Rpl26-ps1 (ribosomal protein L26, pseudogene 1) - Rat Genome Database

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Gene: Rpl26-ps1 (ribosomal protein L26, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl26-ps1
Name: ribosomal protein L26, pseudogene 1
RGD ID: 1590264
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation and ribosomal large subunit biogenesis. Predicted to be part of cytosolic large ribosomal subunit.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: AABR07058519.1; LOC685704; similar to 60S ribosomal protein L26 (Silica-induced gene 20 protein) (SIG-20)
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Rpl26  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87114,144,295 - 114,144,800 (-)NCBIGRCr8
mRatBN7.27112,264,114 - 112,264,619 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7112,264,153 - 112,264,590 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7114,019,669 - 114,020,174 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07116,243,206 - 116,243,711 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07116,212,576 - 116,213,081 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,942,645 - 121,943,150 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,942,684 - 121,943,121 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.07121,934,428 - 121,934,910 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47119,005,761 - 119,006,198 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7108,588,310 - 108,588,815 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_028319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000046460   ⟹   ENSRNOP00000045458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7112,264,153 - 112,264,590 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000045458.1
Ensembl Acc Id: ENSRNOP00000045458   ⟸   ENSRNOT00000046460
Protein Domains
KOW

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AE42-F1-model_v2 AlphaFold D4AE42 1-145 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590264 AgrOrtholog
BioCyc Gene G2FUF-32694 BioCyc
Ensembl Genes ENSRNOG00000032777 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046460.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.30 UniProtKB/TrEMBL
InterPro KOW UniProtKB/TrEMBL
  KOW_RPL26/RPL24 UniProtKB/TrEMBL
  Rib_L2_dom2 UniProtKB/TrEMBL
  Ribosomal_L24/26_CS UniProtKB/TrEMBL
  Ribosomal_L26/L24P_euk/arc UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/TrEMBL
NCBI Gene 685704 ENTREZGENE
PANTHER PTHR11143 UniProtKB/TrEMBL
  RIBOSOMAL PROTEIN L26, PSEUDOGENE 1 UniProtKB/TrEMBL
Pfam KOW UniProtKB/TrEMBL
  Ribosomal_L26 UniProtKB/TrEMBL
PhenoGen Rpl26-ps1 PhenoGen
PROSITE RIBOSOMAL_L24 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032777 RatGTEx
SMART KOW UniProtKB/TrEMBL
Superfamily-SCOP SSF50104 UniProtKB/TrEMBL
UniProt D4AE42_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Rpl26-ps1  ribosomal protein L26, pseudogene 1  AABR07058519.1    Data merged from RGD:15003978 737654 PROVISIONAL
2019-11-08 AABR07058519.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2009-01-21 Rpl26-ps1  ribosomal protein L26, pseudogene 1  LOC685704  similar to 60S ribosomal protein L26 (Silica-induced gene 20 protein) (SIG-20)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC685704  similar to 60S ribosomal protein L26 (Silica-induced gene 20 protein) (SIG-20)      Symbol and Name status set to provisional 70820 PROVISIONAL