 10,754,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl518,673,981 - 18,704,978 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1518,670,124 - 18,703,745 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2519,109,650 - 19,139,327 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PCBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11149,548,615 - 49,580,962 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037196,471,848 - 196,501,677 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcbp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249041,555,635 - 1,578,982 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249041,553,253 - 1,579,212 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pcbp2
106 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:14
Count of miRNA genes:12
Interacting mature miRNAs:14
Transcripts:ENSRNOT00000055302
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat

Markers in Region
BF389691  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27133,617,553 - 133,617,724 (+)MAPPERmRatBN7.2
Rnor_6.07144,089,966 - 144,090,136NCBIRnor6.0
Rnor_5.07141,882,099 - 141,882,269UniSTSRnor5.0
RGSC_v3.47141,241,933 - 141,242,103UniSTSRGSC3.4
Celera7130,044,160 - 130,044,330UniSTS
RH 3.4 Map71063.0UniSTS
Cytogenetic Map7q36UniSTS
UniSTS:479190  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2817,857,161 - 17,857,720 (+)MAPPERmRatBN7.2
mRatBN7.23126,175,996 - 126,176,439 (+)MAPPERmRatBN7.2
Rnor_6.03131,919,046 - 131,919,488NCBIRnor6.0
Rnor_6.0820,133,248 - 20,133,806NCBIRnor6.0
Rnor_5.0820,206,505 - 20,207,063UniSTSRnor5.0
Rnor_5.03138,381,617 - 138,382,059UniSTSRnor5.0
RGSC_v3.43126,978,862 - 126,979,304UniSTSRGSC3.4
RGSC_v3.4818,313,309 - 18,313,867UniSTSRGSC3.4
Celera819,269,553 - 19,270,111UniSTS
Celera3124,858,833 - 124,859,275UniSTS
Cytogenetic Map3q36UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map7q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC109743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000055302   ⟹   ENSRNOP00000052173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7133,606,079 - 133,629,482 (+)Ensembl
Rnor_6.0 Ensembl7144,078,496 - 144,101,893 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077687   ⟹   ENSRNOP00000075740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7133,608,145 - 133,623,832 (+)Ensembl
Rnor_6.0 Ensembl7144,080,614 - 144,101,773 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099581   ⟹   ENSRNOP00000095661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7133,605,573 - 133,629,863 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105769   ⟹   ENSRNOP00000085087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7133,605,592 - 133,629,723 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109477   ⟹   ENSRNOP00000093976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7133,605,592 - 133,629,723 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111669   ⟹   ENSRNOP00000081612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7133,605,592 - 133,629,723 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000120216   ⟹   ENSRNOP00000095172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7133,605,588 - 133,629,723 (+)Ensembl
RefSeq Acc Id: NM_001013223   ⟹   NP_001013241
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,901 - 135,508,254 (+)NCBI
mRatBN7.27133,605,375 - 133,629,733 (+)NCBI
Rnor_6.07144,077,906 - 144,102,139 (+)NCBI
Rnor_5.07141,870,034 - 141,895,861 (+)NCBI
RGSC_v3.47141,232,766 - 141,253,910 (+)RGD
Celera7130,032,877 - 130,056,334 (+)RGD
Sequence:
RefSeq Acc Id: XM_006242418   ⟹   XP_006242480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,861 - 135,508,254 (+)NCBI
mRatBN7.27133,605,484 - 133,631,312 (+)NCBI
Rnor_6.07144,077,901 - 144,103,723 (+)NCBI
Rnor_5.07141,870,034 - 141,895,861 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242419   ⟹   XP_006242481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,759 - 135,508,254 (+)NCBI
mRatBN7.27133,605,482 - 133,631,312 (+)NCBI
Rnor_6.07144,077,950 - 144,103,723 (+)NCBI
Rnor_5.07141,870,034 - 141,895,861 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242420   ⟹   XP_006242482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,702 - 135,508,254 (+)NCBI
mRatBN7.27133,605,484 - 133,631,312 (+)NCBI
Rnor_6.07144,077,901 - 144,103,723 (+)NCBI
Rnor_5.07141,870,034 - 141,895,861 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242422   ⟹   XP_006242484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,900 - 135,508,254 (+)NCBI
mRatBN7.27133,605,484 - 133,631,312 (+)NCBI
Rnor_6.07144,077,901 - 144,103,723 (+)NCBI
Rnor_5.07141,870,034 - 141,895,861 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242425   ⟹   XP_006242487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,839 - 135,508,254 (+)NCBI
mRatBN7.27133,605,484 - 133,631,312 (+)NCBI
Rnor_6.07144,077,901 - 144,103,723 (+)NCBI
Rnor_5.07141,870,034 - 141,895,861 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242427   ⟹   XP_006242489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,848 - 135,508,254 (+)NCBI
mRatBN7.27133,605,484 - 133,631,312 (+)NCBI
Rnor_6.07144,077,901 - 144,103,723 (+)NCBI
Rnor_5.07141,870,034 - 141,895,861 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595006   ⟹   XP_017450495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,716 - 135,504,879 (+)NCBI
mRatBN7.27133,605,483 - 133,626,358 (+)NCBI
Rnor_6.07144,077,901 - 144,098,769 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595007   ⟹   XP_017450496
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,904 - 135,504,879 (+)NCBI
mRatBN7.27133,605,481 - 133,626,358 (+)NCBI
Rnor_6.07144,077,949 - 144,098,769 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595010   ⟹   XP_017450499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,711 - 135,504,879 (+)NCBI
mRatBN7.27133,605,483 - 133,626,358 (+)NCBI
Rnor_6.07144,077,901 - 144,098,769 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595011   ⟹   XP_017450500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,710 - 135,504,879 (+)NCBI
mRatBN7.27133,605,481 - 133,626,358 (+)NCBI
Rnor_6.07144,077,949 - 144,098,769 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595014   ⟹   XP_017450503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,900 - 135,504,879 (+)NCBI
mRatBN7.27133,605,483 - 133,626,358 (+)NCBI
Rnor_6.07144,077,901 - 144,098,769 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039079651   ⟹   XP_038935579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,748 - 135,508,254 (+)NCBI
mRatBN7.27133,605,484 - 133,631,312 (+)NCBI
RefSeq Acc Id: XM_063263962   ⟹   XP_063120032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,890 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263963   ⟹   XP_063120033
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,888 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263964   ⟹   XP_063120034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,484,875 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263965   ⟹   XP_063120035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,890 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263966   ⟹   XP_063120036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,900 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263967   ⟹   XP_063120037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,903 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263969   ⟹   XP_063120039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,891 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263970   ⟹   XP_063120040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,900 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263971   ⟹   XP_063120041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,703 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263972   ⟹   XP_063120042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,711 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263973   ⟹   XP_063120043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,902 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263974   ⟹   XP_063120044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,890 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263975   ⟹   XP_063120045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,885 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263976   ⟹   XP_063120046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,885 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263978   ⟹   XP_063120048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,716 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263979   ⟹   XP_063120049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,902 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263980   ⟹   XP_063120050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,887 - 135,504,879 (+)NCBI
RefSeq Acc Id: XM_063263981   ⟹   XP_063120051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,928 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263982   ⟹   XP_063120052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,928 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263983   ⟹   XP_063120053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,904 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263985   ⟹   XP_063120055
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,484,910 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263986   ⟹   XP_063120056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,929 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263987   ⟹   XP_063120057
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,928 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263988   ⟹   XP_063120058
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,904 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263989   ⟹   XP_063120059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,900 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263990   ⟹   XP_063120060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,904 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263991   ⟹   XP_063120061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,928 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263992   ⟹   XP_063120062
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,928 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263994   ⟹   XP_063120064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,749 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263995   ⟹   XP_063120065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,904 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263996   ⟹   XP_063120066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,929 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263997   ⟹   XP_063120067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,929 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263998   ⟹   XP_063120068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,904 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063263999   ⟹   XP_063120069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,904 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063264000   ⟹   XP_063120070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,848 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063264001   ⟹   XP_063120071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,904 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063264003   ⟹   XP_063120073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,900 - 135,508,254 (+)NCBI
RefSeq Acc Id: XM_063264004   ⟹   XP_063120074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,483,904 - 135,508,254 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001013241 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242480 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242481 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242482 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242484 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242487 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242489 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450495 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450496 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450499 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450500 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450503 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935579 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120032 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120033 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120034 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120035 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120036 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120037 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120039 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120040 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120041 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120042 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120043 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120044 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120045 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120046 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120048 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120049 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120050 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120051 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120052 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120053 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120055 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120056 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120057 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120058 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120059 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120060 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120061 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120062 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120064 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120065 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120066 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120067 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120068 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120069 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120070 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120071 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120073 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120074 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH78906 (Get FASTA)   NCBI Sequence Viewer  
  AAH78909 (Get FASTA)   NCBI Sequence Viewer  
  AAH97410 (Get FASTA)   NCBI Sequence Viewer  
  EDL86832 (Get FASTA)   NCBI Sequence Viewer  
  EDL86833 (Get FASTA)   NCBI Sequence Viewer  
  EDL86835 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000052173.3
  ENSRNOP00000075740.2
  ENSRNOP00000081612
  ENSRNOP00000081612.1
  ENSRNOP00000085087
  ENSRNOP00000085087.1
  ENSRNOP00000093976
  ENSRNOP00000093976.1
  ENSRNOP00000095172
  ENSRNOP00000095172.1
  ENSRNOP00000095661.1
RefSeq Acc Id: NP_001013241   ⟸   NM_001013223
- UniProtKB: Q6AYU5 (UniProtKB/TrEMBL),   D4ACH3 (UniProtKB/TrEMBL),   A0A0G2KBC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242480   ⟸   XM_006242418
- Peptide Label: isoform X20
- UniProtKB: Q6AYU2 (UniProtKB/TrEMBL),   A0A8I5ZS12 (UniProtKB/TrEMBL),   A0A0G2KBC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242482   ⟸   XM_006242420
- Peptide Label: isoform X21
- UniProtKB: A0A0G2KBC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242484   ⟸   XM_006242422
- Peptide Label: isoform X24
- UniProtKB: A0A8I6AGT9 (UniProtKB/TrEMBL),   A6KCV8 (UniProtKB/TrEMBL),   A0A0G2KBC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242487   ⟸   XM_006242425
- Peptide Label: isoform X29
- UniProtKB: A0A8I6AP00 (UniProtKB/TrEMBL),   A6KCV9 (UniProtKB/TrEMBL),   A0A0G2KBC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242489   ⟸   XM_006242427
- Peptide Label: isoform X33
- UniProtKB: A0A0G2KBC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242481   ⟸   XM_006242419
- Peptide Label: isoform X20
- UniProtKB: Q6AYU2 (UniProtKB/TrEMBL),   A0A8I5ZS12 (UniProtKB/TrEMBL),   A0A0G2KBC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450495   ⟸   XM_017595006
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017450499   ⟸   XM_017595010
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017450503   ⟸   XM_017595014
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017450496   ⟸   XM_017595007
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017450500   ⟸   XM_017595011
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSRNOP00000052173   ⟸   ENSRNOT00000055302
RefSeq Acc Id: ENSRNOP00000075740   ⟸   ENSRNOT00000077687
RefSeq Acc Id: XP_038935579   ⟸   XM_039079651
- Peptide Label: isoform X30
- UniProtKB: A0A0G2KBC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000085087   ⟸   ENSRNOT00000105769
RefSeq Acc Id: ENSRNOP00000095661   ⟸   ENSRNOT00000099581
RefSeq Acc Id: ENSRNOP00000081612   ⟸   ENSRNOT00000111669
RefSeq Acc Id: ENSRNOP00000095172   ⟸   ENSRNOT00000120216
RefSeq Acc Id: ENSRNOP00000093976   ⟸   ENSRNOT00000109477
RefSeq Acc Id: XP_063120041   ⟸   XM_063263971
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063120042   ⟸   XM_063263972
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063120048   ⟸   XM_063263978
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063120064   ⟸   XM_063263994
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063120070   ⟸   XM_063264000
- Peptide Label: isoform X35
RefSeq Acc Id: XP_063120045   ⟸   XM_063263975
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063120046   ⟸   XM_063263976
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063120050   ⟸   XM_063263980
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063120033   ⟸   XM_063263963
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063120032   ⟸   XM_063263962
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063120035   ⟸   XM_063263965
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063120044   ⟸   XM_063263974
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063120039   ⟸   XM_063263969
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063120059   ⟸   XM_063263989
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063120073   ⟸   XM_063264003
- Peptide Label: isoform X36
RefSeq Acc Id: XP_063120036   ⟸   XM_063263966
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063120040   ⟸   XM_063263970
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063120049   ⟸   XM_063263979
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063120043   ⟸   XM_063263973
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063120037   ⟸   XM_063263967
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063120053   ⟸   XM_063263983
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063120058   ⟸   XM_063263988
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063120060   ⟸   XM_063263990
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063120065   ⟸   XM_063263995
- Peptide Label: isoform X30
RefSeq Acc Id: XP_063120068   ⟸   XM_063263998
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063120071   ⟸   XM_063264001
- Peptide Label: isoform X35
RefSeq Acc Id: XP_063120069   ⟸   XM_063263999
- Peptide Label: isoform X34
RefSeq Acc Id: XP_063120074   ⟸   XM_063264004
- Peptide Label: isoform X36
RefSeq Acc Id: XP_063120051   ⟸   XM_063263981
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063120052   ⟸   XM_063263982
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063120057   ⟸   XM_063263987
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063120061   ⟸   XM_063263991
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063120062   ⟸   XM_063263992
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063120056   ⟸   XM_063263986
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063120066   ⟸   XM_063263996
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063120067   ⟸   XM_063263997
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063120034   ⟸   XM_063263964
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063120055   ⟸   XM_063263985
- Peptide Label: isoform X21
Protein Domains
K Homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYU5-F1-model_v2 AlphaFold Q6AYU5 1-365 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695708
Promoter ID:EPDNEW_R6227
Type:initiation region
Name:Pcbp2_1
Description:poly binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07144,078,432 - 144,078,492EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309626 AgrOrtholog
BioCyc Gene G2FUF-31934 BioCyc
Ensembl Genes ENSRNOG00000036852 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000055302.4 UniProtKB/TrEMBL
  ENSRNOT00000077687.2 UniProtKB/TrEMBL
  ENSRNOT00000099581.1 UniProtKB/TrEMBL
  ENSRNOT00000105769 ENTREZGENE
  ENSRNOT00000105769.1 UniProtKB/TrEMBL
  ENSRNOT00000109477.1 UniProtKB/TrEMBL
  ENSRNOT00000111669.1 UniProtKB/TrEMBL
  ENSRNOT00000120216.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7112287 IMAGE-MGC_LOAD
  IMAGE:7127139 IMAGE-MGC_LOAD
  IMAGE:7454176 IMAGE-MGC_LOAD
InterPro IPR004087 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
  KH_type_1 UniProtKB/TrEMBL
KEGG Report rno:363005 UniProtKB/TrEMBL
MGC_CLONE MGC:114455 IMAGE-MGC_LOAD
  MGC:93663 IMAGE-MGC_LOAD
  MGC:93668 IMAGE-MGC_LOAD
NCBI Gene 363005 ENTREZGENE
PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN UniProtKB/TrEMBL
  POLY(RC)-BINDING PROTEIN 2 UniProtKB/TrEMBL
Pfam KH_1 UniProtKB/TrEMBL
PhenoGen Pcbp2 PhenoGen
PROSITE KH_TYPE_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000036852 RatGTEx
SMART SM00322 UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/TrEMBL
UniProt A0A0G2KBC5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZS12 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZZC0_RAT UniProtKB/TrEMBL
  A0A8I6AGT9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AP00 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6APK5_RAT UniProtKB/TrEMBL
  A6KCV8 ENTREZGENE, UniProtKB/TrEMBL
  A6KCV9 ENTREZGENE, UniProtKB/TrEMBL
  D4ACH3 ENTREZGENE
  Q4V8F6_RAT UniProtKB/TrEMBL
  Q6AYU2 ENTREZGENE, UniProtKB/TrEMBL
  Q6AYU5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D4ACH3 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Pcbp2  poly(rC) binding protein 2  Pcbp2_predicted  poly(rC) binding protein 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Pcbp2_predicted  poly(rC) binding protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED